data_2P8C # _model_server_result.job_id H_xfxKPQIwgWDw9RlKNSmg _model_server_result.datetime_utc '2025-03-01 19:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2P8C # _exptl.entry_id 2P8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.274 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-(3-CARBOXYPROPANOYL)-L-ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P8C _cell.length_a 137.339 _cell.length_b 137.339 _cell.length_c 87.85 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 218 A GLU 218 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OD2 ASP 243 A ASP 243 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 B MG MG . A MG 401 1_555 C O SUG . A SUG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C10 H18 N4 O5' _chem_comp.formula_weight 274.274 _chem_comp.id SUG _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(3-CARBOXYPROPANOYL)-L-ARGININE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N~2~-SUCCINYLARGININE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C SUG sing 290 n n O2 HO2 SUG sing 291 n n N CA SUG sing 292 n n N CV SUG sing 293 n n N HN SUG sing 294 n n CA CB SUG sing 295 n n CA C SUG sing 296 n n CA HA SUG sing 297 n n CB CG SUG sing 298 n n CB HB1 SUG sing 299 n n CB HB2 SUG sing 300 n n CG CD SUG sing 301 n n CG HG1 SUG sing 302 n n CG HG2 SUG sing 303 n n CD NE SUG sing 304 n n CD HD1 SUG sing 305 n n CD HD2A SUG sing 306 n n NE CZ SUG sing 307 n n NE HNE SUG sing 308 n n CZ NH1 SUG doub 309 n n CZ NH2 SUG sing 310 n n NH1 HH1 SUG sing 311 n n NH2 HH21 SUG sing 312 n n NH2 HH22 SUG sing 313 n n C O SUG doub 314 n n CW CX SUG sing 315 n n CW CV SUG sing 316 n n CW HW1 SUG sing 317 n n CW HW2 SUG sing 318 n n CX CY SUG sing 319 n n CX HX1 SUG sing 320 n n CX HX2 SUG sing 321 n n CY OD1 SUG doub 322 n n CY OD2 SUG sing 323 n n OD2 HD2 SUG sing 324 n n CV OXT SUG doub 325 n n # _atom_sites.entry_id 2P8C _atom_sites.fract_transf_matrix[1][1] 0.007281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 501 MG MG . C 3 SUG A 1 501 401 SUG SUG . D 4 HOH A 1 502 1 HOH HOH . D 4 HOH A 2 503 2 HOH HOH . D 4 HOH A 3 504 5 HOH HOH . D 4 HOH A 4 505 6 HOH HOH . D 4 HOH A 5 506 7 HOH HOH . D 4 HOH A 6 507 8 HOH HOH . D 4 HOH A 7 508 9 HOH HOH . D 4 HOH A 8 509 11 HOH HOH . D 4 HOH A 9 510 12 HOH HOH . D 4 HOH A 10 511 13 HOH HOH . D 4 HOH A 11 512 14 HOH HOH . D 4 HOH A 12 513 15 HOH HOH . D 4 HOH A 13 514 16 HOH HOH . D 4 HOH A 14 515 18 HOH HOH . D 4 HOH A 15 516 20 HOH HOH . D 4 HOH A 16 517 21 HOH HOH . D 4 HOH A 17 518 22 HOH HOH . D 4 HOH A 18 519 23 HOH HOH . D 4 HOH A 19 520 24 HOH HOH . D 4 HOH A 20 521 25 HOH HOH . D 4 HOH A 21 522 26 HOH HOH . D 4 HOH A 22 523 27 HOH HOH . D 4 HOH A 23 524 28 HOH HOH . D 4 HOH A 24 525 29 HOH HOH . D 4 HOH A 25 526 30 HOH HOH . D 4 HOH A 26 527 31 HOH HOH . D 4 HOH A 27 528 32 HOH HOH . D 4 HOH A 28 529 33 HOH HOH . D 4 HOH A 29 530 34 HOH HOH . D 4 HOH A 30 531 35 HOH HOH . D 4 HOH A 31 532 36 HOH HOH . D 4 HOH A 32 533 37 HOH HOH . D 4 HOH A 33 534 38 HOH HOH . D 4 HOH A 34 535 39 HOH HOH . D 4 HOH A 35 536 41 HOH HOH . D 4 HOH A 36 537 42 HOH HOH . D 4 HOH A 37 538 43 HOH HOH . D 4 HOH A 38 539 44 HOH HOH . D 4 HOH A 39 540 45 HOH HOH . D 4 HOH A 40 541 46 HOH HOH . D 4 HOH A 41 542 47 HOH HOH . D 4 HOH A 42 543 48 HOH HOH . D 4 HOH A 43 544 49 HOH HOH . D 4 HOH A 44 545 50 HOH HOH . D 4 HOH A 45 546 51 HOH HOH . D 4 HOH A 46 547 52 HOH HOH . D 4 HOH A 47 548 53 HOH HOH . D 4 HOH A 48 549 54 HOH HOH . D 4 HOH A 49 550 55 HOH HOH . D 4 HOH A 50 551 56 HOH HOH . D 4 HOH A 51 552 57 HOH HOH . D 4 HOH A 52 553 58 HOH HOH . D 4 HOH A 53 554 60 HOH HOH . D 4 HOH A 54 555 61 HOH HOH . D 4 HOH A 55 556 62 HOH HOH . D 4 HOH A 56 557 63 HOH HOH . D 4 HOH A 57 558 64 HOH HOH . D 4 HOH A 58 559 65 HOH HOH . D 4 HOH A 59 560 66 HOH HOH . D 4 HOH A 60 561 67 HOH HOH . D 4 HOH A 61 562 68 HOH HOH . D 4 HOH A 62 563 69 HOH HOH . D 4 HOH A 63 564 70 HOH HOH . D 4 HOH A 64 565 71 HOH HOH . D 4 HOH A 65 566 72 HOH HOH . D 4 HOH A 66 567 73 HOH HOH . D 4 HOH A 67 568 74 HOH HOH . D 4 HOH A 68 569 75 HOH HOH . D 4 HOH A 69 570 76 HOH HOH . D 4 HOH A 70 571 77 HOH HOH . D 4 HOH A 71 572 78 HOH HOH . D 4 HOH A 72 573 79 HOH HOH . D 4 HOH A 73 574 80 HOH HOH . D 4 HOH A 74 575 81 HOH HOH . D 4 HOH A 75 576 82 HOH HOH . D 4 HOH A 76 577 83 HOH HOH . D 4 HOH A 77 578 84 HOH HOH . D 4 HOH A 78 579 85 HOH HOH . D 4 HOH A 79 580 86 HOH HOH . D 4 HOH A 80 581 87 HOH HOH . D 4 HOH A 81 582 89 HOH HOH . D 4 HOH A 82 583 90 HOH HOH . D 4 HOH A 83 584 92 HOH HOH . D 4 HOH A 84 585 93 HOH HOH . D 4 HOH A 85 586 95 HOH HOH . D 4 HOH A 86 587 96 HOH HOH . D 4 HOH A 87 588 97 HOH HOH . D 4 HOH A 88 589 98 HOH HOH . D 4 HOH A 89 590 99 HOH HOH . D 4 HOH A 90 591 100 HOH HOH . D 4 HOH A 91 592 101 HOH HOH . D 4 HOH A 92 593 102 HOH HOH . D 4 HOH A 93 594 103 HOH HOH . D 4 HOH A 94 595 104 HOH HOH . D 4 HOH A 95 596 105 HOH HOH . D 4 HOH A 96 597 106 HOH HOH . D 4 HOH A 97 598 107 HOH HOH . D 4 HOH A 98 599 108 HOH HOH . D 4 HOH A 99 600 109 HOH HOH . D 4 HOH A 100 601 110 HOH HOH . D 4 HOH A 101 602 111 HOH HOH . D 4 HOH A 102 603 112 HOH HOH . D 4 HOH A 103 604 113 HOH HOH . D 4 HOH A 104 605 115 HOH HOH . D 4 HOH A 105 606 116 HOH HOH . D 4 HOH A 106 607 117 HOH HOH . D 4 HOH A 107 608 118 HOH HOH . D 4 HOH A 108 609 119 HOH HOH . D 4 HOH A 109 610 121 HOH HOH . D 4 HOH A 110 611 123 HOH HOH . D 4 HOH A 111 612 124 HOH HOH . D 4 HOH A 112 613 125 HOH HOH . D 4 HOH A 113 614 128 HOH HOH . D 4 HOH A 114 615 129 HOH HOH . D 4 HOH A 115 616 131 HOH HOH . D 4 HOH A 116 617 132 HOH HOH . D 4 HOH A 117 618 133 HOH HOH . D 4 HOH A 118 619 134 HOH HOH . D 4 HOH A 119 620 135 HOH HOH . D 4 HOH A 120 621 136 HOH HOH . D 4 HOH A 121 622 137 HOH HOH . D 4 HOH A 122 623 138 HOH HOH . D 4 HOH A 123 624 139 HOH HOH . D 4 HOH A 124 625 140 HOH HOH . D 4 HOH A 125 626 141 HOH HOH . D 4 HOH A 126 627 143 HOH HOH . D 4 HOH A 127 628 144 HOH HOH . D 4 HOH A 128 629 146 HOH HOH . D 4 HOH A 129 630 147 HOH HOH . D 4 HOH A 130 631 148 HOH HOH . D 4 HOH A 131 632 150 HOH HOH . D 4 HOH A 132 633 154 HOH HOH . D 4 HOH A 133 634 155 HOH HOH . D 4 HOH A 134 635 157 HOH HOH . D 4 HOH A 135 636 158 HOH HOH . D 4 HOH A 136 637 159 HOH HOH . D 4 HOH A 137 638 161 HOH HOH . D 4 HOH A 138 639 162 HOH HOH . D 4 HOH A 139 640 163 HOH HOH . D 4 HOH A 140 641 164 HOH HOH . D 4 HOH A 141 642 165 HOH HOH . D 4 HOH A 142 643 166 HOH HOH . D 4 HOH A 143 644 167 HOH HOH . D 4 HOH A 144 645 169 HOH HOH . D 4 HOH A 145 646 171 HOH HOH . D 4 HOH A 146 647 172 HOH HOH . D 4 HOH A 147 648 173 HOH HOH . D 4 HOH A 148 649 174 HOH HOH . D 4 HOH A 149 650 175 HOH HOH . D 4 HOH A 150 651 176 HOH HOH . D 4 HOH A 151 652 178 HOH HOH . D 4 HOH A 152 653 179 HOH HOH . D 4 HOH A 153 654 181 HOH HOH . D 4 HOH A 154 655 182 HOH HOH . D 4 HOH A 155 656 183 HOH HOH . D 4 HOH A 156 657 186 HOH HOH . D 4 HOH A 157 658 187 HOH HOH . D 4 HOH A 158 659 190 HOH HOH . D 4 HOH A 159 660 191 HOH HOH . D 4 HOH A 160 661 192 HOH HOH . D 4 HOH A 161 662 193 HOH HOH . D 4 HOH A 162 663 194 HOH HOH . D 4 HOH A 163 664 196 HOH HOH . D 4 HOH A 164 665 198 HOH HOH . D 4 HOH A 165 666 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 SUG . . . C 3 -4.853 28.673 16.94 1 28.75 ? O2 SUG 501 A 1 HETATM 2 N N SUG . . . C 3 -7.581 31.019 17.558 1 30.83 ? N SUG 501 A 1 HETATM 3 C CA SUG . . . C 3 -6.453 30.51 16.707 1 31.36 ? CA SUG 501 A 1 HETATM 4 C CB SUG . . . C 3 -5.217 31.451 16.898 1 31.29 ? CB SUG 501 A 1 HETATM 5 C CG SUG . . . C 3 -5.563 32.908 16.538 1 33.83 ? CG SUG 501 A 1 HETATM 6 C CD SUG . . . C 3 -4.49 33.598 15.709 1 33.82 ? CD SUG 501 A 1 HETATM 7 N NE SUG . . . C 3 -4.907 34.962 15.407 1 37.99 ? NE SUG 501 A 1 HETATM 8 C CZ SUG . . . C 3 -4.159 35.906 14.835 1 39.53 ? CZ SUG 501 A 1 HETATM 9 N NH1 SUG . . . C 3 -2.899 35.656 14.479 1 38.01 ? NH1 SUG 501 A 1 HETATM 10 N NH2 SUG . . . C 3 -4.68 37.109 14.617 1 37.89 ? NH2 SUG 501 A 1 HETATM 11 C C SUG . . . C 3 -6.081 28.994 16.945 1 29.86 ? C SUG 501 A 1 HETATM 12 O O SUG . . . C 3 -7.092 28.238 17.111 1 29.47 ? O SUG 501 A 1 HETATM 13 C CW SUG . . . C 3 -9.013 31.453 19.52 1 32.94 ? CW SUG 501 A 1 HETATM 14 C CX SUG . . . C 3 -10.28 31.388 18.659 1 29.23 ? CX SUG 501 A 1 HETATM 15 C CY SUG . . . C 3 -11.488 32.098 19.324 1 30.16 ? CY SUG 501 A 1 HETATM 16 O OD1 SUG . . . C 3 -11.865 31.647 20.458 1 28.96 ? OD1 SUG 501 A 1 HETATM 17 O OD2 SUG . . . C 3 -11.971 33.066 18.652 1 25.27 ? OD2 SUG 501 A 1 HETATM 18 C CV SUG . . . C 3 -7.774 30.791 18.936 1 32.91 ? CV SUG 501 A 1 HETATM 19 O OXT SUG . . . C 3 -7.027 30.126 19.653 1 32.48 ? OXT SUG 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #