data_2P9E # _model_server_result.job_id vuBHs5hdKpVqYb4enOQX3Q _model_server_result.datetime_utc '2024-12-21 17:23:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":508}' # _entry.id 2P9E # _exptl.entry_id 2P9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P9E _cell.length_a 76.237 _cell.length_b 76.237 _cell.length_c 353.65 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N ? 3 Q N N ? 3 V N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 257 n n PA O2A NAI sing 258 n n PA O5B NAI sing 259 n n PA O3 NAI sing 260 n n O2A HOA2 NAI sing 261 n n O5B C5B NAI sing 262 n n C5B C4B NAI sing 263 n n C5B H51A NAI sing 264 n n C5B H52A NAI sing 265 n n C4B O4B NAI sing 266 n n C4B C3B NAI sing 267 n n C4B H4B NAI sing 268 n n O4B C1B NAI sing 269 n n C3B O3B NAI sing 270 n n C3B C2B NAI sing 271 n n C3B H3B NAI sing 272 n n O3B HO3A NAI sing 273 n n C2B O2B NAI sing 274 n n C2B C1B NAI sing 275 n n C2B H2B NAI sing 276 n n O2B HO2A NAI sing 277 n n C1B N9A NAI sing 278 n n C1B H1B NAI sing 279 n n N9A C8A NAI sing 280 n y N9A C4A NAI sing 281 n y C8A N7A NAI doub 282 n y C8A H8A NAI sing 283 n n N7A C5A NAI sing 284 n y C5A C6A NAI sing 285 n y C5A C4A NAI doub 286 n y C6A N6A NAI sing 287 n n C6A N1A NAI doub 288 n y N6A H61A NAI sing 289 n n N6A H62A NAI sing 290 n n N1A C2A NAI sing 291 n y C2A N3A NAI doub 292 n y C2A H2A NAI sing 293 n n N3A C4A NAI sing 294 n y O3 PN NAI sing 295 n n PN O1N NAI sing 296 n n PN O2N NAI doub 297 n n PN O5D NAI sing 298 n n O1N HO1N NAI sing 299 n n O5D C5D NAI sing 300 n n C5D C4D NAI sing 301 n n C5D H51N NAI sing 302 n n C5D H52N NAI sing 303 n n C4D O4D NAI sing 304 n n C4D C3D NAI sing 305 n n C4D H4D NAI sing 306 n n O4D C1D NAI sing 307 n n C3D O3D NAI sing 308 n n C3D C2D NAI sing 309 n n C3D H3D NAI sing 310 n n O3D HO3N NAI sing 311 n n C2D O2D NAI sing 312 n n C2D C1D NAI sing 313 n n C2D H2D NAI sing 314 n n O2D HO2N NAI sing 315 n n C1D N1N NAI sing 316 n n C1D H1D NAI sing 317 n n N1N C2N NAI sing 318 n n N1N C6N NAI sing 319 n n C2N C3N NAI doub 320 n n C2N H2N NAI sing 321 n n C3N C7N NAI sing 322 n n C3N C4N NAI sing 323 n n C7N O7N NAI doub 324 n n C7N N7N NAI sing 325 n n N7N H71N NAI sing 326 n n N7N H72N NAI sing 327 n n C4N C5N NAI sing 328 n n C4N H4N NAI sing 329 n n C4N H42N NAI sing 330 n n C5N C6N NAI doub 331 n n C5N H5N NAI sing 332 n n C6N H6N NAI sing 333 n n # _atom_sites.entry_id 2P9E _atom_sites.fract_transf_matrix[1][1] 0.013117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013117 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PO4 A 1 500 500 PO4 PO4 . F 2 PO4 A 1 504 504 PO4 PO4 . G 3 NAI A 1 508 508 NAI NAI . H 4 CIT A 1 514 514 CIT CIT . I 4 CIT A 1 518 518 CIT CIT . J 2 PO4 B 1 499 499 PO4 PO4 . K 2 PO4 B 1 503 503 PO4 PO4 . L 3 NAI B 1 509 509 NAI NAI . M 4 CIT B 1 516 516 CIT CIT . N 2 PO4 C 1 501 501 PO4 PO4 . O 2 PO4 C 1 502 502 PO4 PO4 . P 5 SO4 C 1 506 506 SO4 SO4 . Q 3 NAI C 1 510 510 NAI NAI . R 4 CIT C 1 515 515 CIT CIT . S 4 CIT C 1 517 517 CIT CIT . T 2 PO4 D 1 505 505 PO4 PO4 . U 2 PO4 D 1 507 507 PO4 PO4 . V 3 NAI D 1 511 511 NAI NAI . W 4 CIT D 1 513 513 CIT CIT . X 6 HOH A 1 519 519 HOH HOH . X 6 HOH A 2 520 520 HOH HOH . X 6 HOH A 3 521 521 HOH HOH . X 6 HOH A 4 524 524 HOH HOH . X 6 HOH A 5 525 525 HOH HOH . X 6 HOH A 6 543 543 HOH HOH . X 6 HOH A 7 544 544 HOH HOH . X 6 HOH A 8 545 545 HOH HOH . X 6 HOH A 9 546 546 HOH HOH . X 6 HOH A 10 556 556 HOH HOH . X 6 HOH A 11 557 557 HOH HOH . X 6 HOH A 12 566 566 HOH HOH . X 6 HOH A 13 567 567 HOH HOH . X 6 HOH A 14 570 570 HOH HOH . X 6 HOH A 15 571 571 HOH HOH . X 6 HOH A 16 574 574 HOH HOH . X 6 HOH A 17 575 575 HOH HOH . X 6 HOH A 18 576 576 HOH HOH . X 6 HOH A 19 579 579 HOH HOH . X 6 HOH A 20 580 580 HOH HOH . X 6 HOH A 21 581 581 HOH HOH . X 6 HOH A 22 588 588 HOH HOH . X 6 HOH A 23 596 596 HOH HOH . X 6 HOH A 24 597 597 HOH HOH . Y 6 HOH B 1 522 522 HOH HOH . Y 6 HOH B 2 523 523 HOH HOH . Y 6 HOH B 3 526 526 HOH HOH . Y 6 HOH B 4 527 527 HOH HOH . Y 6 HOH B 5 528 528 HOH HOH . Y 6 HOH B 6 559 559 HOH HOH . Y 6 HOH B 7 560 560 HOH HOH . Y 6 HOH B 8 561 561 HOH HOH . Y 6 HOH B 9 562 562 HOH HOH . Y 6 HOH B 10 563 563 HOH HOH . Y 6 HOH B 11 568 568 HOH HOH . Y 6 HOH B 12 569 569 HOH HOH . Y 6 HOH B 13 582 582 HOH HOH . Y 6 HOH B 14 583 583 HOH HOH . Y 6 HOH B 15 594 594 HOH HOH . Y 6 HOH B 16 598 598 HOH HOH . Z 6 HOH C 1 529 529 HOH HOH . Z 6 HOH C 2 530 530 HOH HOH . Z 6 HOH C 3 531 531 HOH HOH . Z 6 HOH C 4 532 532 HOH HOH . Z 6 HOH C 5 537 537 HOH HOH . Z 6 HOH C 6 539 539 HOH HOH . Z 6 HOH C 7 552 552 HOH HOH . Z 6 HOH C 8 553 553 HOH HOH . Z 6 HOH C 9 554 554 HOH HOH . Z 6 HOH C 10 555 555 HOH HOH . Z 6 HOH C 11 564 564 HOH HOH . Z 6 HOH C 12 584 584 HOH HOH . Z 6 HOH C 13 585 585 HOH HOH . Z 6 HOH C 14 589 589 HOH HOH . Z 6 HOH C 15 593 593 HOH HOH . AA 6 HOH D 1 533 533 HOH HOH . AA 6 HOH D 2 534 534 HOH HOH . AA 6 HOH D 3 535 535 HOH HOH . AA 6 HOH D 4 536 536 HOH HOH . AA 6 HOH D 5 538 538 HOH HOH . AA 6 HOH D 6 540 540 HOH HOH . AA 6 HOH D 7 541 541 HOH HOH . AA 6 HOH D 8 542 542 HOH HOH . AA 6 HOH D 9 547 547 HOH HOH . AA 6 HOH D 10 548 548 HOH HOH . AA 6 HOH D 11 549 549 HOH HOH . AA 6 HOH D 12 550 550 HOH HOH . AA 6 HOH D 13 551 551 HOH HOH . AA 6 HOH D 14 558 558 HOH HOH . AA 6 HOH D 15 565 565 HOH HOH . AA 6 HOH D 16 572 572 HOH HOH . AA 6 HOH D 17 573 573 HOH HOH . AA 6 HOH D 18 577 577 HOH HOH . AA 6 HOH D 19 578 578 HOH HOH . AA 6 HOH D 20 586 586 HOH HOH . AA 6 HOH D 21 587 587 HOH HOH . AA 6 HOH D 22 590 590 HOH HOH . AA 6 HOH D 23 591 591 HOH HOH . AA 6 HOH D 24 592 592 HOH HOH . AA 6 HOH D 25 595 595 HOH HOH . AA 6 HOH D 26 599 599 HOH HOH . AA 6 HOH D 27 600 600 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . G 3 20.111 19.266 -41.749 1 34.54 ? PA NAI 508 A 1 HETATM 2 O O1A NAI . . . G 3 19.249 19.164 -42.933 1 38.92 ? O1A NAI 508 A 1 HETATM 3 O O2A NAI . . . G 3 20.245 17.978 -41.014 1 35.26 ? O2A NAI 508 A 1 HETATM 4 O O5B NAI . . . G 3 19.506 20.448 -40.849 1 33.49 ? O5B NAI 508 A 1 HETATM 5 C C5B NAI . . . G 3 18.864 21.554 -41.458 1 43.97 ? C5B NAI 508 A 1 HETATM 6 C C4B NAI . . . G 3 17.682 22.009 -40.602 1 42.49 ? C4B NAI 508 A 1 HETATM 7 O O4B NAI . . . G 3 17.314 23.361 -40.839 1 51.84 ? O4B NAI 508 A 1 HETATM 8 C C3B NAI . . . G 3 16.427 21.187 -40.822 1 48.16 ? C3B NAI 508 A 1 HETATM 9 O O3B NAI . . . G 3 16.046 20.745 -39.532 1 44.24 ? O3B NAI 508 A 1 HETATM 10 C C2B NAI . . . G 3 15.423 22.182 -41.384 1 43.33 ? C2B NAI 508 A 1 HETATM 11 O O2B NAI . . . G 3 14.135 21.988 -40.882 1 51.83 ? O2B NAI 508 A 1 HETATM 12 C C1B NAI . . . G 3 15.913 23.529 -40.902 1 37.09 ? C1B NAI 508 A 1 HETATM 13 N N9A NAI . . . G 3 15.583 24.622 -41.839 1 35.78 ? N9A NAI 508 A 1 HETATM 14 C C8A NAI . . . G 3 15.351 24.566 -43.194 1 31.33 ? C8A NAI 508 A 1 HETATM 15 N N7A NAI . . . G 3 15.07 25.806 -43.661 1 35.45 ? N7A NAI 508 A 1 HETATM 16 C C5A NAI . . . G 3 15.11 26.668 -42.621 1 31.44 ? C5A NAI 508 A 1 HETATM 17 C C6A NAI . . . G 3 14.909 28.049 -42.537 1 27.78 ? C6A NAI 508 A 1 HETATM 18 N N6A NAI . . . G 3 14.493 28.769 -43.581 1 39.28 ? N6A NAI 508 A 1 HETATM 19 N N1A NAI . . . G 3 15.028 28.658 -41.323 1 27.99 ? N1A NAI 508 A 1 HETATM 20 C C2A NAI . . . G 3 15.318 27.881 -40.214 1 38.26 ? C2A NAI 508 A 1 HETATM 21 N N3A NAI . . . G 3 15.537 26.512 -40.291 1 18.83 ? N3A NAI 508 A 1 HETATM 22 C C4A NAI . . . G 3 15.445 25.926 -41.486 1 32.31 ? C4A NAI 508 A 1 HETATM 23 O O3 NAI . . . G 3 21.58 19.691 -42.246 1 35.8 ? O3 NAI 508 A 1 HETATM 24 P PN NAI . . . G 3 22.953 19.529 -41.407 1 34.35 ? PN NAI 508 A 1 HETATM 25 O O1N NAI . . . G 3 23.64 18.224 -41.583 1 27.71 ? O1N NAI 508 A 1 HETATM 26 O O2N NAI . . . G 3 22.641 20.007 -40.046 1 50.04 ? O2N NAI 508 A 1 HETATM 27 O O5D NAI . . . G 3 23.806 20.687 -42.119 1 30.98 ? O5D NAI 508 A 1 HETATM 28 C C5D NAI . . . G 3 23.291 22.002 -42.091 1 42.42 ? C5D NAI 508 A 1 HETATM 29 C C4D NAI . . . G 3 24.041 22.883 -43.083 1 36.04 ? C4D NAI 508 A 1 HETATM 30 O O4D NAI . . . G 3 25.419 22.853 -42.771 1 41.5 ? O4D NAI 508 A 1 HETATM 31 C C3D NAI . . . G 3 23.897 22.36 -44.502 1 34.47 ? C3D NAI 508 A 1 HETATM 32 O O3D NAI . . . G 3 23.676 23.456 -45.361 1 31.36 ? O3D NAI 508 A 1 HETATM 33 C C2D NAI . . . G 3 25.259 21.797 -44.796 1 34.66 ? C2D NAI 508 A 1 HETATM 34 O O2D NAI . . . G 3 25.615 21.842 -46.159 1 44.56 ? O2D NAI 508 A 1 HETATM 35 C C1D NAI . . . G 3 26.091 22.768 -44.003 1 39.82 ? C1D NAI 508 A 1 HETATM 36 N N1N NAI . . . G 3 27.433 22.222 -43.897 1 44.28 ? N1N NAI 508 A 1 HETATM 37 C C2N NAI . . . G 3 28.522 23.008 -44.182 1 39.72 ? C2N NAI 508 A 1 HETATM 38 C C3N NAI . . . G 3 29.783 22.434 -44.077 1 39.72 ? C3N NAI 508 A 1 HETATM 39 C C7N NAI . . . G 3 30.986 23.26 -43.849 1 47.14 ? C7N NAI 508 A 1 HETATM 40 O O7N NAI . . . G 3 32.142 22.511 -43.607 1 42.25 ? O7N NAI 508 A 1 HETATM 41 N N7N NAI . . . G 3 30.928 24.596 -43.862 1 46.44 ? N7N NAI 508 A 1 HETATM 42 C C4N NAI . . . G 3 29.934 21.115 -43.693 1 36.99 ? C4N NAI 508 A 1 HETATM 43 C C5N NAI . . . G 3 28.815 20.34 -43.417 1 34.25 ? C5N NAI 508 A 1 HETATM 44 C C6N NAI . . . G 3 27.553 20.906 -43.521 1 40.74 ? C6N NAI 508 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #