data_2PAD # _model_server_result.job_id gdpdLlfndLvqC7SMYkbnOQ _model_server_result.datetime_utc '2024-12-05 02:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pad # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":213}' # _entry.id 2PAD # _exptl.entry_id 2PAD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 121.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PAD _cell.length_a 45 _cell.length_b 104.3 _cell.length_c 50.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PAD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 B SG CYS . A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 56 A CYS 56 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.694 ? disulf ? disulf4 A SG CYS 153 A CYS 153 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND1 HIS 159 A HIS 159 1_555 B CB CYS . A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? # _chem_comp.formula 'C3 H7 N O2 S' _chem_comp.formula_weight 121.158 _chem_comp.id CYS _chem_comp.mon_nstd_flag y _chem_comp.name CYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA CYS sing 70 n n N H CYS sing 71 n n N H2 CYS sing 72 n n CA C CYS sing 73 n n CA CB CYS sing 74 n n CA HA CYS sing 75 n n C O CYS doub 76 n n C OXT CYS sing 77 n n CB SG CYS sing 78 n n CB HB2 CYS sing 79 n n CB HB3 CYS sing 80 n n SG HG CYS sing 81 n n OXT HXT CYS sing 82 n n # _atom_sites.entry_id 2PAD _atom_sites.fract_transf_matrix[1][1] 0.022222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYS A 1 213 1 CYS CYS . C 3 HOH A 1 214 1 HOH HOH . C 3 HOH A 2 215 2 HOH HOH . C 3 HOH A 3 216 3 HOH HOH . C 3 HOH A 4 217 4 HOH HOH . C 3 HOH A 5 218 5 HOH HOH . C 3 HOH A 6 219 6 HOH HOH . C 3 HOH A 7 220 7 HOH HOH . C 3 HOH A 8 221 8 HOH HOH . C 3 HOH A 9 222 9 HOH HOH . C 3 HOH A 10 223 10 HOH HOH . C 3 HOH A 11 224 11 HOH HOH . C 3 HOH A 12 225 12 HOH HOH . C 3 HOH A 13 226 13 HOH HOH . C 3 HOH A 14 227 14 HOH HOH . C 3 HOH A 15 228 15 HOH HOH . C 3 HOH A 16 229 16 HOH HOH . C 3 HOH A 17 230 17 HOH HOH . C 3 HOH A 18 231 18 HOH HOH . C 3 HOH A 19 232 19 HOH HOH . C 3 HOH A 20 233 20 HOH HOH . C 3 HOH A 21 234 21 HOH HOH . C 3 HOH A 22 235 22 HOH HOH . C 3 HOH A 23 236 23 HOH HOH . C 3 HOH A 24 237 24 HOH HOH . C 3 HOH A 25 238 25 HOH HOH . C 3 HOH A 26 239 26 HOH HOH . C 3 HOH A 27 240 27 HOH HOH . C 3 HOH A 28 241 28 HOH HOH . C 3 HOH A 29 242 29 HOH HOH . C 3 HOH A 30 243 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CYS . . . B 2 29.553 69.482 25.669 1 0 ? N CYS 213 A 1 HETATM 2 C CA CYS . . . B 2 28.315 69.109 25.009 1 0 ? CA CYS 213 A 1 HETATM 3 C C CYS . . . B 2 28.24 67.409 25.417 1 0 ? C CYS 213 A 1 HETATM 4 O O CYS . . . B 2 27.242 66.945 25.959 1 0 ? O CYS 213 A 1 HETATM 5 C CB CYS . . . B 2 28.331 68.952 23.56 1 0 ? CB CYS 213 A 1 HETATM 6 S SG CYS . . . B 2 27.904 70.793 23.098 1 0 ? SG CYS 213 A 1 HETATM 7 O OXT CYS . . . B 2 29.253 66.725 25.229 1 0 ? OXT CYS 213 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #