data_2PAR # _model_server_result.job_id FpFdYHnutY49NGZTZLWmng _model_server_result.datetime_utc '2024-11-20 01:31:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2par # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 2PAR # _exptl.entry_id 2PAR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PAR _cell.length_a 136.136 _cell.length_b 136.136 _cell.length_c 55.418 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PAR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PQS hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 35 A HIS 33 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A NE2 HIS 70 A HIS 68 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 A OD2 ASP 71 A ASP 69 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 A OD1 ASP 139 A ASP 137 1_555 C CO CO . A CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 C CO CO . A CO 201 1_555 D O3P TMP . A TMP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc6 C CO CO . A CO 201 1_555 H O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc7 B NE2 HIS 35 B HIS 33 1_555 F CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 B NE2 HIS 70 B HIS 68 1_555 F CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 B OD2 ASP 71 B ASP 69 1_555 F CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc10 B OD1 ASP 139 B ASP 137 1_555 F CO CO . B CO 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc11 F CO CO . B CO 201 1_555 G O1P TMP . B TMP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc12 F CO CO . B CO 201 1_555 I O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PAR _atom_sites.fract_transf_matrix[1][1] 0.00735 _atom_sites.fract_transf_matrix[1][2] 0.00424 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 201 201 CO CO . D 3 TMP A 1 301 301 TMP TMP . E 4 PEG A 1 401 401 PEG PEG . F 2 CO B 1 201 201 CO CO . G 3 TMP B 1 301 301 TMP TMP . H 5 HOH A 1 402 6 HOH HOH . H 5 HOH A 2 403 7 HOH HOH . H 5 HOH A 3 404 8 HOH HOH . H 5 HOH A 4 405 10 HOH HOH . H 5 HOH A 5 406 11 HOH HOH . H 5 HOH A 6 407 14 HOH HOH . H 5 HOH A 7 408 17 HOH HOH . H 5 HOH A 8 409 18 HOH HOH . H 5 HOH A 9 410 19 HOH HOH . H 5 HOH A 10 411 22 HOH HOH . H 5 HOH A 11 412 26 HOH HOH . H 5 HOH A 12 413 33 HOH HOH . H 5 HOH A 13 414 35 HOH HOH . H 5 HOH A 14 415 40 HOH HOH . H 5 HOH A 15 416 41 HOH HOH . H 5 HOH A 16 417 42 HOH HOH . H 5 HOH A 17 418 43 HOH HOH . H 5 HOH A 18 419 44 HOH HOH . H 5 HOH A 19 420 45 HOH HOH . H 5 HOH A 20 421 46 HOH HOH . H 5 HOH A 21 422 47 HOH HOH . H 5 HOH A 22 423 52 HOH HOH . H 5 HOH A 23 424 54 HOH HOH . H 5 HOH A 24 425 57 HOH HOH . I 5 HOH B 1 302 1 HOH HOH . I 5 HOH B 2 303 2 HOH HOH . I 5 HOH B 3 304 3 HOH HOH . I 5 HOH B 4 305 4 HOH HOH . I 5 HOH B 5 306 9 HOH HOH . I 5 HOH B 6 307 12 HOH HOH . I 5 HOH B 7 308 13 HOH HOH . I 5 HOH B 8 309 16 HOH HOH . I 5 HOH B 9 310 20 HOH HOH . I 5 HOH B 10 311 23 HOH HOH . I 5 HOH B 11 312 24 HOH HOH . I 5 HOH B 12 313 29 HOH HOH . I 5 HOH B 13 314 31 HOH HOH . I 5 HOH B 14 315 32 HOH HOH . I 5 HOH B 15 316 48 HOH HOH . I 5 HOH B 16 317 53 HOH HOH . I 5 HOH B 17 318 55 HOH HOH . I 5 HOH B 18 319 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.76 _atom_site.Cartn_y -11.375 _atom_site.Cartn_z 5.071 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #