data_2P8W
#
_model_server_result.job_id            xAMGhAnpwThUBuq3G6-D9w 
_model_server_result.datetime_utc      '2024-12-03 19:54:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":843}' 
#
_entry.id    2P8W 
#
_exptl.entry_id    2P8W 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2P8W 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CA VAL 28 T VAL 28 1_555 C O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale2 A C VAL 28 T VAL 28 1_555 C O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A N ASP 29 T ASP 29 1_555 C PG GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale4 A N ASP 29 T ASP 29 1_555 C O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.132 ? 
covale ? covale5 A N GLY 31 T GLY 31 1_555 C O1B GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale6 A OD1 ASP 161 T ASP 161 1_555 C N2 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? 
covale ? covale7 A OD2 ASP 161 T ASP 161 1_555 C N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
covale ? covale8 A C SER 213 T SER 213 1_555 C O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? 
covale ? covale9 A OG SER 213 T SER 213 1_555 C O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale10 A OG SER 213 T SER 213 1_555 C C6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
covale ? covale11 A OG SER 213 T SER 213 1_555 C N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? 
covale ? covale12 A N LEU 215 T LEU 215 1_555 C N7 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
covale ? covale13 A CB LEU 215 T LEU 215 1_555 C C4 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
covale ? covale14 A CD1 LEU 215 T LEU 215 1_555 C O2' GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2P8W 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           GNP 
_pdbx_nonpoly_scheme.pdb_strand_id    T 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      843 
_pdbx_nonpoly_scheme.auth_seq_num     843 
_pdbx_nonpoly_scheme.pdb_mon_id       GNP 
_pdbx_nonpoly_scheme.auth_mon_id      GNP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -16.461 45.878 -61.9 1 11.41 ? PG GNP 843 T 1 
HETATM 2 O O1G GNP . . . C 3 -15.9 45.025 -60.826 1 14.08 ? O1G GNP 843 T 1 
HETATM 3 O O2G GNP . . . C 3 -17.324 45.246 -62.981 1 24.4 ? O2G GNP 843 T 1 
HETATM 4 O O3G GNP . . . C 3 -17.227 47.132 -61.48 1 10.93 ? O3G GNP 843 T 1 
HETATM 5 N N3B GNP . . . C 3 -15.387 46.823 -62.547 1 10.02 ? N3B GNP 843 T 1 
HETATM 6 P PB GNP . . . C 3 -15.106 47.886 -63.648 1 21.4 ? PB GNP 843 T 1 
HETATM 7 O O1B GNP . . . C 3 -15.863 47.799 -64.88 1 10.46 ? O1B GNP 843 T 1 
HETATM 8 O O2B GNP . . . C 3 -15.303 49.236 -62.927 1 26.12 ? O2B GNP 843 T 1 
HETATM 9 O O3A GNP . . . C 3 -13.615 48.041 -64.077 1 12.87 ? O3A GNP 843 T 1 
HETATM 10 P PA GNP . . . C 3 -12.504 49.012 -63.64 1 2 ? PA GNP 843 T 1 
HETATM 11 O O1A GNP . . . C 3 -12.152 48.789 -62.221 1 10.31 ? O1A GNP 843 T 1 
HETATM 12 O O2A GNP . . . C 3 -12.763 50.424 -63.865 1 11.51 ? O2A GNP 843 T 1 
HETATM 13 O O5' GNP . . . C 3 -11.288 48.776 -64.616 1 8.47 ? O5' GNP 843 T 1 
HETATM 14 C C5' GNP . . . C 3 -10.848 47.41 -64.675 1 17.04 ? C5' GNP 843 T 1 
HETATM 15 C C4' GNP . . . C 3 -9.405 47.242 -65.162 1 17.78 ? C4' GNP 843 T 1 
HETATM 16 O O4' GNP . . . C 3 -9.314 47.692 -66.479 1 21.91 ? O4' GNP 843 T 1 
HETATM 17 C C3' GNP . . . C 3 -8.49 48.178 -64.461 1 17.01 ? C3' GNP 843 T 1 
HETATM 18 O O3' GNP . . . C 3 -7.265 47.523 -64.22 1 24.76 ? O3' GNP 843 T 1 
HETATM 19 C C2' GNP . . . C 3 -8.314 49.36 -65.346 1 18.13 ? C2' GNP 843 T 1 
HETATM 20 O O2' GNP . . . C 3 -7.002 49.911 -65.183 1 21.15 ? O2' GNP 843 T 1 
HETATM 21 C C1' GNP . . . C 3 -8.445 48.793 -66.633 1 13.44 ? C1' GNP 843 T 1 
HETATM 22 N N9 GNP . . . C 3 -8.962 49.785 -67.552 1 3.7 ? N9 GNP 843 T 1 
HETATM 23 C C8 GNP . . . C 3 -9.979 50.67 -67.493 1 7.9 ? C8 GNP 843 T 1 
HETATM 24 N N7 GNP . . . C 3 -10.114 51.435 -68.543 1 2.12 ? N7 GNP 843 T 1 
HETATM 25 C C5 GNP . . . C 3 -9.06 50.993 -69.34 1 11.98 ? C5 GNP 843 T 1 
HETATM 26 C C6 GNP . . . C 3 -8.637 51.407 -70.618 1 15.74 ? C6 GNP 843 T 1 
HETATM 27 O O6 GNP . . . C 3 -9.068 52.347 -71.269 1 20.74 ? O6 GNP 843 T 1 
HETATM 28 N N1 GNP . . . C 3 -7.56 50.674 -71.103 1 15.25 ? N1 GNP 843 T 1 
HETATM 29 C C2 GNP . . . C 3 -6.951 49.657 -70.419 1 22.71 ? C2 GNP 843 T 1 
HETATM 30 N N2 GNP . . . C 3 -5.976 49.015 -71.057 1 22.46 ? N2 GNP 843 T 1 
HETATM 31 N N3 GNP . . . C 3 -7.33 49.271 -69.203 1 14.97 ? N3 GNP 843 T 1 
HETATM 32 C C4 GNP . . . C 3 -8.387 49.984 -68.739 1 9.41 ? C4 GNP 843 T 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           32 
#