data_2P8Y # _model_server_result.job_id L_pKYS1rbeYpWYw9Xpwh6g _model_server_result.datetime_utc '2025-01-02 16:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1700}' # _entry.id 2P8Y # _exptl.entry_id 2P8Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 494.618 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P8Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P8Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 0.891 ? covale ? covale2 A O ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 ? covale ? covale3 A C ILE 698 T ILE 698 1_555 A CA DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? covale ? covale4 A CA ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale5 A O DDE 699 T DDE 699 1_555 A N ARG 700 T ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale6 A NE2 DDE 699 T DDE 699 1_555 B C1D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? # _chem_comp.formula 'C27 H42 O8' _chem_comp.formula_weight 494.618 _chem_comp.id SO1 _chem_comp.mon_nstd_flag . _chem_comp.name '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SORDARIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C5 SO1 sing 440 n n O14 H14 SO1 sing 441 n n C5 O15 SO1 doub 442 n n C5 C1 SO1 sing 443 n n C1 C4 SO1 sing 444 n n C1 C3 SO1 sing 445 n n C1 C2 SO1 sing 446 n n C4 C12 SO1 sing 447 n n C4 C13 SO1 sing 448 n n C4 H4 SO1 sing 449 n n C12 C6 SO1 sing 450 n n C12 H121 SO1 sing 451 n n C12 H122 SO1 sing 452 n n C6 C10 SO1 sing 453 n n C6 C2 SO1 sing 454 n n C6 H6 SO1 sing 455 n n C10 C3 SO1 sing 456 n n C10 H101 SO1 sing 457 n n C10 H102 SO1 sing 458 n n C3 C11 SO1 sing 459 n n C3 C9 SO1 sing 460 n n C11 O19 SO1 doub 461 n n C11 H11 SO1 sing 462 n n C9 C18 SO1 sing 463 n n C9 C16 SO1 sing 464 n n C9 H9 SO1 sing 465 n n C18 C24 SO1 sing 466 n n C18 H181 SO1 sing 467 n n C18 H182 SO1 sing 468 n n C24 C22 SO1 sing 469 n n C24 H241 SO1 sing 470 n n C24 H242 SO1 sing 471 n n C22 C25 SO1 sing 472 n n C22 C16 SO1 sing 473 n n C22 H22 SO1 sing 474 n n C25 H251 SO1 sing 475 n n C25 H252 SO1 sing 476 n n C25 H253 SO1 sing 477 n n C16 C7 SO1 sing 478 n n C16 H16 SO1 sing 479 n n C7 C2 SO1 sing 480 n n C7 H71 SO1 sing 481 n n C7 H72 SO1 sing 482 n n C2 C8 SO1 sing 483 n n C8 O17 SO1 sing 484 n n C8 H81 SO1 sing 485 n n C8 H82 SO1 sing 486 n n O17 C52 SO1 sing 487 n n C52 O56 SO1 sing 488 n n C52 C53 SO1 sing 489 n n C52 H52 SO1 sing 490 n n O56 C56 SO1 sing 491 n n C56 C61 SO1 sing 492 n n C56 C55 SO1 sing 493 n n C56 H56 SO1 sing 494 n n C61 H611 SO1 sing 495 n n C61 H612 SO1 sing 496 n n C61 H613 SO1 sing 497 n n C55 O64 SO1 sing 498 n n C55 C54 SO1 sing 499 n n C55 H55 SO1 sing 500 n n O64 C65 SO1 sing 501 n n C65 H651 SO1 sing 502 n n C65 H652 SO1 sing 503 n n C65 H653 SO1 sing 504 n n C54 O60 SO1 sing 505 n n C54 C53 SO1 sing 506 n n C54 H54 SO1 sing 507 n n O60 H60 SO1 sing 508 n n C53 O57 SO1 sing 509 n n C53 H53 SO1 sing 510 n n O57 H57 SO1 sing 511 n n C13 C20 SO1 sing 512 n n C13 C21 SO1 sing 513 n n C13 H13 SO1 sing 514 n n C20 H201 SO1 sing 515 n n C20 H202 SO1 sing 516 n n C20 H203 SO1 sing 517 n n C21 H211 SO1 sing 518 n n C21 H212 SO1 sing 519 n n C21 H213 SO1 sing 520 n n # _atom_sites.entry_id 2P8Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR T 1 1699 1699 APR APR . C 3 SO1 T 1 1700 800 SO1 SO1 . D 4 GDP T 1 843 843 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 SO1 . . . C 3 -39.004 27.94 -41.347 1 34.67 ? O14 SO1 1700 T 1 HETATM 2 C C5 SO1 . . . C 3 -38.434 26.833 -41.325 1 35.39 ? C5 SO1 1700 T 1 HETATM 3 O O15 SO1 . . . C 3 -37.748 26.373 -40.383 1 37.77 ? O15 SO1 1700 T 1 HETATM 4 C C1 SO1 . . . C 3 -38.577 25.938 -42.636 1 35.62 ? C1 SO1 1700 T 1 HETATM 5 C C4 SO1 . . . C 3 -37.134 25.736 -43.351 1 35.39 ? C4 SO1 1700 T 1 HETATM 6 C C12 SO1 . . . C 3 -37.486 25.245 -44.639 1 35.22 ? C12 SO1 1700 T 1 HETATM 7 C C6 SO1 . . . C 3 -39.02 25.149 -44.595 1 35 ? C6 SO1 1700 T 1 HETATM 8 C C10 SO1 . . . C 3 -39.354 23.836 -43.787 1 34.45 ? C10 SO1 1700 T 1 HETATM 9 C C3 SO1 . . . C 3 -39.314 24.459 -42.326 1 35.33 ? C3 SO1 1700 T 1 HETATM 10 C C11 SO1 . . . C 3 -38.378 23.685 -41.35 1 36.79 ? C11 SO1 1700 T 1 HETATM 11 O O19 SO1 . . . C 3 -37.71 22.707 -41.631 1 35.94 ? O19 SO1 1700 T 1 HETATM 12 C C9 SO1 . . . C 3 -40.747 24.774 -41.698 1 34.52 ? C9 SO1 1700 T 1 HETATM 13 C C18 SO1 . . . C 3 -41.699 23.692 -41.231 1 33.79 ? C18 SO1 1700 T 1 HETATM 14 C C24 SO1 . . . C 3 -42.957 24.524 -40.912 1 34.81 ? C24 SO1 1700 T 1 HETATM 15 C C22 SO1 . . . C 3 -42.978 25.735 -41.898 1 33.86 ? C22 SO1 1700 T 1 HETATM 16 C C25 SO1 . . . C 3 -43.012 27.047 -41.091 1 33.54 ? C25 SO1 1700 T 1 HETATM 17 C C16 SO1 . . . C 3 -41.708 25.497 -42.736 1 34.84 ? C16 SO1 1700 T 1 HETATM 18 C C7 SO1 . . . C 3 -41.019 26.693 -43.445 1 34.62 ? C7 SO1 1700 T 1 HETATM 19 C C2 SO1 . . . C 3 -39.445 26.437 -43.82 1 35.14 ? C2 SO1 1700 T 1 HETATM 20 C C8 SO1 . . . C 3 -39.129 27.808 -44.522 1 35.39 ? C8 SO1 1700 T 1 HETATM 21 O O17 SO1 . . . C 3 -39.631 27.744 -45.843 1 37.41 ? O17 SO1 1700 T 1 HETATM 22 C C52 SO1 . . . C 3 -39.399 28.885 -46.598 1 37.83 ? C52 SO1 1700 T 1 HETATM 23 O O56 SO1 . . . C 3 -39.954 30.078 -45.918 1 38.46 ? O56 SO1 1700 T 1 HETATM 24 C C56 SO1 . . . C 3 -39.705 31.317 -46.628 1 37.98 ? C56 SO1 1700 T 1 HETATM 25 C C61 SO1 . . . C 3 -40.312 32.464 -45.807 1 38.99 ? C61 SO1 1700 T 1 HETATM 26 C C55 SO1 . . . C 3 -40.301 31.244 -48.09 1 38.29 ? C55 SO1 1700 T 1 HETATM 27 O O64 SO1 . . . C 3 -40.031 32.469 -48.819 1 39.78 ? O64 SO1 1700 T 1 HETATM 28 C C65 SO1 . . . C 3 -41.186 33.255 -49.131 1 43.06 ? C65 SO1 1700 T 1 HETATM 29 C C54 SO1 . . . C 3 -39.675 30.042 -48.847 1 38.22 ? C54 SO1 1700 T 1 HETATM 30 O O60 SO1 . . . C 3 -38.26 30.223 -48.936 1 40.96 ? O60 SO1 1700 T 1 HETATM 31 C C53 SO1 . . . C 3 -39.969 28.738 -48.073 1 38.51 ? C53 SO1 1700 T 1 HETATM 32 O O57 SO1 . . . C 3 -41.381 28.542 -48.027 1 36.47 ? O57 SO1 1700 T 1 HETATM 33 C C13 SO1 . . . C 3 -35.739 25.999 -42.764 1 34.83 ? C13 SO1 1700 T 1 HETATM 34 C C20 SO1 . . . C 3 -34.673 25.032 -43.337 1 36.5 ? C20 SO1 1700 T 1 HETATM 35 C C21 SO1 . . . C 3 -35.256 27.453 -43.001 1 32.83 ? C21 SO1 1700 T 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #