data_2PA3
#
_model_server_result.job_id            SqHYtvj1oevwq1kXqKx8AA 
_model_server_result.datetime_utc      '2024-10-18 17:19:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pa3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":450}' 
#
_entry.id    2PA3 
#
_exptl.entry_id    2PA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2PA3 
_cell.length_a            152.789 
_cell.length_b            152.789 
_cell.length_c            163.66 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 76.3945 -132.319155 0 
3 'crystal symmetry operation' 9_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -109.106667 
4 'crystal symmetry operation' 12_544 x,x-y-1,-z-2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 76.3945 -132.319155 -109.106667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     2PA3 
_atom_sites.fract_transf_matrix[1][1]    0.006545 
_atom_sites.fract_transf_matrix[1][2]    0.003779 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007557 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SER A 1 451 451 SER SER . 
C 3 NAI A 1 450 450 NAI NAI . 
D 4 HOH A 1 452 1 HOH HOH . 
D 4 HOH A 2 453 2 HOH HOH . 
D 4 HOH A 3 454 3 HOH HOH . 
D 4 HOH A 4 455 4 HOH HOH . 
D 4 HOH A 5 456 5 HOH HOH . 
D 4 HOH A 6 457 6 HOH HOH . 
D 4 HOH A 7 458 7 HOH HOH . 
D 4 HOH A 8 459 8 HOH HOH . 
D 4 HOH A 9 460 9 HOH HOH . 
D 4 HOH A 10 461 10 HOH HOH . 
D 4 HOH A 11 462 11 HOH HOH . 
D 4 HOH A 12 463 12 HOH HOH . 
D 4 HOH A 13 464 13 HOH HOH . 
D 4 HOH A 14 465 14 HOH HOH . 
D 4 HOH A 15 466 15 HOH HOH . 
D 4 HOH A 16 467 16 HOH HOH . 
D 4 HOH A 17 468 17 HOH HOH . 
D 4 HOH A 18 469 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . C 3 54.056 -64.924 -33.766 1 54.02 ? PA NAI 450 A 1 
HETATM 2 O O1A NAI . . . C 3 54.367 -65.133 -32.314 1 52.52 ? O1A NAI 450 A 1 
HETATM 3 O O2A NAI . . . C 3 52.596 -64.709 -34.07 1 52.34 ? O2A NAI 450 A 1 
HETATM 4 O O5B NAI . . . C 3 54.677 -66.183 -34.518 1 49.62 ? O5B NAI 450 A 1 
HETATM 5 C C5B NAI . . . C 3 55.995 -66.585 -34.185 1 49.75 ? C5B NAI 450 A 1 
HETATM 6 C C4B NAI . . . C 3 56.009 -68.008 -34.756 1 64.83 ? C4B NAI 450 A 1 
HETATM 7 O O4B NAI . . . C 3 57.29 -68.597 -34.725 1 68.1 ? O4B NAI 450 A 1 
HETATM 8 C C3B NAI . . . C 3 55.085 -68.942 -33.985 1 66.68 ? C3B NAI 450 A 1 
HETATM 9 O O3B NAI . . . C 3 54.198 -69.488 -34.939 1 57.8 ? O3B NAI 450 A 1 
HETATM 10 C C2B NAI . . . C 3 56.028 -69.968 -33.349 1 70.55 ? C2B NAI 450 A 1 
HETATM 11 O O2B NAI . . . C 3 55.504 -71.274 -33.285 1 76.24 ? O2B NAI 450 A 1 
HETATM 12 C C1B NAI . . . C 3 57.162 -69.953 -34.337 1 66.32 ? C1B NAI 450 A 1 
HETATM 13 N N9A NAI . . . C 3 58.48 -70.227 -33.81 1 60.61 ? N9A NAI 450 A 1 
HETATM 14 C C8A NAI . . . C 3 59.018 -69.801 -32.634 1 59.59 ? C8A NAI 450 A 1 
HETATM 15 N N7A NAI . . . C 3 60.315 -70.235 -32.627 1 58.79 ? N7A NAI 450 A 1 
HETATM 16 C C5A NAI . . . C 3 60.607 -70.878 -33.781 1 57.32 ? C5A NAI 450 A 1 
HETATM 17 C C6A NAI . . . C 3 61.758 -71.502 -34.289 1 63.63 ? C6A NAI 450 A 1 
HETATM 18 N N6A NAI . . . C 3 62.843 -71.675 -33.536 1 61.14 ? N6A NAI 450 A 1 
HETATM 19 N N1A NAI . . . C 3 61.722 -72.096 -35.546 1 64.96 ? N1A NAI 450 A 1 
HETATM 20 C C2A NAI . . . C 3 60.547 -72.063 -36.277 1 63.36 ? C2A NAI 450 A 1 
HETATM 21 N N3A NAI . . . C 3 59.417 -71.438 -35.767 1 59.45 ? N3A NAI 450 A 1 
HETATM 22 C C4A NAI . . . C 3 59.444 -70.868 -34.538 1 60.89 ? C4A NAI 450 A 1 
HETATM 23 O O3 NAI . . . C 3 55.017 -63.716 -34.298 1 60.57 ? O3 NAI 450 A 1 
HETATM 24 P PN NAI . . . C 3 54.435 -62.56 -35.264 1 54.27 ? PN NAI 450 A 1 
HETATM 25 O O1N NAI . . . C 3 53.578 -61.544 -34.561 1 57.83 ? O1N NAI 450 A 1 
HETATM 26 O O2N NAI . . . C 3 53.819 -63.359 -36.37 1 49.53 ? O2N NAI 450 A 1 
HETATM 27 O O5D NAI . . . C 3 55.836 -61.835 -35.646 1 56.63 ? O5D NAI 450 A 1 
HETATM 28 C C5D NAI . . . C 3 56.953 -62.646 -35.883 1 59.96 ? C5D NAI 450 A 1 
HETATM 29 C C4D NAI . . . C 3 58.211 -61.836 -35.612 1 62.57 ? C4D NAI 450 A 1 
HETATM 30 O O4D NAI . . . C 3 58.253 -60.666 -36.412 1 64.5 ? O4D NAI 450 A 1 
HETATM 31 C C3D NAI . . . C 3 58.262 -61.359 -34.163 1 66.11 ? C3D NAI 450 A 1 
HETATM 32 O O3D NAI . . . C 3 59.59 -61.547 -33.702 1 67.45 ? O3D NAI 450 A 1 
HETATM 33 C C2D NAI . . . C 3 57.988 -59.869 -34.246 1 63.71 ? C2D NAI 450 A 1 
HETATM 34 O O2D NAI . . . C 3 58.656 -59.204 -33.209 1 61.69 ? O2D NAI 450 A 1 
HETATM 35 C C1D NAI . . . C 3 58.628 -59.563 -35.592 1 63.89 ? C1D NAI 450 A 1 
HETATM 36 N N1N NAI . . . C 3 58.217 -58.24 -36.096 1 59.16 ? N1N NAI 450 A 1 
HETATM 37 C C2N NAI . . . C 3 59.107 -57.458 -36.795 1 52.16 ? C2N NAI 450 A 1 
HETATM 38 C C3N NAI . . . C 3 58.671 -56.188 -37.235 1 57.82 ? C3N NAI 450 A 1 
HETATM 39 C C7N NAI . . . C 3 59.537 -55.313 -38.078 1 53.16 ? C7N NAI 450 A 1 
HETATM 40 O O7N NAI . . . C 3 59.335 -53.931 -37.916 1 68.73 ? O7N NAI 450 A 1 
HETATM 41 N N7N NAI . . . C 3 60.412 -55.834 -38.963 1 47.71 ? N7N NAI 450 A 1 
HETATM 42 C C4N NAI . . . C 3 57.384 -55.708 -36.994 1 47.31 ? C4N NAI 450 A 1 
HETATM 43 C C5N NAI . . . C 3 56.496 -56.527 -36.302 1 54.86 ? C5N NAI 450 A 1 
HETATM 44 C C6N NAI . . . C 3 56.94 -57.781 -35.845 1 60.11 ? C6N NAI 450 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           44 
#