data_2P9C # _model_server_result.job_id uDgGHpJwkeng-dRzaBuXQA _model_server_result.datetime_utc '2025-03-06 10:34:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":450}' # _entry.id 2P9C # _exptl.entry_id 2P9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P9C _cell.length_a 142.142 _cell.length_b 130.785 _cell.length_c 50.188 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2P9C _atom_sites.fract_transf_matrix[1][1] 0.007035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 450 450 NAI NAI . D 3 SER A 1 451 451 SER SER . E 3 SER A 1 551 551 SER SER . F 2 NAI B 1 550 550 NAI NAI . G 4 HOH A 1 552 1 HOH HOH . G 4 HOH A 2 553 3 HOH HOH . G 4 HOH A 3 554 4 HOH HOH . G 4 HOH A 4 555 5 HOH HOH . G 4 HOH A 5 556 7 HOH HOH . G 4 HOH A 6 557 8 HOH HOH . G 4 HOH A 7 558 9 HOH HOH . G 4 HOH A 8 559 11 HOH HOH . G 4 HOH A 9 560 15 HOH HOH . G 4 HOH A 10 561 17 HOH HOH . G 4 HOH A 11 562 19 HOH HOH . G 4 HOH A 12 563 20 HOH HOH . G 4 HOH A 13 564 21 HOH HOH . G 4 HOH A 14 565 26 HOH HOH . G 4 HOH A 15 566 27 HOH HOH . G 4 HOH A 16 567 28 HOH HOH . G 4 HOH A 17 568 32 HOH HOH . G 4 HOH A 18 569 33 HOH HOH . G 4 HOH A 19 570 34 HOH HOH . G 4 HOH A 20 571 35 HOH HOH . G 4 HOH A 21 572 38 HOH HOH . G 4 HOH A 22 573 39 HOH HOH . G 4 HOH A 23 574 40 HOH HOH . G 4 HOH A 24 575 41 HOH HOH . G 4 HOH A 25 576 42 HOH HOH . G 4 HOH A 26 577 43 HOH HOH . G 4 HOH A 27 578 45 HOH HOH . G 4 HOH A 28 579 46 HOH HOH . G 4 HOH A 29 580 47 HOH HOH . G 4 HOH A 30 581 48 HOH HOH . G 4 HOH A 31 582 51 HOH HOH . G 4 HOH A 32 583 53 HOH HOH . G 4 HOH A 33 584 54 HOH HOH . H 4 HOH B 1 551 2 HOH HOH . H 4 HOH B 2 552 6 HOH HOH . H 4 HOH B 3 553 10 HOH HOH . H 4 HOH B 4 554 12 HOH HOH . H 4 HOH B 5 555 14 HOH HOH . H 4 HOH B 6 556 16 HOH HOH . H 4 HOH B 7 557 18 HOH HOH . H 4 HOH B 8 558 22 HOH HOH . H 4 HOH B 9 559 23 HOH HOH . H 4 HOH B 10 560 24 HOH HOH . H 4 HOH B 11 561 25 HOH HOH . H 4 HOH B 12 562 29 HOH HOH . H 4 HOH B 13 563 30 HOH HOH . H 4 HOH B 14 564 31 HOH HOH . H 4 HOH B 15 565 36 HOH HOH . H 4 HOH B 16 566 37 HOH HOH . H 4 HOH B 17 567 44 HOH HOH . H 4 HOH B 18 568 49 HOH HOH . H 4 HOH B 19 569 50 HOH HOH . H 4 HOH B 20 570 52 HOH HOH . H 4 HOH B 21 571 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 -19.384 -15.232 24.939 1 33.2 ? PA NAI 450 A 1 HETATM 2 O O1A NAI . . . C 2 -19.897 -16.556 25.345 1 35.18 ? O1A NAI 450 A 1 HETATM 3 O O2A NAI . . . C 2 -18.268 -15.3 23.982 1 38.3 ? O2A NAI 450 A 1 HETATM 4 O O5B NAI . . . C 2 -18.979 -14.444 26.247 1 41.04 ? O5B NAI 450 A 1 HETATM 5 C C5B NAI . . . C 2 -19.761 -14.583 27.411 1 33.25 ? C5B NAI 450 A 1 HETATM 6 C C4B NAI . . . C 2 -18.824 -14.202 28.539 1 35.4 ? C4B NAI 450 A 1 HETATM 7 O O4B NAI . . . C 2 -19.495 -13.76 29.705 1 35.61 ? O4B NAI 450 A 1 HETATM 8 C C3B NAI . . . C 2 -17.977 -15.404 28.907 1 46.9 ? C3B NAI 450 A 1 HETATM 9 O O3B NAI . . . C 2 -16.646 -14.957 28.986 1 48.06 ? O3B NAI 450 A 1 HETATM 10 C C2B NAI . . . C 2 -18.468 -15.773 30.289 1 44.94 ? C2B NAI 450 A 1 HETATM 11 O O2B NAI . . . C 2 -17.426 -16.32 31.06 1 49.56 ? O2B NAI 450 A 1 HETATM 12 C C1B NAI . . . C 2 -18.908 -14.412 30.816 1 42.43 ? C1B NAI 450 A 1 HETATM 13 N N9A NAI . . . C 2 -19.931 -14.586 31.836 1 41.73 ? N9A NAI 450 A 1 HETATM 14 C C8A NAI . . . C 2 -20.876 -15.577 31.873 1 43.69 ? C8A NAI 450 A 1 HETATM 15 N N7A NAI . . . C 2 -21.649 -15.374 32.962 1 41.42 ? N7A NAI 450 A 1 HETATM 16 C C5A NAI . . . C 2 -21.209 -14.282 33.616 1 40.62 ? C5A NAI 450 A 1 HETATM 17 C C6A NAI . . . C 2 -21.637 -13.647 34.784 1 45.79 ? C6A NAI 450 A 1 HETATM 18 N N6A NAI . . . C 2 -22.56 -14.22 35.574 1 35.4 ? N6A NAI 450 A 1 HETATM 19 N N1A NAI . . . C 2 -20.953 -12.504 35.202 1 42.31 ? N1A NAI 450 A 1 HETATM 20 C C2A NAI . . . C 2 -19.873 -12.012 34.48 1 40.45 ? C2A NAI 450 A 1 HETATM 21 N N3A NAI . . . C 2 -19.466 -12.668 33.332 1 45.22 ? N3A NAI 450 A 1 HETATM 22 C C4A NAI . . . C 2 -20.122 -13.775 32.912 1 39.94 ? C4A NAI 450 A 1 HETATM 23 O O3 NAI . . . C 2 -20.573 -14.343 24.368 1 39.96 ? O3 NAI 450 A 1 HETATM 24 P PN NAI . . . C 2 -20.389 -13.133 23.323 1 40.31 ? PN NAI 450 A 1 HETATM 25 O O1N NAI . . . C 2 -20.376 -13.66 21.933 1 52.25 ? O1N NAI 450 A 1 HETATM 26 O O2N NAI . . . C 2 -19.289 -12.276 23.836 1 44.93 ? O2N NAI 450 A 1 HETATM 27 O O5D NAI . . . C 2 -21.81 -12.372 23.482 1 40.28 ? O5D NAI 450 A 1 HETATM 28 C C5D NAI . . . C 2 -22.206 -11.85 24.724 1 37.01 ? C5D NAI 450 A 1 HETATM 29 C C4D NAI . . . C 2 -23.711 -11.637 24.77 1 30.76 ? C4D NAI 450 A 1 HETATM 30 O O4D NAI . . . C 2 -24.029 -10.838 23.67 1 31.37 ? O4D NAI 450 A 1 HETATM 31 C C3D NAI . . . C 2 -24.529 -12.899 24.605 1 37.49 ? C3D NAI 450 A 1 HETATM 32 O O3D NAI . . . C 2 -25.574 -12.841 25.542 1 35.95 ? O3D NAI 450 A 1 HETATM 33 C C2D NAI . . . C 2 -25.115 -12.778 23.21 1 38.85 ? C2D NAI 450 A 1 HETATM 34 O O2D NAI . . . C 2 -26.364 -13.426 23.094 1 46.78 ? O2D NAI 450 A 1 HETATM 35 C C1D NAI . . . C 2 -25.241 -11.269 23.109 1 40.67 ? C1D NAI 450 A 1 HETATM 36 N N1N NAI . . . C 2 -25.334 -10.753 21.734 1 44.19 ? N1N NAI 450 A 1 HETATM 37 C C2N NAI . . . C 2 -26.262 -9.797 21.449 1 36.8 ? C2N NAI 450 A 1 HETATM 38 C C3N NAI . . . C 2 -26.337 -9.267 20.165 1 36.94 ? C3N NAI 450 A 1 HETATM 39 C C7N NAI . . . C 2 -27.174 -8.057 19.87 1 37.39 ? C7N NAI 450 A 1 HETATM 40 O O7N NAI . . . C 2 -27.948 -8.133 18.716 1 42.59 ? O7N NAI 450 A 1 HETATM 41 N N7N NAI . . . C 2 -27.205 -6.972 20.644 1 35.74 ? N7N NAI 450 A 1 HETATM 42 C C4N NAI . . . C 2 -25.486 -9.742 19.174 1 44.6 ? C4N NAI 450 A 1 HETATM 43 C C5N NAI . . . C 2 -24.537 -10.716 19.477 1 43.59 ? C5N NAI 450 A 1 HETATM 44 C C6N NAI . . . C 2 -24.465 -11.207 20.769 1 41.41 ? C6N NAI 450 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #