data_2P8Z
#
_model_server_result.job_id            U43-Vxd9NJ9xeyAu8EKnjw 
_model_server_result.datetime_utc      '2024-10-20 19:51:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1700}' 
#
_entry.id    2P8Z 
#
_exptl.entry_id    2P8Z 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              494.618 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2P8Z 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CA VAL 28 T VAL 28 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale2 A C VAL 28 T VAL 28 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A N ASP 29 T ASP 29 1_555 E PG GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale4 A N ASP 29 T ASP 29 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.132 ? 
covale ? covale5 A N GLY 31 T GLY 31 1_555 E O1B GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale6 A OD2 ASP 161 T ASP 161 1_555 E N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
covale ? covale7 A OD1 ASP 161 T ASP 161 1_555 E N2 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? 
covale ? covale8 A OG SER 213 T SER 213 1_555 E N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? 
covale ? covale9 A C SER 213 T SER 213 1_555 E O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? 
covale ? covale10 A OG SER 213 T SER 213 1_555 E C6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? 
covale ? covale11 A OG SER 213 T SER 213 1_555 E O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
covale ? covale12 A CB LEU 215 T LEU 215 1_555 E C4 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
covale ? covale13 A N LEU 215 T LEU 215 1_555 E N7 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? 
covale ? covale14 A CD1 LEU 215 T LEU 215 1_555 E O2' GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
covale ? covale15 A OD1 ASN 581 T ASN 581 1_555 A O DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
covale ? covale16 A OD2 ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? 
covale ? covale17 A CG ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
covale ? covale18 A CB ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.195 ? 
covale ? covale19 A O ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
covale ? covale20 A C ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.637 ? 
covale ? covale21 A CD1 ILE 698 T ILE 698 1_555 A CAU DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
covale ? covale22 A CD1 ILE 698 T ILE 698 1_555 A CBW DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale23 A NE2 DDE 699 T DDE 699 1_555 C C1D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale24 A C DDE 699 T DDE 699 1_555 A N ARG 700 T ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? 
#
_chem_comp.formula           'C27 H42 O8' 
_chem_comp.formula_weight    494.618 
_chem_comp.id                SO1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SORDARIN 
#
_atom_sites.entry_id                     2P8Z 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 APR T 1 1699 1699 APR APR . 
D 4 SO1 T 1 1700 800 SO1 SO1 . 
E 5 GNP T 1 843 843 GNP GNP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O14 SO1 . . . D 4 -38.916 29.772 -39.87 1 34.67 ? O14 SO1 1700 T 1 
HETATM 2 C C5 SO1 . . . D 4 -38.388 28.645 -39.933 1 35.39 ? C5 SO1 1700 T 1 
HETATM 3 O O15 SO1 . . . D 4 -37.834 28.035 -38.99 1 37.77 ? O15 SO1 1700 T 1 
HETATM 4 C C1 SO1 . . . D 4 -38.403 27.935 -41.36 1 35.62 ? C1 SO1 1700 T 1 
HETATM 5 C C4 SO1 . . . D 4 -36.892 27.76 -41.928 1 35.39 ? C4 SO1 1700 T 1 
HETATM 6 C C12 SO1 . . . D 4 -37.105 27.458 -43.301 1 35.22 ? C12 SO1 1700 T 1 
HETATM 7 C C6 SO1 . . . D 4 -38.635 27.429 -43.445 1 35 ? C6 SO1 1700 T 1 
HETATM 8 C C10 SO1 . . . D 4 -39.105 26.04 -42.863 1 34.45 ? C10 SO1 1700 T 1 
HETATM 9 C C3 SO1 . . . D 4 -39.218 26.466 -41.337 1 35.33 ? C3 SO1 1700 T 1 
HETATM 10 C C11 SO1 . . . D 4 -38.43 25.528 -40.375 1 36.79 ? C11 SO1 1700 T 1 
HETATM 11 O O19 SO1 . . . D 4 -37.764 24.564 -40.707 1 35.94 ? O19 SO1 1700 T 1 
HETATM 12 C C9 SO1 . . . D 4 -40.705 26.764 -40.839 1 34.52 ? C9 SO1 1700 T 1 
HETATM 13 C C18 SO1 . . . D 4 -41.739 25.676 -40.633 1 33.79 ? C18 SO1 1700 T 1 
HETATM 14 C C24 SO1 . . . D 4 -42.999 26.518 -40.349 1 34.81 ? C24 SO1 1700 T 1 
HETATM 15 C C22 SO1 . . . D 4 -42.864 27.846 -41.159 1 33.86 ? C22 SO1 1700 T 1 
HETATM 16 C C25 SO1 . . . D 4 -42.953 29.043 -40.192 1 33.54 ? C25 SO1 1700 T 1 
HETATM 17 C C16 SO1 . . . D 4 -41.512 27.66 -41.873 1 34.84 ? C16 SO1 1700 T 1 
HETATM 18 C C7 SO1 . . . D 4 -40.707 28.903 -42.331 1 34.62 ? C7 SO1 1700 T 1 
HETATM 19 C C2 SO1 . . . D 4 -39.108 28.624 -42.557 1 35.14 ? C2 SO1 1700 T 1 
HETATM 20 C C8 SO1 . . . D 4 -38.668 30.059 -43.028 1 35.39 ? C8 SO1 1700 T 1 
HETATM 21 O O17 SO1 . . . D 4 -39.012 30.19 -44.394 1 37.41 ? O17 SO1 1700 T 1 
HETATM 22 C C52 SO1 . . . D 4 -38.655 31.407 -44.958 1 37.83 ? C52 SO1 1700 T 1 
HETATM 23 O O56 SO1 . . . D 4 -39.25 32.527 -44.19 1 38.46 ? O56 SO1 1700 T 1 
HETATM 24 C C56 SO1 . . . D 4 -38.878 33.834 -44.695 1 37.98 ? C56 SO1 1700 T 1 
HETATM 25 C C61 SO1 . . . D 4 -39.542 34.892 -43.801 1 38.99 ? C61 SO1 1700 T 1 
HETATM 26 C C55 SO1 . . . D 4 -39.299 33.98 -46.211 1 38.29 ? C55 SO1 1700 T 1 
HETATM 27 O O64 SO1 . . . D 4 -38.906 35.275 -46.734 1 39.78 ? O64 SO1 1700 T 1 
HETATM 28 C C65 SO1 . . . D 4 -39.991 36.148 -47.066 1 43.06 ? C65 SO1 1700 T 1 
HETATM 29 C C54 SO1 . . . D 4 -38.626 32.858 -47.047 1 38.22 ? C54 SO1 1700 T 1 
HETATM 30 O O60 SO1 . . . D 4 -37.206 32.982 -46.95 1 40.96 ? O60 SO1 1700 T 1 
HETATM 31 C C53 SO1 . . . D 4 -39.052 31.48 -46.494 1 38.51 ? C53 SO1 1700 T 1 
HETATM 32 O O57 SO1 . . . D 4 -40.464 31.347 -46.635 1 36.47 ? O57 SO1 1700 T 1 
HETATM 33 C C13 SO1 . . . D 4 -35.57 27.879 -41.157 1 34.83 ? C13 SO1 1700 T 1 
HETATM 34 C C20 SO1 . . . D 4 -34.474 26.945 -41.73 1 36.5 ? C20 SO1 1700 T 1 
HETATM 35 C C21 SO1 . . . D 4 -35.016 29.326 -41.14 1 32.83 ? C21 SO1 1700 T 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#