data_2PAA
#
_model_server_result.job_id            fHPrY7SaVg6n_S5yK0_-8w 
_model_server_result.datetime_utc      '2024-12-21 12:19:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2paa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":500}' 
#
_entry.id    2PAA 
#
_exptl.entry_id    2PAA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.34 
_cell.angle_beta          77.2 
_cell.angle_gamma         85.03 
_cell.entry_id            2PAA 
_cell.length_a            39.854 
_cell.length_b            64.541 
_cell.length_c            75.936 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PAA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 87 n n 
PG O2G ATP sing 88 n n 
PG O3G ATP sing 89 n n 
PG O3B ATP sing 90 n n 
O2G HOG2 ATP sing 91 n n 
O3G HOG3 ATP sing 92 n n 
PB O1B ATP doub 93 n n 
PB O2B ATP sing 94 n n 
PB O3B ATP sing 95 n n 
PB O3A ATP sing 96 n n 
O2B HOB2 ATP sing 97 n n 
PA O1A ATP doub 98 n n 
PA O2A ATP sing 99 n n 
PA O3A ATP sing 100 n n 
PA O5' ATP sing 101 n n 
O2A HOA2 ATP sing 102 n n 
O5' C5' ATP sing 103 n n 
C5' C4' ATP sing 104 n n 
C5' "H5'1" ATP sing 105 n n 
C5' "H5'2" ATP sing 106 n n 
C4' O4' ATP sing 107 n n 
C4' C3' ATP sing 108 n n 
C4' H4' ATP sing 109 n n 
O4' C1' ATP sing 110 n n 
C3' O3' ATP sing 111 n n 
C3' C2' ATP sing 112 n n 
C3' H3' ATP sing 113 n n 
O3' HO3' ATP sing 114 n n 
C2' O2' ATP sing 115 n n 
C2' C1' ATP sing 116 n n 
C2' H2' ATP sing 117 n n 
O2' HO2' ATP sing 118 n n 
C1' N9 ATP sing 119 n n 
C1' H1' ATP sing 120 n n 
N9 C8 ATP sing 121 n y 
N9 C4 ATP sing 122 n y 
C8 N7 ATP doub 123 n y 
C8 H8 ATP sing 124 n n 
N7 C5 ATP sing 125 n y 
C5 C6 ATP sing 126 n y 
C5 C4 ATP doub 127 n y 
C6 N6 ATP sing 128 n n 
C6 N1 ATP doub 129 n y 
N6 HN61 ATP sing 130 n n 
N6 HN62 ATP sing 131 n n 
N1 C2 ATP sing 132 n y 
C2 N3 ATP doub 133 n y 
C2 H2 ATP sing 134 n n 
N3 C4 ATP sing 135 n y 
#
_atom_sites.entry_id                     2PAA 
_atom_sites.fract_transf_matrix[1][1]    0.025092 
_atom_sites.fract_transf_matrix[1][2]    -0.002182 
_atom_sites.fract_transf_matrix[1][3]    -0.005759 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015553 
_atom_sites.fract_transf_matrix[2][3]    0.000402 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013509 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ATP A 1 500 500 ATP ATP . 
D 3 3PG B 1 501 501 3PG 3PG . 
E 4 HOH A 1 501 1 HOH HOH . 
E 4 HOH A 2 502 2 HOH HOH . 
E 4 HOH A 3 503 3 HOH HOH . 
E 4 HOH A 4 504 4 HOH HOH . 
E 4 HOH A 5 505 5 HOH HOH . 
E 4 HOH A 6 506 6 HOH HOH . 
E 4 HOH A 7 507 7 HOH HOH . 
E 4 HOH A 8 508 9 HOH HOH . 
E 4 HOH A 9 509 11 HOH HOH . 
E 4 HOH A 10 510 12 HOH HOH . 
E 4 HOH A 11 511 15 HOH HOH . 
E 4 HOH A 12 512 16 HOH HOH . 
E 4 HOH A 13 513 17 HOH HOH . 
E 4 HOH A 14 514 18 HOH HOH . 
E 4 HOH A 15 515 19 HOH HOH . 
E 4 HOH A 16 516 20 HOH HOH . 
E 4 HOH A 17 517 21 HOH HOH . 
E 4 HOH A 18 518 22 HOH HOH . 
E 4 HOH A 19 519 23 HOH HOH . 
E 4 HOH A 20 520 24 HOH HOH . 
E 4 HOH A 21 521 28 HOH HOH . 
F 4 HOH B 1 502 8 HOH HOH . 
F 4 HOH B 2 503 10 HOH HOH . 
F 4 HOH B 3 504 13 HOH HOH . 
F 4 HOH B 4 505 14 HOH HOH . 
F 4 HOH B 5 506 25 HOH HOH . 
F 4 HOH B 6 507 26 HOH HOH . 
F 4 HOH B 7 508 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 2 -4.961 -7.131 -1.144 1 90 ? PG ATP 500 A 1 
HETATM 2 O O1G ATP . . . C 2 -6.239 -7.051 -0.402 1 90.58 ? O1G ATP 500 A 1 
HETATM 3 O O2G ATP . . . C 2 -4.989 -6.283 -2.514 1 90.24 ? O2G ATP 500 A 1 
HETATM 4 O O3G ATP . . . C 2 -3.721 -6.541 -0.302 1 90.2 ? O3G ATP 500 A 1 
HETATM 5 P PB ATP . . . C 2 -5.623 -9.736 -2.039 1 84.26 ? PB ATP 500 A 1 
HETATM 6 O O1B ATP . . . C 2 -6.989 -9.233 -1.768 1 83.27 ? O1B ATP 500 A 1 
HETATM 7 O O2B ATP . . . C 2 -5.227 -11.036 -1.449 1 83.54 ? O2B ATP 500 A 1 
HETATM 8 O O3B ATP . . . C 2 -4.549 -8.64 -1.54 1 87.3 ? O3B ATP 500 A 1 
HETATM 9 P PA ATP . . . C 2 -5.362 -11.169 -4.458 1 69.92 ? PA ATP 500 A 1 
HETATM 10 O O1A ATP . . . C 2 -4.685 -10.913 -5.75 1 71.01 ? O1A ATP 500 A 1 
HETATM 11 O O2A ATP . . . C 2 -4.836 -12.252 -3.598 1 70.55 ? O2A ATP 500 A 1 
HETATM 12 O O3A ATP . . . C 2 -5.382 -9.784 -3.633 1 77.86 ? O3A ATP 500 A 1 
HETATM 13 O O5' ATP . . . C 2 -6.925 -11.427 -4.738 1 65.94 ? O5' ATP 500 A 1 
HETATM 14 C C5' ATP . . . C 2 -7.858 -10.343 -4.697 1 57.88 ? C5' ATP 500 A 1 
HETATM 15 C C4' ATP . . . C 2 -9.26 -10.875 -4.995 1 53.32 ? C4' ATP 500 A 1 
HETATM 16 O O4' ATP . . . C 2 -9.664 -11.915 -4.096 1 50.72 ? O4' ATP 500 A 1 
HETATM 17 C C3' ATP . . . C 2 -10.375 -9.841 -4.839 1 51.11 ? C3' ATP 500 A 1 
HETATM 18 O O3' ATP . . . C 2 -10.514 -9.107 -6.058 1 49.7 ? O3' ATP 500 A 1 
HETATM 19 C C2' ATP . . . C 2 -11.6 -10.733 -4.619 1 48.47 ? C2' ATP 500 A 1 
HETATM 20 O O2' ATP . . . C 2 -12.469 -10.643 -5.751 1 47.03 ? O2' ATP 500 A 1 
HETATM 21 C C1' ATP . . . C 2 -11.002 -12.141 -4.557 1 47.23 ? C1' ATP 500 A 1 
HETATM 22 N N9 ATP . . . C 2 -11.749 -13.031 -3.644 1 43.77 ? N9 ATP 500 A 1 
HETATM 23 C C8 ATP . . . C 2 -11.931 -12.838 -2.339 1 42.64 ? C8 ATP 500 A 1 
HETATM 24 N N7 ATP . . . C 2 -12.638 -13.844 -1.834 1 40.83 ? N7 ATP 500 A 1 
HETATM 25 C C5 ATP . . . C 2 -12.91 -14.685 -2.825 1 40.63 ? C5 ATP 500 A 1 
HETATM 26 C C6 ATP . . . C 2 -13.595 -15.892 -2.906 1 40.7 ? C6 ATP 500 A 1 
HETATM 27 N N6 ATP . . . C 2 -14.159 -16.42 -1.825 1 38.34 ? N6 ATP 500 A 1 
HETATM 28 N N1 ATP . . . C 2 -13.68 -16.507 -4.093 1 40.1 ? N1 ATP 500 A 1 
HETATM 29 C C2 ATP . . . C 2 -13.127 -15.986 -5.175 1 39.54 ? C2 ATP 500 A 1 
HETATM 30 N N3 ATP . . . C 2 -12.471 -14.842 -5.132 1 39.29 ? N3 ATP 500 A 1 
HETATM 31 C C4 ATP . . . C 2 -12.345 -14.171 -3.98 1 40.64 ? C4 ATP 500 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#