data_2P8Z # _model_server_result.job_id q3tQgsAND5pBUKGiPbC0xw _model_server_result.datetime_utc '2024-12-13 16:29:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1700}' # _entry.id 2P8Z # _exptl.entry_id 2P8Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 494.618 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P8Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CA VAL 28 T VAL 28 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale2 A C VAL 28 T VAL 28 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A N ASP 29 T ASP 29 1_555 E PG GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? covale ? covale4 A N ASP 29 T ASP 29 1_555 E O2G GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.132 ? covale ? covale5 A N GLY 31 T GLY 31 1_555 E O1B GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale6 A OD2 ASP 161 T ASP 161 1_555 E N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? covale ? covale7 A OD1 ASP 161 T ASP 161 1_555 E N2 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.67 ? covale ? covale8 A OG SER 213 T SER 213 1_555 E N1 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale9 A C SER 213 T SER 213 1_555 E O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? covale ? covale10 A OG SER 213 T SER 213 1_555 E C6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale11 A OG SER 213 T SER 213 1_555 E O6 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale12 A CB LEU 215 T LEU 215 1_555 E C4 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? covale ? covale13 A N LEU 215 T LEU 215 1_555 E N7 GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? covale ? covale14 A CD1 LEU 215 T LEU 215 1_555 E O2' GNP . T GNP 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? covale ? covale15 A OD1 ASN 581 T ASN 581 1_555 A O DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? covale ? covale16 A OD2 ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 ? covale ? covale17 A CG ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale18 A CB ASP 696 T ASP 696 1_555 C O3D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.195 ? covale ? covale19 A O ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? covale ? covale20 A C ILE 698 T ILE 698 1_555 A N DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.637 ? covale ? covale21 A CD1 ILE 698 T ILE 698 1_555 A CAU DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? covale ? covale22 A CD1 ILE 698 T ILE 698 1_555 A CBW DDE 699 T DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale23 A NE2 DDE 699 T DDE 699 1_555 C C1D APR . T APR 1699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale24 A C DDE 699 T DDE 699 1_555 A N ARG 700 T ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? # _chem_comp.formula 'C27 H42 O8' _chem_comp.formula_weight 494.618 _chem_comp.id SO1 _chem_comp.mon_nstd_flag . _chem_comp.name '[1R-(1.ALPHA.,3A.BETA.,4.BETA.,4A.BETA.,7.BETA.,7A.ALPHA.,8A.BETA.)]8A-[(6-DEOXY-4-O-METHYL-BETA-D-ALTROPYRANOSYLOXY)METHYL]-4-FORMYL-4,4A,5,6,7,7A,8,8A-OCTAHYDRO-7-METHYL-3-(1-METHYLETHYL)-1,4-METHANO-S-INDACENE-3A(1H)-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SORDARIN # _atom_sites.entry_id 2P8Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 APR T 1 1699 1699 APR APR . D 4 SO1 T 1 1700 800 SO1 SO1 . E 5 GNP T 1 843 843 GNP GNP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O14 SO1 . . . D 4 -38.916 29.772 -39.87 1 34.67 ? O14 SO1 1700 T 1 HETATM 2 C C5 SO1 . . . D 4 -38.388 28.645 -39.933 1 35.39 ? C5 SO1 1700 T 1 HETATM 3 O O15 SO1 . . . D 4 -37.834 28.035 -38.99 1 37.77 ? O15 SO1 1700 T 1 HETATM 4 C C1 SO1 . . . D 4 -38.403 27.935 -41.36 1 35.62 ? C1 SO1 1700 T 1 HETATM 5 C C4 SO1 . . . D 4 -36.892 27.76 -41.928 1 35.39 ? C4 SO1 1700 T 1 HETATM 6 C C12 SO1 . . . D 4 -37.105 27.458 -43.301 1 35.22 ? C12 SO1 1700 T 1 HETATM 7 C C6 SO1 . . . D 4 -38.635 27.429 -43.445 1 35 ? C6 SO1 1700 T 1 HETATM 8 C C10 SO1 . . . D 4 -39.105 26.04 -42.863 1 34.45 ? C10 SO1 1700 T 1 HETATM 9 C C3 SO1 . . . D 4 -39.218 26.466 -41.337 1 35.33 ? C3 SO1 1700 T 1 HETATM 10 C C11 SO1 . . . D 4 -38.43 25.528 -40.375 1 36.79 ? C11 SO1 1700 T 1 HETATM 11 O O19 SO1 . . . D 4 -37.764 24.564 -40.707 1 35.94 ? O19 SO1 1700 T 1 HETATM 12 C C9 SO1 . . . D 4 -40.705 26.764 -40.839 1 34.52 ? C9 SO1 1700 T 1 HETATM 13 C C18 SO1 . . . D 4 -41.739 25.676 -40.633 1 33.79 ? C18 SO1 1700 T 1 HETATM 14 C C24 SO1 . . . D 4 -42.999 26.518 -40.349 1 34.81 ? C24 SO1 1700 T 1 HETATM 15 C C22 SO1 . . . D 4 -42.864 27.846 -41.159 1 33.86 ? C22 SO1 1700 T 1 HETATM 16 C C25 SO1 . . . D 4 -42.953 29.043 -40.192 1 33.54 ? C25 SO1 1700 T 1 HETATM 17 C C16 SO1 . . . D 4 -41.512 27.66 -41.873 1 34.84 ? C16 SO1 1700 T 1 HETATM 18 C C7 SO1 . . . D 4 -40.707 28.903 -42.331 1 34.62 ? C7 SO1 1700 T 1 HETATM 19 C C2 SO1 . . . D 4 -39.108 28.624 -42.557 1 35.14 ? C2 SO1 1700 T 1 HETATM 20 C C8 SO1 . . . D 4 -38.668 30.059 -43.028 1 35.39 ? C8 SO1 1700 T 1 HETATM 21 O O17 SO1 . . . D 4 -39.012 30.19 -44.394 1 37.41 ? O17 SO1 1700 T 1 HETATM 22 C C52 SO1 . . . D 4 -38.655 31.407 -44.958 1 37.83 ? C52 SO1 1700 T 1 HETATM 23 O O56 SO1 . . . D 4 -39.25 32.527 -44.19 1 38.46 ? O56 SO1 1700 T 1 HETATM 24 C C56 SO1 . . . D 4 -38.878 33.834 -44.695 1 37.98 ? C56 SO1 1700 T 1 HETATM 25 C C61 SO1 . . . D 4 -39.542 34.892 -43.801 1 38.99 ? C61 SO1 1700 T 1 HETATM 26 C C55 SO1 . . . D 4 -39.299 33.98 -46.211 1 38.29 ? C55 SO1 1700 T 1 HETATM 27 O O64 SO1 . . . D 4 -38.906 35.275 -46.734 1 39.78 ? O64 SO1 1700 T 1 HETATM 28 C C65 SO1 . . . D 4 -39.991 36.148 -47.066 1 43.06 ? C65 SO1 1700 T 1 HETATM 29 C C54 SO1 . . . D 4 -38.626 32.858 -47.047 1 38.22 ? C54 SO1 1700 T 1 HETATM 30 O O60 SO1 . . . D 4 -37.206 32.982 -46.95 1 40.96 ? O60 SO1 1700 T 1 HETATM 31 C C53 SO1 . . . D 4 -39.052 31.48 -46.494 1 38.51 ? C53 SO1 1700 T 1 HETATM 32 O O57 SO1 . . . D 4 -40.464 31.347 -46.635 1 36.47 ? O57 SO1 1700 T 1 HETATM 33 C C13 SO1 . . . D 4 -35.57 27.879 -41.157 1 34.83 ? C13 SO1 1700 T 1 HETATM 34 C C20 SO1 . . . D 4 -34.474 26.945 -41.73 1 36.5 ? C20 SO1 1700 T 1 HETATM 35 C C21 SO1 . . . D 4 -35.016 29.326 -41.14 1 32.83 ? C21 SO1 1700 T 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #