data_2P9E # _model_server_result.job_id 66bnZoPbnWLQkMWSP_wGkg _model_server_result.datetime_utc '2024-12-21 16:40:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":499}' # _entry.id 2P9E # _exptl.entry_id 2P9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P9E _cell.length_a 76.237 _cell.length_b 76.237 _cell.length_c 353.65 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 J N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 T N N ? 2 U N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 357 n n P O2 PO4 sing 358 n n P O3 PO4 sing 359 n n P O4 PO4 sing 360 n n # _atom_sites.entry_id 2P9E _atom_sites.fract_transf_matrix[1][1] 0.013117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 500 500 PO4 PO4 . F 2 PO4 A 1 504 504 PO4 PO4 . G 3 NAI A 1 508 508 NAI NAI . H 4 CIT A 1 514 514 CIT CIT . I 4 CIT A 1 518 518 CIT CIT . J 2 PO4 B 1 499 499 PO4 PO4 . K 2 PO4 B 1 503 503 PO4 PO4 . L 3 NAI B 1 509 509 NAI NAI . M 4 CIT B 1 516 516 CIT CIT . N 2 PO4 C 1 501 501 PO4 PO4 . O 2 PO4 C 1 502 502 PO4 PO4 . P 5 SO4 C 1 506 506 SO4 SO4 . Q 3 NAI C 1 510 510 NAI NAI . R 4 CIT C 1 515 515 CIT CIT . S 4 CIT C 1 517 517 CIT CIT . T 2 PO4 D 1 505 505 PO4 PO4 . U 2 PO4 D 1 507 507 PO4 PO4 . V 3 NAI D 1 511 511 NAI NAI . W 4 CIT D 1 513 513 CIT CIT . X 6 HOH A 1 519 519 HOH HOH . X 6 HOH A 2 520 520 HOH HOH . X 6 HOH A 3 521 521 HOH HOH . X 6 HOH A 4 524 524 HOH HOH . X 6 HOH A 5 525 525 HOH HOH . X 6 HOH A 6 543 543 HOH HOH . X 6 HOH A 7 544 544 HOH HOH . X 6 HOH A 8 545 545 HOH HOH . X 6 HOH A 9 546 546 HOH HOH . X 6 HOH A 10 556 556 HOH HOH . X 6 HOH A 11 557 557 HOH HOH . X 6 HOH A 12 566 566 HOH HOH . X 6 HOH A 13 567 567 HOH HOH . X 6 HOH A 14 570 570 HOH HOH . X 6 HOH A 15 571 571 HOH HOH . X 6 HOH A 16 574 574 HOH HOH . X 6 HOH A 17 575 575 HOH HOH . X 6 HOH A 18 576 576 HOH HOH . X 6 HOH A 19 579 579 HOH HOH . X 6 HOH A 20 580 580 HOH HOH . X 6 HOH A 21 581 581 HOH HOH . X 6 HOH A 22 588 588 HOH HOH . X 6 HOH A 23 596 596 HOH HOH . X 6 HOH A 24 597 597 HOH HOH . Y 6 HOH B 1 522 522 HOH HOH . Y 6 HOH B 2 523 523 HOH HOH . Y 6 HOH B 3 526 526 HOH HOH . Y 6 HOH B 4 527 527 HOH HOH . Y 6 HOH B 5 528 528 HOH HOH . Y 6 HOH B 6 559 559 HOH HOH . Y 6 HOH B 7 560 560 HOH HOH . Y 6 HOH B 8 561 561 HOH HOH . Y 6 HOH B 9 562 562 HOH HOH . Y 6 HOH B 10 563 563 HOH HOH . Y 6 HOH B 11 568 568 HOH HOH . Y 6 HOH B 12 569 569 HOH HOH . Y 6 HOH B 13 582 582 HOH HOH . Y 6 HOH B 14 583 583 HOH HOH . Y 6 HOH B 15 594 594 HOH HOH . Y 6 HOH B 16 598 598 HOH HOH . Z 6 HOH C 1 529 529 HOH HOH . Z 6 HOH C 2 530 530 HOH HOH . Z 6 HOH C 3 531 531 HOH HOH . Z 6 HOH C 4 532 532 HOH HOH . Z 6 HOH C 5 537 537 HOH HOH . Z 6 HOH C 6 539 539 HOH HOH . Z 6 HOH C 7 552 552 HOH HOH . Z 6 HOH C 8 553 553 HOH HOH . Z 6 HOH C 9 554 554 HOH HOH . Z 6 HOH C 10 555 555 HOH HOH . Z 6 HOH C 11 564 564 HOH HOH . Z 6 HOH C 12 584 584 HOH HOH . Z 6 HOH C 13 585 585 HOH HOH . Z 6 HOH C 14 589 589 HOH HOH . Z 6 HOH C 15 593 593 HOH HOH . AA 6 HOH D 1 533 533 HOH HOH . AA 6 HOH D 2 534 534 HOH HOH . AA 6 HOH D 3 535 535 HOH HOH . AA 6 HOH D 4 536 536 HOH HOH . AA 6 HOH D 5 538 538 HOH HOH . AA 6 HOH D 6 540 540 HOH HOH . AA 6 HOH D 7 541 541 HOH HOH . AA 6 HOH D 8 542 542 HOH HOH . AA 6 HOH D 9 547 547 HOH HOH . AA 6 HOH D 10 548 548 HOH HOH . AA 6 HOH D 11 549 549 HOH HOH . AA 6 HOH D 12 550 550 HOH HOH . AA 6 HOH D 13 551 551 HOH HOH . AA 6 HOH D 14 558 558 HOH HOH . AA 6 HOH D 15 565 565 HOH HOH . AA 6 HOH D 16 572 572 HOH HOH . AA 6 HOH D 17 573 573 HOH HOH . AA 6 HOH D 18 577 577 HOH HOH . AA 6 HOH D 19 578 578 HOH HOH . AA 6 HOH D 20 586 586 HOH HOH . AA 6 HOH D 21 587 587 HOH HOH . AA 6 HOH D 22 590 590 HOH HOH . AA 6 HOH D 23 591 591 HOH HOH . AA 6 HOH D 24 592 592 HOH HOH . AA 6 HOH D 25 595 595 HOH HOH . AA 6 HOH D 26 599 599 HOH HOH . AA 6 HOH D 27 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 2 60.102 11.678 -15.507 1 75.45 ? P PO4 499 B 1 HETATM 2 O O1 PO4 . . . J 2 60.322 11.605 -14.011 1 62.27 ? O1 PO4 499 B 1 HETATM 3 O O2 PO4 . . . J 2 59.511 13.043 -15.739 1 71.69 ? O2 PO4 499 B 1 HETATM 4 O O3 PO4 . . . J 2 61.35 11.48 -16.397 1 62.83 ? O3 PO4 499 B 1 HETATM 5 O O4 PO4 . . . J 2 59.117 10.585 -15.863 1 76.26 ? O4 PO4 499 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 698 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 5 #