data_2P9C # _model_server_result.job_id F8svU5BBhLqF3awFWA2V-w _model_server_result.datetime_utc '2025-03-06 10:53:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":451}' # _entry.id 2P9C # _exptl.entry_id 2P9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P9C _cell.length_a 142.142 _cell.length_b 130.785 _cell.length_c 50.188 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 354 n n N H SER sing 355 n n N H2 SER sing 356 n n CA C SER sing 357 n n CA CB SER sing 358 n n CA HA SER sing 359 n n C O SER doub 360 n n C OXT SER sing 361 n n CB OG SER sing 362 n n CB HB2 SER sing 363 n n CB HB3 SER sing 364 n n OG HG SER sing 365 n n OXT HXT SER sing 366 n n # _atom_sites.entry_id 2P9C _atom_sites.fract_transf_matrix[1][1] 0.007035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 450 450 NAI NAI . D 3 SER A 1 451 451 SER SER . E 3 SER A 1 551 551 SER SER . F 2 NAI B 1 550 550 NAI NAI . G 4 HOH A 1 552 1 HOH HOH . G 4 HOH A 2 553 3 HOH HOH . G 4 HOH A 3 554 4 HOH HOH . G 4 HOH A 4 555 5 HOH HOH . G 4 HOH A 5 556 7 HOH HOH . G 4 HOH A 6 557 8 HOH HOH . G 4 HOH A 7 558 9 HOH HOH . G 4 HOH A 8 559 11 HOH HOH . G 4 HOH A 9 560 15 HOH HOH . G 4 HOH A 10 561 17 HOH HOH . G 4 HOH A 11 562 19 HOH HOH . G 4 HOH A 12 563 20 HOH HOH . G 4 HOH A 13 564 21 HOH HOH . G 4 HOH A 14 565 26 HOH HOH . G 4 HOH A 15 566 27 HOH HOH . G 4 HOH A 16 567 28 HOH HOH . G 4 HOH A 17 568 32 HOH HOH . G 4 HOH A 18 569 33 HOH HOH . G 4 HOH A 19 570 34 HOH HOH . G 4 HOH A 20 571 35 HOH HOH . G 4 HOH A 21 572 38 HOH HOH . G 4 HOH A 22 573 39 HOH HOH . G 4 HOH A 23 574 40 HOH HOH . G 4 HOH A 24 575 41 HOH HOH . G 4 HOH A 25 576 42 HOH HOH . G 4 HOH A 26 577 43 HOH HOH . G 4 HOH A 27 578 45 HOH HOH . G 4 HOH A 28 579 46 HOH HOH . G 4 HOH A 29 580 47 HOH HOH . G 4 HOH A 30 581 48 HOH HOH . G 4 HOH A 31 582 51 HOH HOH . G 4 HOH A 32 583 53 HOH HOH . G 4 HOH A 33 584 54 HOH HOH . H 4 HOH B 1 551 2 HOH HOH . H 4 HOH B 2 552 6 HOH HOH . H 4 HOH B 3 553 10 HOH HOH . H 4 HOH B 4 554 12 HOH HOH . H 4 HOH B 5 555 14 HOH HOH . H 4 HOH B 6 556 16 HOH HOH . H 4 HOH B 7 557 18 HOH HOH . H 4 HOH B 8 558 22 HOH HOH . H 4 HOH B 9 559 23 HOH HOH . H 4 HOH B 10 560 24 HOH HOH . H 4 HOH B 11 561 25 HOH HOH . H 4 HOH B 12 562 29 HOH HOH . H 4 HOH B 13 563 30 HOH HOH . H 4 HOH B 14 564 31 HOH HOH . H 4 HOH B 15 565 36 HOH HOH . H 4 HOH B 16 566 37 HOH HOH . H 4 HOH B 17 567 44 HOH HOH . H 4 HOH B 18 568 49 HOH HOH . H 4 HOH B 19 569 50 HOH HOH . H 4 HOH B 20 570 52 HOH HOH . H 4 HOH B 21 571 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . D 3 -25.97 -46.638 24.018 1 31.19 ? N SER 451 A 1 HETATM 2 C CA SER . . . D 3 -24.978 -46.943 22.958 1 34.21 ? CA SER 451 A 1 HETATM 3 C C SER . . . D 3 -25.252 -46.076 21.736 1 36.75 ? C SER 451 A 1 HETATM 4 O O SER . . . D 3 -24.488 -46.063 20.792 1 45.74 ? O SER 451 A 1 HETATM 5 C CB SER . . . D 3 -24.933 -48.462 22.646 1 25.43 ? CB SER 451 A 1 HETATM 6 O OG SER . . . D 3 -24.543 -49.114 23.843 1 27.39 ? OG SER 451 A 1 HETATM 7 O OXT SER . . . D 3 -26.202 -45.306 21.658 1 41.88 ? OXT SER 451 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #