data_2P9E
#
_model_server_result.job_id            GAWLTCzgQbyKKotExQ1ayg 
_model_server_result.datetime_utc      '2024-12-21 17:07:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2p9e 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":515}' 
#
_entry.id    2P9E 
#
_exptl.entry_id    2P9E 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2P9E 
_cell.length_a            76.237 
_cell.length_b            76.237 
_cell.length_c            353.65 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2P9E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 M N N 
? 4 R N N 
? 4 S N N 
? 4 W N N 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     2P9E 
_atom_sites.fract_transf_matrix[1][1]    0.013117 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013117 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PO4 A 1 500 500 PO4 PO4 . 
F 2 PO4 A 1 504 504 PO4 PO4 . 
G 3 NAI A 1 508 508 NAI NAI . 
H 4 CIT A 1 514 514 CIT CIT . 
I 4 CIT A 1 518 518 CIT CIT . 
J 2 PO4 B 1 499 499 PO4 PO4 . 
K 2 PO4 B 1 503 503 PO4 PO4 . 
L 3 NAI B 1 509 509 NAI NAI . 
M 4 CIT B 1 516 516 CIT CIT . 
N 2 PO4 C 1 501 501 PO4 PO4 . 
O 2 PO4 C 1 502 502 PO4 PO4 . 
P 5 SO4 C 1 506 506 SO4 SO4 . 
Q 3 NAI C 1 510 510 NAI NAI . 
R 4 CIT C 1 515 515 CIT CIT . 
S 4 CIT C 1 517 517 CIT CIT . 
T 2 PO4 D 1 505 505 PO4 PO4 . 
U 2 PO4 D 1 507 507 PO4 PO4 . 
V 3 NAI D 1 511 511 NAI NAI . 
W 4 CIT D 1 513 513 CIT CIT . 
X 6 HOH A 1 519 519 HOH HOH . 
X 6 HOH A 2 520 520 HOH HOH . 
X 6 HOH A 3 521 521 HOH HOH . 
X 6 HOH A 4 524 524 HOH HOH . 
X 6 HOH A 5 525 525 HOH HOH . 
X 6 HOH A 6 543 543 HOH HOH . 
X 6 HOH A 7 544 544 HOH HOH . 
X 6 HOH A 8 545 545 HOH HOH . 
X 6 HOH A 9 546 546 HOH HOH . 
X 6 HOH A 10 556 556 HOH HOH . 
X 6 HOH A 11 557 557 HOH HOH . 
X 6 HOH A 12 566 566 HOH HOH . 
X 6 HOH A 13 567 567 HOH HOH . 
X 6 HOH A 14 570 570 HOH HOH . 
X 6 HOH A 15 571 571 HOH HOH . 
X 6 HOH A 16 574 574 HOH HOH . 
X 6 HOH A 17 575 575 HOH HOH . 
X 6 HOH A 18 576 576 HOH HOH . 
X 6 HOH A 19 579 579 HOH HOH . 
X 6 HOH A 20 580 580 HOH HOH . 
X 6 HOH A 21 581 581 HOH HOH . 
X 6 HOH A 22 588 588 HOH HOH . 
X 6 HOH A 23 596 596 HOH HOH . 
X 6 HOH A 24 597 597 HOH HOH . 
Y 6 HOH B 1 522 522 HOH HOH . 
Y 6 HOH B 2 523 523 HOH HOH . 
Y 6 HOH B 3 526 526 HOH HOH . 
Y 6 HOH B 4 527 527 HOH HOH . 
Y 6 HOH B 5 528 528 HOH HOH . 
Y 6 HOH B 6 559 559 HOH HOH . 
Y 6 HOH B 7 560 560 HOH HOH . 
Y 6 HOH B 8 561 561 HOH HOH . 
Y 6 HOH B 9 562 562 HOH HOH . 
Y 6 HOH B 10 563 563 HOH HOH . 
Y 6 HOH B 11 568 568 HOH HOH . 
Y 6 HOH B 12 569 569 HOH HOH . 
Y 6 HOH B 13 582 582 HOH HOH . 
Y 6 HOH B 14 583 583 HOH HOH . 
Y 6 HOH B 15 594 594 HOH HOH . 
Y 6 HOH B 16 598 598 HOH HOH . 
Z 6 HOH C 1 529 529 HOH HOH . 
Z 6 HOH C 2 530 530 HOH HOH . 
Z 6 HOH C 3 531 531 HOH HOH . 
Z 6 HOH C 4 532 532 HOH HOH . 
Z 6 HOH C 5 537 537 HOH HOH . 
Z 6 HOH C 6 539 539 HOH HOH . 
Z 6 HOH C 7 552 552 HOH HOH . 
Z 6 HOH C 8 553 553 HOH HOH . 
Z 6 HOH C 9 554 554 HOH HOH . 
Z 6 HOH C 10 555 555 HOH HOH . 
Z 6 HOH C 11 564 564 HOH HOH . 
Z 6 HOH C 12 584 584 HOH HOH . 
Z 6 HOH C 13 585 585 HOH HOH . 
Z 6 HOH C 14 589 589 HOH HOH . 
Z 6 HOH C 15 593 593 HOH HOH . 
AA 6 HOH D 1 533 533 HOH HOH . 
AA 6 HOH D 2 534 534 HOH HOH . 
AA 6 HOH D 3 535 535 HOH HOH . 
AA 6 HOH D 4 536 536 HOH HOH . 
AA 6 HOH D 5 538 538 HOH HOH . 
AA 6 HOH D 6 540 540 HOH HOH . 
AA 6 HOH D 7 541 541 HOH HOH . 
AA 6 HOH D 8 542 542 HOH HOH . 
AA 6 HOH D 9 547 547 HOH HOH . 
AA 6 HOH D 10 548 548 HOH HOH . 
AA 6 HOH D 11 549 549 HOH HOH . 
AA 6 HOH D 12 550 550 HOH HOH . 
AA 6 HOH D 13 551 551 HOH HOH . 
AA 6 HOH D 14 558 558 HOH HOH . 
AA 6 HOH D 15 565 565 HOH HOH . 
AA 6 HOH D 16 572 572 HOH HOH . 
AA 6 HOH D 17 573 573 HOH HOH . 
AA 6 HOH D 18 577 577 HOH HOH . 
AA 6 HOH D 19 578 578 HOH HOH . 
AA 6 HOH D 20 586 586 HOH HOH . 
AA 6 HOH D 21 587 587 HOH HOH . 
AA 6 HOH D 22 590 590 HOH HOH . 
AA 6 HOH D 23 591 591 HOH HOH . 
AA 6 HOH D 24 592 592 HOH HOH . 
AA 6 HOH D 25 595 595 HOH HOH . 
AA 6 HOH D 26 599 599 HOH HOH . 
AA 6 HOH D 27 600 600 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . R 4 7.261 28.036 3.583 1 61.67 ? C1 CIT 515 C 1 
HETATM 2 O O1 CIT . . . R 4 7.274 28.555 2.457 1 67.29 ? O1 CIT 515 C 1 
HETATM 3 O O2 CIT . . . R 4 8.365 27.779 4.108 1 73.02 ? O2 CIT 515 C 1 
HETATM 4 C C2 CIT . . . R 4 5.941 27.746 4.285 1 68.86 ? C2 CIT 515 C 1 
HETATM 5 C C3 CIT . . . R 4 4.829 28.044 3.289 1 58.49 ? C3 CIT 515 C 1 
HETATM 6 O O7 CIT . . . R 4 4.931 27.191 2.143 1 47.26 ? O7 CIT 515 C 1 
HETATM 7 C C4 CIT . . . R 4 3.444 27.886 3.893 1 65.42 ? C4 CIT 515 C 1 
HETATM 8 C C5 CIT . . . R 4 2.433 27.92 2.756 1 72.79 ? C5 CIT 515 C 1 
HETATM 9 O O3 CIT . . . R 4 2.734 28.405 1.618 1 44.87 ? O3 CIT 515 C 1 
HETATM 10 O O4 CIT . . . R 4 1.279 27.442 2.959 1 81.32 ? O4 CIT 515 C 1 
HETATM 11 C C6 CIT . . . R 4 5.046 29.431 2.747 1 59.53 ? C6 CIT 515 C 1 
HETATM 12 O O5 CIT . . . R 4 4.924 29.615 1.515 1 62.96 ? O5 CIT 515 C 1 
HETATM 13 O O6 CIT . . . R 4 5.369 30.372 3.519 1 64.91 ? O6 CIT 515 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
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