data_2PB8
#
_model_server_result.job_id            lSfYIRvVBb_-HHrVhQ-TlQ 
_model_server_result.datetime_utc      '2024-10-14 10:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1210}' 
#
_entry.id    2PB8 
#
_exptl.entry_id    2PB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              59.044 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PB8 
_cell.length_a            53.087 
_cell.length_b            53.087 
_cell.length_c            48.364 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? 
disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C2 H3 O2 -1' 
_chem_comp.formula_weight    59.044 
_chem_comp.id                ACT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACT doub 1 n n 
C OXT ACT sing 2 n n 
C CH3 ACT sing 3 n n 
CH3 H1 ACT sing 4 n n 
CH3 H2 ACT sing 5 n n 
CH3 H3 ACT sing 6 n n 
#
_atom_sites.entry_id                     2PB8 
_atom_sites.fract_transf_matrix[1][1]    0.018837 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018837 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 1209 1209 ACT ACT . 
D 3 ACT A 1 1210 1210 ACT ACT . 
E 4 HOH A 1 1211 1 HOH HOH . 
E 4 HOH A 2 1212 2 HOH HOH . 
E 4 HOH A 3 1213 3 HOH HOH . 
E 4 HOH A 4 1214 4 HOH HOH . 
E 4 HOH A 5 1215 5 HOH HOH . 
E 4 HOH A 6 1216 6 HOH HOH . 
E 4 HOH A 7 1217 7 HOH HOH . 
E 4 HOH A 8 1218 8 HOH HOH . 
E 4 HOH A 9 1219 9 HOH HOH . 
E 4 HOH A 10 1220 10 HOH HOH . 
E 4 HOH A 11 1221 11 HOH HOH . 
E 4 HOH A 12 1222 12 HOH HOH . 
E 4 HOH A 13 1223 13 HOH HOH . 
E 4 HOH A 14 1224 14 HOH HOH . 
E 4 HOH A 15 1225 15 HOH HOH . 
E 4 HOH A 16 1226 16 HOH HOH . 
E 4 HOH A 17 1227 17 HOH HOH . 
E 4 HOH A 18 1228 18 HOH HOH . 
E 4 HOH A 19 1229 19 HOH HOH . 
E 4 HOH A 20 1230 20 HOH HOH . 
E 4 HOH A 21 1231 21 HOH HOH . 
E 4 HOH A 22 1232 22 HOH HOH . 
E 4 HOH A 23 1233 23 HOH HOH . 
E 4 HOH A 24 1234 25 HOH HOH . 
E 4 HOH A 25 1235 26 HOH HOH . 
E 4 HOH A 26 1236 27 HOH HOH . 
E 4 HOH A 27 1237 28 HOH HOH . 
E 4 HOH A 28 1238 29 HOH HOH . 
E 4 HOH A 29 1239 30 HOH HOH . 
E 4 HOH A 30 1240 31 HOH HOH . 
E 4 HOH A 31 1241 32 HOH HOH . 
E 4 HOH A 32 1242 33 HOH HOH . 
E 4 HOH A 33 1243 34 HOH HOH . 
E 4 HOH A 34 1244 35 HOH HOH . 
E 4 HOH A 35 1245 36 HOH HOH . 
E 4 HOH A 36 1246 37 HOH HOH . 
E 4 HOH A 37 1247 38 HOH HOH . 
E 4 HOH A 38 1248 39 HOH HOH . 
E 4 HOH A 39 1249 40 HOH HOH . 
E 4 HOH A 40 1250 41 HOH HOH . 
E 4 HOH A 41 1251 42 HOH HOH . 
E 4 HOH A 42 1252 43 HOH HOH . 
E 4 HOH A 43 1253 44 HOH HOH . 
E 4 HOH A 44 1254 45 HOH HOH . 
E 4 HOH A 45 1255 46 HOH HOH . 
E 4 HOH A 46 1256 47 HOH HOH . 
E 4 HOH A 47 1257 48 HOH HOH . 
E 4 HOH A 48 1258 49 HOH HOH . 
E 4 HOH A 49 1259 50 HOH HOH . 
E 4 HOH A 50 1260 51 HOH HOH . 
E 4 HOH A 51 1261 52 HOH HOH . 
E 4 HOH A 52 1262 53 HOH HOH . 
E 4 HOH A 53 1263 54 HOH HOH . 
E 4 HOH A 54 1264 55 HOH HOH . 
E 4 HOH A 55 1265 56 HOH HOH . 
E 4 HOH A 56 1266 57 HOH HOH . 
E 4 HOH A 57 1267 58 HOH HOH . 
E 4 HOH A 58 1268 59 HOH HOH . 
E 4 HOH A 59 1269 60 HOH HOH . 
E 4 HOH A 60 1270 61 HOH HOH . 
E 4 HOH A 61 1271 62 HOH HOH . 
E 4 HOH A 62 1272 63 HOH HOH . 
E 4 HOH A 63 1273 64 HOH HOH . 
E 4 HOH A 64 1274 65 HOH HOH . 
E 4 HOH A 65 1275 66 HOH HOH . 
E 4 HOH A 66 1276 67 HOH HOH . 
E 4 HOH A 67 1277 68 HOH HOH . 
E 4 HOH A 68 1278 69 HOH HOH . 
E 4 HOH A 69 1279 70 HOH HOH . 
E 4 HOH A 70 1280 71 HOH HOH . 
E 4 HOH A 71 1281 73 HOH HOH . 
E 4 HOH A 72 1282 74 HOH HOH . 
E 4 HOH A 73 1283 75 HOH HOH . 
E 4 HOH A 74 1284 76 HOH HOH . 
E 4 HOH A 75 1285 77 HOH HOH . 
E 4 HOH A 76 1286 78 HOH HOH . 
E 4 HOH A 77 1287 79 HOH HOH . 
E 4 HOH A 78 1288 80 HOH HOH . 
E 4 HOH A 79 1289 81 HOH HOH . 
E 4 HOH A 80 1290 82 HOH HOH . 
E 4 HOH A 81 1291 83 HOH HOH . 
E 4 HOH A 82 1292 84 HOH HOH . 
E 4 HOH A 83 1293 85 HOH HOH . 
E 4 HOH A 84 1294 86 HOH HOH . 
E 4 HOH A 85 1295 87 HOH HOH . 
E 4 HOH A 86 1296 88 HOH HOH . 
E 4 HOH A 87 1297 89 HOH HOH . 
E 4 HOH A 88 1298 90 HOH HOH . 
E 4 HOH A 89 1299 91 HOH HOH . 
E 4 HOH A 90 1300 92 HOH HOH . 
E 4 HOH A 91 1301 93 HOH HOH . 
E 4 HOH A 92 1302 94 HOH HOH . 
E 4 HOH A 93 1303 95 HOH HOH . 
F 4 HOH P 1 24 24 HOH HOH . 
F 4 HOH P 2 72 72 HOH HOH . 
F 4 HOH P 3 96 96 HOH HOH . 
F 4 HOH P 4 97 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACT . . . D 3 19.715 42.707 -8.196 1 98.61 ? C ACT 1210 A 1 
HETATM 2 O O ACT . . . D 3 20.946 42.76 -8.397 1 98.56 ? O ACT 1210 A 1 
HETATM 3 O OXT ACT . . . D 3 19.092 43.779 -8.359 1 98.56 ? OXT ACT 1210 A 1 
HETATM 4 C CH3 ACT . . . D 3 19.035 41.433 -7.786 1 98.62 ? CH3 ACT 1210 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#