data_2P95 # _model_server_result.job_id OZbduU9wtxwZFVycSnJCRQ _model_server_result.datetime_utc '2024-12-22 06:10:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p95 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 2P95 # _exptl.entry_id 2P95 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.931 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-CHLORO-N-((1R,2S)-2-(4-(2-OXOPYRIDIN-1(2H)-YL)BENZAMIDO) CYCLOPENTYL)THIOPHENE-2-CARBOXAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P95 _cell.length_a 57.6 _cell.length_b 72.3 _cell.length_c 78.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P95 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 46 L CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? disulf ? disulf4 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? disulf ? disulf5 B SG CYS 3 L CYS 89 1_555 B SG CYS 14 L CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? disulf ? disulf6 B SG CYS 10 L CYS 96 1_555 B SG CYS 23 L CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? disulf ? disulf7 B SG CYS 25 L CYS 111 1_555 B SG CYS 38 L CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? # _chem_comp.formula 'C22 H20 Cl N3 O3 S' _chem_comp.formula_weight 441.931 _chem_comp.id ME5 _chem_comp.mon_nstd_flag . _chem_comp.name '5-CHLORO-N-((1R,2S)-2-(4-(2-OXOPYRIDIN-1(2H)-YL)BENZAMIDO) CYCLOPENTYL)THIOPHENE-2-CARBOXAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O3 ME5 doub 218 n n C1 N1 ME5 sing 219 n n C1 C3 ME5 sing 220 n n C2 C3 ME5 doub 221 n n C2 C4 ME5 sing 222 n n C2 H2 ME5 sing 223 n n C3 S1 ME5 sing 224 n n C7 C44 ME5 doub 225 n n C7 C22 ME5 sing 226 n n C7 C17 ME5 sing 227 n n C8 C19 ME5 sing 228 n n C8 C10 ME5 sing 229 n n C8 H81 ME5 sing 230 n n C8 H82 ME5 sing 231 n n C10 C12 ME5 sing 232 n n C10 H101 ME5 sing 233 n n C10 H102 ME5 sing 234 n n C12 C13 ME5 sing 235 n n C12 H121 ME5 sing 236 n n C12 H122 ME5 sing 237 n n C13 N4 ME5 sing 238 n n C13 C19 ME5 sing 239 n n C13 H13 ME5 sing 240 n n C14 C16 ME5 doub 241 n n C14 C44 ME5 sing 242 n n C14 H14 ME5 sing 243 n n C15 C23 ME5 doub 244 n n C15 N2 ME5 sing 245 n n C15 H15 ME5 sing 246 n n C16 N2 ME5 sing 247 n n C16 C18 ME5 sing 248 n n C19 N1 ME5 sing 249 n n C19 H19 ME5 sing 250 n n C21 C24 ME5 sing 251 n n C21 O1 ME5 doub 252 n n C21 N2 ME5 sing 253 n n C22 C18 ME5 doub 254 n n C22 H22 ME5 sing 255 n n C24 C26 ME5 doub 256 n n C24 H24 ME5 sing 257 n n C17 O2 ME5 doub 258 n n C17 N4 ME5 sing 259 n n C44 H44 ME5 sing 260 n n C18 H18 ME5 sing 261 n n C23 C26 ME5 sing 262 n n C23 H23 ME5 sing 263 n n C26 H26 ME5 sing 264 n n N4 HN4 ME5 sing 265 n n N1 HN1 ME5 sing 266 n n C4 C5 ME5 doub 267 n n C4 H4 ME5 sing 268 n n S1 C5 ME5 sing 269 n n C5 CL1 ME5 sing 270 n n # _atom_sites.entry_id 2P95 _atom_sites.fract_transf_matrix[1][1] 0.017361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ME5 A 1 1 1 ME5 INH . D 4 HOH A 1 245 1 HOH HOH . D 4 HOH A 2 246 2 HOH HOH . D 4 HOH A 3 247 3 HOH HOH . D 4 HOH A 4 248 5 HOH HOH . D 4 HOH A 5 249 6 HOH HOH . D 4 HOH A 6 250 8 HOH HOH . D 4 HOH A 7 251 9 HOH HOH . D 4 HOH A 8 252 11 HOH HOH . D 4 HOH A 9 253 12 HOH HOH . D 4 HOH A 10 254 13 HOH HOH . D 4 HOH A 11 255 14 HOH HOH . D 4 HOH A 12 256 15 HOH HOH . D 4 HOH A 13 257 16 HOH HOH . D 4 HOH A 14 258 17 HOH HOH . D 4 HOH A 15 259 18 HOH HOH . D 4 HOH A 16 260 21 HOH HOH . D 4 HOH A 17 261 22 HOH HOH . D 4 HOH A 18 262 23 HOH HOH . D 4 HOH A 19 263 24 HOH HOH . D 4 HOH A 20 264 25 HOH HOH . D 4 HOH A 21 265 26 HOH HOH . D 4 HOH A 22 266 27 HOH HOH . D 4 HOH A 23 267 28 HOH HOH . D 4 HOH A 24 268 29 HOH HOH . D 4 HOH A 25 269 30 HOH HOH . D 4 HOH A 26 270 34 HOH HOH . D 4 HOH A 27 271 36 HOH HOH . D 4 HOH A 28 272 38 HOH HOH . D 4 HOH A 29 273 40 HOH HOH . D 4 HOH A 30 274 41 HOH HOH . D 4 HOH A 31 275 42 HOH HOH . D 4 HOH A 32 276 43 HOH HOH . D 4 HOH A 33 277 44 HOH HOH . D 4 HOH A 34 278 45 HOH HOH . D 4 HOH A 35 279 51 HOH HOH . D 4 HOH A 36 280 53 HOH HOH . D 4 HOH A 37 281 54 HOH HOH . D 4 HOH A 38 282 55 HOH HOH . D 4 HOH A 39 283 56 HOH HOH . D 4 HOH A 40 284 57 HOH HOH . D 4 HOH A 41 285 58 HOH HOH . D 4 HOH A 42 286 59 HOH HOH . D 4 HOH A 43 287 60 HOH HOH . D 4 HOH A 44 288 61 HOH HOH . D 4 HOH A 45 289 62 HOH HOH . D 4 HOH A 46 290 63 HOH HOH . D 4 HOH A 47 291 64 HOH HOH . D 4 HOH A 48 292 65 HOH HOH . D 4 HOH A 49 293 66 HOH HOH . D 4 HOH A 50 294 67 HOH HOH . D 4 HOH A 51 295 68 HOH HOH . D 4 HOH A 52 296 69 HOH HOH . D 4 HOH A 53 297 70 HOH HOH . D 4 HOH A 54 298 71 HOH HOH . D 4 HOH A 55 299 72 HOH HOH . D 4 HOH A 56 300 73 HOH HOH . D 4 HOH A 57 301 74 HOH HOH . D 4 HOH A 58 302 75 HOH HOH . D 4 HOH A 59 303 76 HOH HOH . D 4 HOH A 60 304 77 HOH HOH . D 4 HOH A 61 305 78 HOH HOH . D 4 HOH A 62 306 79 HOH HOH . D 4 HOH A 63 307 80 HOH HOH . D 4 HOH A 64 308 81 HOH HOH . D 4 HOH A 65 309 83 HOH HOH . D 4 HOH A 66 310 85 HOH HOH . D 4 HOH A 67 311 86 HOH HOH . D 4 HOH A 68 312 88 HOH HOH . E 4 HOH L 1 139 4 HOH HOH . E 4 HOH L 2 140 7 HOH HOH . E 4 HOH L 3 141 10 HOH HOH . E 4 HOH L 4 142 19 HOH HOH . E 4 HOH L 5 143 20 HOH HOH . E 4 HOH L 6 144 31 HOH HOH . E 4 HOH L 7 145 32 HOH HOH . E 4 HOH L 8 146 33 HOH HOH . E 4 HOH L 9 147 35 HOH HOH . E 4 HOH L 10 148 37 HOH HOH . E 4 HOH L 11 149 39 HOH HOH . E 4 HOH L 12 150 46 HOH HOH . E 4 HOH L 13 151 47 HOH HOH . E 4 HOH L 14 152 48 HOH HOH . E 4 HOH L 15 153 49 HOH HOH . E 4 HOH L 16 154 50 HOH HOH . E 4 HOH L 17 155 52 HOH HOH . E 4 HOH L 18 156 82 HOH HOH . E 4 HOH L 19 157 84 HOH HOH . E 4 HOH L 20 158 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ME5 . . . C 3 8.546 44.945 63.38 1 36 ? C1 ME5 1 A 1 HETATM 2 C C2 ME5 . . . C 3 9.296 43.886 65.5 1 33.05 ? C2 ME5 1 A 1 HETATM 3 C C3 ME5 . . . C 3 9.564 44.538 64.259 1 35.55 ? C3 ME5 1 A 1 HETATM 4 C C7 ME5 . . . C 3 7.149 42.147 59.358 1 37.7 ? C7 ME5 1 A 1 HETATM 5 C C8 ME5 . . . C 3 5.043 45.616 63.487 1 41.31 ? C8 ME5 1 A 1 HETATM 6 C C10 ME5 . . . C 3 4.384 44.505 64.269 1 41.58 ? C10 ME5 1 A 1 HETATM 7 C C12 ME5 . . . C 3 4.938 43.419 63.377 1 41.1 ? C12 ME5 1 A 1 HETATM 8 C C13 ME5 . . . C 3 5.391 43.979 62.047 1 40.11 ? C13 ME5 1 A 1 HETATM 9 C C14 ME5 . . . C 3 8.21 41.169 57.333 1 35.79 ? C14 ME5 1 A 1 HETATM 10 C C15 ME5 . . . C 3 9.856 38.188 57.539 1 35.51 ? C15 ME5 1 A 1 HETATM 11 C C16 ME5 . . . C 3 8.065 39.826 57.909 1 36.21 ? C16 ME5 1 A 1 HETATM 12 C C19 ME5 . . . C 3 6.232 45.116 62.669 1 40.22 ? C19 ME5 1 A 1 HETATM 13 C C21 ME5 . . . C 3 7.952 38.356 55.976 1 38.42 ? C21 ME5 1 A 1 HETATM 14 C C22 ME5 . . . C 3 6.927 40.807 59.931 1 37.66 ? C22 ME5 1 A 1 HETATM 15 C C24 ME5 . . . C 3 8.561 37.323 55.074 1 37.74 ? C24 ME5 1 A 1 HETATM 16 C C17 ME5 . . . C 3 6.516 43.281 60.036 1 38.59 ? C17 ME5 1 A 1 HETATM 17 C C44 ME5 . . . C 3 7.767 42.334 58.069 1 35.88 ? C44 ME5 1 A 1 HETATM 18 N N2 ME5 . . . C 3 8.644 38.753 57.183 1 37.15 ? N2 ME5 1 A 1 HETATM 19 C C18 ME5 . . . C 3 7.376 39.642 59.194 1 37 ? C18 ME5 1 A 1 HETATM 20 C C23 ME5 . . . C 3 10.45 37.196 56.683 1 36.77 ? C23 ME5 1 A 1 HETATM 21 C C26 ME5 . . . C 3 9.823 36.776 55.48 1 37.26 ? C26 ME5 1 A 1 HETATM 22 O O1 ME5 . . . C 3 6.873 38.887 55.713 1 38.38 ? O1 ME5 1 A 1 HETATM 23 N N4 ME5 . . . C 3 6.104 42.99 61.285 1 38.23 ? N4 ME5 1 A 1 HETATM 24 O O2 ME5 . . . C 3 6.344 44.383 59.535 1 38.95 ? O2 ME5 1 A 1 HETATM 25 N N1 ME5 . . . C 3 7.246 44.547 63.636 1 39.24 ? N1 ME5 1 A 1 HETATM 26 O O3 ME5 . . . C 3 8.865 45.654 62.418 1 36.47 ? O3 ME5 1 A 1 HETATM 27 C C4 ME5 . . . C 3 10.537 43.602 66.15 1 33.96 ? C4 ME5 1 A 1 HETATM 28 S S1 ME5 . . . C 3 11.217 44.782 63.913 1 33.4 ? S1 ME5 1 A 1 HETATM 29 C C5 ME5 . . . C 3 11.683 44.044 65.368 1 33.86 ? C5 ME5 1 A 1 HETATM 30 CL CL1 ME5 . . . C 3 13.413 43.857 65.783 1 34.2 ? CL1 ME5 1 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #