data_2PA3 # _model_server_result.job_id bfCx1u2tj9KWNI2AeCi1bA _model_server_result.datetime_utc '2024-10-18 17:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pa3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":451}' # _entry.id 2PA3 # _exptl.entry_id 2PA3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 105.093 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PA3 _cell.length_a 152.789 _cell.length_b 152.789 _cell.length_c 163.66 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PA3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 76.3945 -132.319155 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -109.106667 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-2/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 76.3945 -132.319155 -109.106667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H7 N O3' _chem_comp.formula_weight 105.093 _chem_comp.id SER _chem_comp.mon_nstd_flag y _chem_comp.name SERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SER sing 354 n n N H SER sing 355 n n N H2 SER sing 356 n n CA C SER sing 357 n n CA CB SER sing 358 n n CA HA SER sing 359 n n C O SER doub 360 n n C OXT SER sing 361 n n CB OG SER sing 362 n n CB HB2 SER sing 363 n n CB HB3 SER sing 364 n n OG HG SER sing 365 n n OXT HXT SER sing 366 n n # _atom_sites.entry_id 2PA3 _atom_sites.fract_transf_matrix[1][1] 0.006545 _atom_sites.fract_transf_matrix[1][2] 0.003779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SER A 1 451 451 SER SER . C 3 NAI A 1 450 450 NAI NAI . D 4 HOH A 1 452 1 HOH HOH . D 4 HOH A 2 453 2 HOH HOH . D 4 HOH A 3 454 3 HOH HOH . D 4 HOH A 4 455 4 HOH HOH . D 4 HOH A 5 456 5 HOH HOH . D 4 HOH A 6 457 6 HOH HOH . D 4 HOH A 7 458 7 HOH HOH . D 4 HOH A 8 459 8 HOH HOH . D 4 HOH A 9 460 9 HOH HOH . D 4 HOH A 10 461 10 HOH HOH . D 4 HOH A 11 462 11 HOH HOH . D 4 HOH A 12 463 12 HOH HOH . D 4 HOH A 13 464 13 HOH HOH . D 4 HOH A 14 465 14 HOH HOH . D 4 HOH A 15 466 15 HOH HOH . D 4 HOH A 16 467 16 HOH HOH . D 4 HOH A 17 468 17 HOH HOH . D 4 HOH A 18 469 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SER . . . B 2 48.309 -66.987 -1.652 1 47.42 ? N SER 451 A 1 HETATM 2 C CA SER . . . B 2 46.957 -66.401 -1.933 1 54.36 ? CA SER 451 A 1 HETATM 3 C C SER . . . B 2 47.067 -65.129 -2.776 1 54.65 ? C SER 451 A 1 HETATM 4 O O SER . . . B 2 46.145 -64.273 -2.899 1 58.48 ? O SER 451 A 1 HETATM 5 C CB SER . . . B 2 46.163 -66.242 -0.616 1 38.66 ? CB SER 451 A 1 HETATM 6 O OG SER . . . B 2 46.33 -67.55 -0.027 1 53.35 ? OG SER 451 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #