data_2P9G # _model_server_result.job_id UWkYlSRsjT6ol2afqsUnhw _model_server_result.datetime_utc '2025-03-06 10:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2p9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":550}' # _entry.id 2P9G # _exptl.entry_id 2P9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2P9G _cell.length_a 144.072 _cell.length_b 132.239 _cell.length_c 52.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2P9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 144.072 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 2P9G _atom_sites.fract_transf_matrix[1][1] 0.006941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 450 450 NAI NAI . D 3 SER A 1 451 451 SER SER . E 3 SER A 1 551 551 SER SER . F 2 NAI B 1 550 550 NAI NAI . G 4 HOH A 1 502 502 HOH HOH . G 4 HOH A 2 503 503 HOH HOH . G 4 HOH A 3 504 504 HOH HOH . G 4 HOH A 4 510 510 HOH HOH . G 4 HOH A 5 511 511 HOH HOH . G 4 HOH A 6 517 517 HOH HOH . G 4 HOH A 7 522 522 HOH HOH . G 4 HOH A 8 523 523 HOH HOH . G 4 HOH A 9 524 524 HOH HOH . G 4 HOH A 10 525 525 HOH HOH . G 4 HOH A 11 526 526 HOH HOH . G 4 HOH A 12 527 527 HOH HOH . G 4 HOH A 13 528 528 HOH HOH . G 4 HOH A 14 529 529 HOH HOH . G 4 HOH A 15 530 530 HOH HOH . G 4 HOH A 16 531 531 HOH HOH . G 4 HOH A 17 533 533 HOH HOH . G 4 HOH A 18 534 534 HOH HOH . G 4 HOH A 19 535 535 HOH HOH . G 4 HOH A 20 536 536 HOH HOH . G 4 HOH A 21 538 538 HOH HOH . G 4 HOH A 22 539 539 HOH HOH . G 4 HOH A 23 540 540 HOH HOH . G 4 HOH A 24 541 541 HOH HOH . G 4 HOH A 25 542 542 HOH HOH . G 4 HOH A 26 544 544 HOH HOH . G 4 HOH A 27 545 545 HOH HOH . G 4 HOH A 28 546 546 HOH HOH . G 4 HOH A 29 548 548 HOH HOH . H 4 HOH B 1 501 501 HOH HOH . H 4 HOH B 2 505 505 HOH HOH . H 4 HOH B 3 506 506 HOH HOH . H 4 HOH B 4 507 507 HOH HOH . H 4 HOH B 5 508 508 HOH HOH . H 4 HOH B 6 509 509 HOH HOH . H 4 HOH B 7 512 512 HOH HOH . H 4 HOH B 8 513 513 HOH HOH . H 4 HOH B 9 514 514 HOH HOH . H 4 HOH B 10 515 515 HOH HOH . H 4 HOH B 11 516 516 HOH HOH . H 4 HOH B 12 518 518 HOH HOH . H 4 HOH B 13 519 519 HOH HOH . H 4 HOH B 14 520 520 HOH HOH . H 4 HOH B 15 521 521 HOH HOH . H 4 HOH B 16 532 532 HOH HOH . H 4 HOH B 17 537 537 HOH HOH . H 4 HOH B 18 543 543 HOH HOH . H 4 HOH B 19 547 547 HOH HOH . H 4 HOH B 20 549 549 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . F 2 79.277 -23.985 -16.932 1 40.48 ? PA NAI 550 B 1 HETATM 2 O O1A NAI . . . F 2 78.811 -25.388 -17.002 1 38.98 ? O1A NAI 550 B 1 HETATM 3 O O2A NAI . . . F 2 78.328 -23.106 -16.207 1 34.79 ? O2A NAI 550 B 1 HETATM 4 O O5B NAI . . . F 2 79.552 -23.336 -18.381 1 41.08 ? O5B NAI 550 B 1 HETATM 5 C C5B NAI . . . F 2 80.559 -23.723 -19.29 1 39.64 ? C5B NAI 550 B 1 HETATM 6 C C4B NAI . . . F 2 80.172 -22.988 -20.568 1 40.89 ? C4B NAI 550 B 1 HETATM 7 O O4B NAI . . . F 2 81.12 -23.159 -21.596 1 45.04 ? O4B NAI 550 B 1 HETATM 8 C C3B NAI . . . F 2 78.85 -23.486 -21.113 1 43.84 ? C3B NAI 550 B 1 HETATM 9 O O3B NAI . . . F 2 77.977 -22.388 -21.224 1 46.9 ? O3B NAI 550 B 1 HETATM 10 C C2B NAI . . . F 2 79.183 -24 -22.499 1 47.41 ? C2B NAI 550 B 1 HETATM 11 O O2B NAI . . . F 2 78.311 -23.52 -23.475 1 52.58 ? O2B NAI 550 B 1 HETATM 12 C C1B NAI . . . F 2 80.452 -23.299 -22.819 1 44.31 ? C1B NAI 550 B 1 HETATM 13 N N9A NAI . . . F 2 81.262 -24.196 -23.595 1 42.94 ? N9A NAI 550 B 1 HETATM 14 C C8A NAI . . . F 2 81.355 -25.561 -23.527 1 52.12 ? C8A NAI 550 B 1 HETATM 15 N N7A NAI . . . F 2 82.296 -25.97 -24.427 1 50.29 ? N7A NAI 550 B 1 HETATM 16 C C5A NAI . . . F 2 82.773 -24.87 -25.04 1 41.82 ? C5A NAI 550 B 1 HETATM 17 C C6A NAI . . . F 2 83.719 -24.711 -26.016 1 49.52 ? C6A NAI 550 B 1 HETATM 18 N N6A NAI . . . F 2 84.466 -25.761 -26.363 1 61.45 ? N6A NAI 550 B 1 HETATM 19 N N1A NAI . . . F 2 84.004 -23.425 -26.45 1 49.65 ? N1A NAI 550 B 1 HETATM 20 C C2A NAI . . . F 2 83.338 -22.33 -25.907 1 46.86 ? C2A NAI 550 B 1 HETATM 21 N N3A NAI . . . F 2 82.368 -22.501 -24.934 1 23.22 ? N3A NAI 550 B 1 HETATM 22 C C4A NAI . . . F 2 82.125 -23.753 -24.523 1 41.91 ? C4A NAI 550 B 1 HETATM 23 O O3 NAI . . . F 2 80.744 -23.974 -16.315 1 36.06 ? O3 NAI 550 B 1 HETATM 24 P PN NAI . . . F 2 81.03 -23.346 -14.865 1 45.7 ? PN NAI 550 B 1 HETATM 25 O O1N NAI . . . F 2 80.213 -23.994 -13.782 1 34.72 ? O1N NAI 550 B 1 HETATM 26 O O2N NAI . . . F 2 80.956 -21.878 -15.039 1 48.96 ? O2N NAI 550 B 1 HETATM 27 O O5D NAI . . . F 2 82.578 -23.797 -14.807 1 38.2 ? O5D NAI 550 B 1 HETATM 28 C C5D NAI . . . F 2 83.49 -23.313 -15.758 1 33.38 ? C5D NAI 550 B 1 HETATM 29 C C4D NAI . . . F 2 84.787 -24.132 -15.727 1 47.56 ? C4D NAI 550 B 1 HETATM 30 O O4D NAI . . . F 2 85.691 -23.679 -14.708 1 46.74 ? O4D NAI 550 B 1 HETATM 31 C C3D NAI . . . F 2 84.498 -25.6 -15.482 1 48.94 ? C3D NAI 550 B 1 HETATM 32 O O3D NAI . . . F 2 85.461 -26.365 -16.164 1 55.36 ? O3D NAI 550 B 1 HETATM 33 C C2D NAI . . . F 2 84.809 -25.746 -14.017 1 60.06 ? C2D NAI 550 B 1 HETATM 34 O O2D NAI . . . F 2 85.215 -27.055 -13.685 1 60.86 ? O2D NAI 550 B 1 HETATM 35 C C1D NAI . . . F 2 85.975 -24.773 -13.862 1 59.1 ? C1D NAI 550 B 1 HETATM 36 N N1N NAI . . . F 2 86.179 -24.516 -12.418 1 60.87 ? N1N NAI 550 B 1 HETATM 37 C C2N NAI . . . F 2 87.466 -24.399 -11.945 1 60.59 ? C2N NAI 550 B 1 HETATM 38 C C3N NAI . . . F 2 87.7 -24.193 -10.578 1 64.23 ? C3N NAI 550 B 1 HETATM 39 C C7N NAI . . . F 2 89.077 -23.804 -10.145 1 55.5 ? C7N NAI 550 B 1 HETATM 40 O O7N NAI . . . F 2 89.609 -24.367 -8.982 1 60.93 ? O7N NAI 550 B 1 HETATM 41 N N7N NAI . . . F 2 89.753 -22.929 -10.875 1 50.07 ? N7N NAI 550 B 1 HETATM 42 C C4N NAI . . . F 2 86.628 -24.122 -9.669 1 64.26 ? C4N NAI 550 B 1 HETATM 43 C C5N NAI . . . F 2 85.327 -24.25 -10.165 1 65.47 ? C5N NAI 550 B 1 HETATM 44 C C6N NAI . . . F 2 85.114 -24.46 -11.542 1 62.66 ? C6N NAI 550 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #