data_2PD3
#
_model_server_result.job_id            XfrOfCKYPLUqlps26veuAA 
_model_server_result.datetime_utc      '2024-11-27 23:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pd3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3414}' 
#
_entry.id    2PD3 
#
_exptl.entry_id    2PD3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              289.542 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            TRICLOSAN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.21 
_cell.angle_gamma         90 
_cell.entry_id            2PD3 
_cell.length_a            73.353 
_cell.length_b            94.911 
_cell.length_c            75.376 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PD3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C12 H7 Cl3 O2' 
_chem_comp.formula_weight    289.542 
_chem_comp.id                TCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              TRICLOSAN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TCL doub 365 n y 
C1 C6 TCL sing 366 n y 
C1 H11 TCL sing 367 n n 
C2 C3 TCL sing 368 n y 
C2 CL14 TCL sing 369 n n 
C6 C5 TCL doub 370 n y 
C6 O17 TCL sing 371 n n 
C5 C4 TCL sing 372 n y 
C5 O7 TCL sing 373 n n 
C4 C3 TCL doub 374 n y 
C4 H41 TCL sing 375 n n 
C3 H31 TCL sing 376 n n 
C11 C10 TCL doub 377 n y 
C11 C12 TCL sing 378 n y 
C11 CL15 TCL sing 379 n n 
C10 C9 TCL sing 380 n y 
C10 H101 TCL sing 381 n n 
C9 C8 TCL doub 382 n y 
C9 CL16 TCL sing 383 n n 
C8 C13 TCL sing 384 n y 
C8 O7 TCL sing 385 n n 
C12 C13 TCL doub 386 n y 
C12 H121 TCL sing 387 n n 
C13 H131 TCL sing 388 n n 
O17 H171 TCL sing 389 n n 
#
_atom_sites.entry_id                     2PD3 
_atom_sites.fract_transf_matrix[1][1]    0.013633 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003963 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013816 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 1780 1780 NAD NAD . 
F 3 TCL A 1 2414 2414 TCL TCL . 
G 2 NAD B 1 2780 2780 NAD NAD . 
H 3 TCL B 1 3414 3414 TCL TCL . 
I 2 NAD C 1 3780 3780 NAD NAD . 
J 3 TCL C 1 4414 4414 TCL TCL . 
K 2 NAD D 1 4780 4780 NAD NAD . 
L 3 TCL D 1 5414 5414 TCL TCL . 
M 4 HOH A 1 2415 4 HOH HOH . 
M 4 HOH A 2 2416 5 HOH HOH . 
M 4 HOH A 3 2417 7 HOH HOH . 
M 4 HOH A 4 2418 8 HOH HOH . 
M 4 HOH A 5 2419 9 HOH HOH . 
M 4 HOH A 6 2420 11 HOH HOH . 
M 4 HOH A 7 2421 16 HOH HOH . 
M 4 HOH A 8 2422 28 HOH HOH . 
M 4 HOH A 9 2423 30 HOH HOH . 
M 4 HOH A 10 2424 37 HOH HOH . 
M 4 HOH A 11 2425 50 HOH HOH . 
M 4 HOH A 12 2426 58 HOH HOH . 
M 4 HOH A 13 2427 60 HOH HOH . 
M 4 HOH A 14 2428 69 HOH HOH . 
M 4 HOH A 15 2429 74 HOH HOH . 
M 4 HOH A 16 2430 81 HOH HOH . 
M 4 HOH A 17 2431 87 HOH HOH . 
M 4 HOH A 18 2432 92 HOH HOH . 
M 4 HOH A 19 2433 100 HOH HOH . 
M 4 HOH A 20 2434 104 HOH HOH . 
M 4 HOH A 21 2435 107 HOH HOH . 
M 4 HOH A 22 2436 112 HOH HOH . 
M 4 HOH A 23 2437 114 HOH HOH . 
M 4 HOH A 24 2438 120 HOH HOH . 
M 4 HOH A 25 2439 126 HOH HOH . 
M 4 HOH A 26 2440 127 HOH HOH . 
M 4 HOH A 27 2441 133 HOH HOH . 
M 4 HOH A 28 2442 135 HOH HOH . 
M 4 HOH A 29 2443 143 HOH HOH . 
M 4 HOH A 30 2444 151 HOH HOH . 
M 4 HOH A 31 2445 154 HOH HOH . 
M 4 HOH A 32 2446 159 HOH HOH . 
M 4 HOH A 33 2447 169 HOH HOH . 
M 4 HOH A 34 2448 183 HOH HOH . 
M 4 HOH A 35 2449 188 HOH HOH . 
M 4 HOH A 36 2450 195 HOH HOH . 
M 4 HOH A 37 2451 201 HOH HOH . 
M 4 HOH A 38 2452 207 HOH HOH . 
M 4 HOH A 39 2453 208 HOH HOH . 
M 4 HOH A 40 2454 211 HOH HOH . 
N 4 HOH B 1 3415 3 HOH HOH . 
N 4 HOH B 2 3416 12 HOH HOH . 
N 4 HOH B 3 3417 17 HOH HOH . 
N 4 HOH B 4 3418 18 HOH HOH . 
N 4 HOH B 5 3419 19 HOH HOH . 
N 4 HOH B 6 3420 20 HOH HOH . 
N 4 HOH B 7 3421 22 HOH HOH . 
N 4 HOH B 8 3422 23 HOH HOH . 
N 4 HOH B 9 3423 27 HOH HOH . 
N 4 HOH B 10 3424 29 HOH HOH . 
N 4 HOH B 11 3425 33 HOH HOH . 
N 4 HOH B 12 3426 40 HOH HOH . 
N 4 HOH B 13 3427 41 HOH HOH . 
N 4 HOH B 14 3428 44 HOH HOH . 
N 4 HOH B 15 3429 45 HOH HOH . 
N 4 HOH B 16 3430 46 HOH HOH . 
N 4 HOH B 17 3431 47 HOH HOH . 
N 4 HOH B 18 3432 51 HOH HOH . 
N 4 HOH B 19 3433 56 HOH HOH . 
N 4 HOH B 20 3434 57 HOH HOH . 
N 4 HOH B 21 3435 61 HOH HOH . 
N 4 HOH B 22 3436 62 HOH HOH . 
N 4 HOH B 23 3437 63 HOH HOH . 
N 4 HOH B 24 3438 82 HOH HOH . 
N 4 HOH B 25 3439 83 HOH HOH . 
N 4 HOH B 26 3440 90 HOH HOH . 
N 4 HOH B 27 3441 91 HOH HOH . 
N 4 HOH B 28 3442 93 HOH HOH . 
N 4 HOH B 29 3443 94 HOH HOH . 
N 4 HOH B 30 3444 96 HOH HOH . 
N 4 HOH B 31 3445 101 HOH HOH . 
N 4 HOH B 32 3446 116 HOH HOH . 
N 4 HOH B 33 3447 118 HOH HOH . 
N 4 HOH B 34 3448 119 HOH HOH . 
N 4 HOH B 35 3449 129 HOH HOH . 
N 4 HOH B 36 3450 136 HOH HOH . 
N 4 HOH B 37 3451 137 HOH HOH . 
N 4 HOH B 38 3452 144 HOH HOH . 
N 4 HOH B 39 3453 146 HOH HOH . 
N 4 HOH B 40 3454 147 HOH HOH . 
N 4 HOH B 41 3455 152 HOH HOH . 
N 4 HOH B 42 3456 153 HOH HOH . 
N 4 HOH B 43 3457 155 HOH HOH . 
N 4 HOH B 44 3458 164 HOH HOH . 
N 4 HOH B 45 3459 171 HOH HOH . 
N 4 HOH B 46 3460 173 HOH HOH . 
N 4 HOH B 47 3461 174 HOH HOH . 
N 4 HOH B 48 3462 176 HOH HOH . 
N 4 HOH B 49 3463 181 HOH HOH . 
N 4 HOH B 50 3464 189 HOH HOH . 
N 4 HOH B 51 3465 191 HOH HOH . 
N 4 HOH B 52 3466 196 HOH HOH . 
N 4 HOH B 53 3467 198 HOH HOH . 
N 4 HOH B 54 3468 202 HOH HOH . 
N 4 HOH B 55 3469 205 HOH HOH . 
N 4 HOH B 56 3470 210 HOH HOH . 
O 4 HOH C 1 4415 6 HOH HOH . 
O 4 HOH C 2 4416 14 HOH HOH . 
O 4 HOH C 3 4417 15 HOH HOH . 
O 4 HOH C 4 4418 21 HOH HOH . 
O 4 HOH C 5 4419 24 HOH HOH . 
O 4 HOH C 6 4420 35 HOH HOH . 
O 4 HOH C 7 4421 36 HOH HOH . 
O 4 HOH C 8 4422 42 HOH HOH . 
O 4 HOH C 9 4423 48 HOH HOH . 
O 4 HOH C 10 4424 52 HOH HOH . 
O 4 HOH C 11 4425 55 HOH HOH . 
O 4 HOH C 12 4426 64 HOH HOH . 
O 4 HOH C 13 4427 66 HOH HOH . 
O 4 HOH C 14 4428 67 HOH HOH . 
O 4 HOH C 15 4429 71 HOH HOH . 
O 4 HOH C 16 4430 73 HOH HOH . 
O 4 HOH C 17 4431 76 HOH HOH . 
O 4 HOH C 18 4432 77 HOH HOH . 
O 4 HOH C 19 4433 78 HOH HOH . 
O 4 HOH C 20 4434 79 HOH HOH . 
O 4 HOH C 21 4435 80 HOH HOH . 
O 4 HOH C 22 4436 84 HOH HOH . 
O 4 HOH C 23 4437 86 HOH HOH . 
O 4 HOH C 24 4438 88 HOH HOH . 
O 4 HOH C 25 4439 97 HOH HOH . 
O 4 HOH C 26 4440 99 HOH HOH . 
O 4 HOH C 27 4441 102 HOH HOH . 
O 4 HOH C 28 4442 103 HOH HOH . 
O 4 HOH C 29 4443 106 HOH HOH . 
O 4 HOH C 30 4444 108 HOH HOH . 
O 4 HOH C 31 4445 109 HOH HOH . 
O 4 HOH C 32 4446 111 HOH HOH . 
O 4 HOH C 33 4447 113 HOH HOH . 
O 4 HOH C 34 4448 115 HOH HOH . 
O 4 HOH C 35 4449 117 HOH HOH . 
O 4 HOH C 36 4450 121 HOH HOH . 
O 4 HOH C 37 4451 124 HOH HOH . 
O 4 HOH C 38 4452 130 HOH HOH . 
O 4 HOH C 39 4453 139 HOH HOH . 
O 4 HOH C 40 4454 148 HOH HOH . 
O 4 HOH C 41 4455 149 HOH HOH . 
O 4 HOH C 42 4456 150 HOH HOH . 
O 4 HOH C 43 4457 156 HOH HOH . 
O 4 HOH C 44 4458 158 HOH HOH . 
O 4 HOH C 45 4459 160 HOH HOH . 
O 4 HOH C 46 4460 162 HOH HOH . 
O 4 HOH C 47 4461 163 HOH HOH . 
O 4 HOH C 48 4462 165 HOH HOH . 
O 4 HOH C 49 4463 172 HOH HOH . 
O 4 HOH C 50 4464 175 HOH HOH . 
O 4 HOH C 51 4465 178 HOH HOH . 
O 4 HOH C 52 4466 180 HOH HOH . 
O 4 HOH C 53 4467 185 HOH HOH . 
O 4 HOH C 54 4468 186 HOH HOH . 
O 4 HOH C 55 4469 192 HOH HOH . 
O 4 HOH C 56 4470 194 HOH HOH . 
O 4 HOH C 57 4471 199 HOH HOH . 
O 4 HOH C 58 4472 204 HOH HOH . 
O 4 HOH C 59 4473 206 HOH HOH . 
P 4 HOH D 1 5415 1 HOH HOH . 
P 4 HOH D 2 5416 2 HOH HOH . 
P 4 HOH D 3 5417 10 HOH HOH . 
P 4 HOH D 4 5418 13 HOH HOH . 
P 4 HOH D 5 5419 25 HOH HOH . 
P 4 HOH D 6 5420 26 HOH HOH . 
P 4 HOH D 7 5421 31 HOH HOH . 
P 4 HOH D 8 5422 32 HOH HOH . 
P 4 HOH D 9 5423 34 HOH HOH . 
P 4 HOH D 10 5424 38 HOH HOH . 
P 4 HOH D 11 5425 39 HOH HOH . 
P 4 HOH D 12 5426 43 HOH HOH . 
P 4 HOH D 13 5427 49 HOH HOH . 
P 4 HOH D 14 5428 53 HOH HOH . 
P 4 HOH D 15 5429 54 HOH HOH . 
P 4 HOH D 16 5430 59 HOH HOH . 
P 4 HOH D 17 5431 65 HOH HOH . 
P 4 HOH D 18 5432 68 HOH HOH . 
P 4 HOH D 19 5433 70 HOH HOH . 
P 4 HOH D 20 5434 72 HOH HOH . 
P 4 HOH D 21 5435 75 HOH HOH . 
P 4 HOH D 22 5436 85 HOH HOH . 
P 4 HOH D 23 5437 89 HOH HOH . 
P 4 HOH D 24 5438 95 HOH HOH . 
P 4 HOH D 25 5439 98 HOH HOH . 
P 4 HOH D 26 5440 105 HOH HOH . 
P 4 HOH D 27 5441 110 HOH HOH . 
P 4 HOH D 28 5442 122 HOH HOH . 
P 4 HOH D 29 5443 123 HOH HOH . 
P 4 HOH D 30 5444 125 HOH HOH . 
P 4 HOH D 31 5445 128 HOH HOH . 
P 4 HOH D 32 5446 131 HOH HOH . 
P 4 HOH D 33 5447 132 HOH HOH . 
P 4 HOH D 34 5448 134 HOH HOH . 
P 4 HOH D 35 5449 138 HOH HOH . 
P 4 HOH D 36 5450 140 HOH HOH . 
P 4 HOH D 37 5451 141 HOH HOH . 
P 4 HOH D 38 5452 142 HOH HOH . 
P 4 HOH D 39 5453 145 HOH HOH . 
P 4 HOH D 40 5454 157 HOH HOH . 
P 4 HOH D 41 5455 161 HOH HOH . 
P 4 HOH D 42 5456 166 HOH HOH . 
P 4 HOH D 43 5457 167 HOH HOH . 
P 4 HOH D 44 5458 168 HOH HOH . 
P 4 HOH D 45 5459 170 HOH HOH . 
P 4 HOH D 46 5460 177 HOH HOH . 
P 4 HOH D 47 5461 179 HOH HOH . 
P 4 HOH D 48 5462 182 HOH HOH . 
P 4 HOH D 49 5463 184 HOH HOH . 
P 4 HOH D 50 5464 187 HOH HOH . 
P 4 HOH D 51 5465 190 HOH HOH . 
P 4 HOH D 52 5466 193 HOH HOH . 
P 4 HOH D 53 5467 197 HOH HOH . 
P 4 HOH D 54 5468 200 HOH HOH . 
P 4 HOH D 55 5469 203 HOH HOH . 
P 4 HOH D 56 5470 209 HOH HOH . 
P 4 HOH D 57 5471 212 HOH HOH . 
P 4 HOH D 58 5472 213 HOH HOH . 
P 4 HOH D 59 5473 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TCL . . . H 3 21.41 33.53 4.752 1 34.36 ? C1 TCL 3414 B 1 
HETATM 2 C C2 TCL . . . H 3 21.825 34.816 4.412 1 33.87 ? C2 TCL 3414 B 1 
HETATM 3 C C6 TCL . . . H 3 20.412 32.925 4.01 1 34.8 ? C6 TCL 3414 B 1 
HETATM 4 C C5 TCL . . . H 3 19.82 33.666 2.869 1 35.28 ? C5 TCL 3414 B 1 
HETATM 5 C C4 TCL . . . H 3 20.267 34.957 2.566 1 34.88 ? C4 TCL 3414 B 1 
HETATM 6 C C3 TCL . . . H 3 21.272 35.53 3.345 1 34.15 ? C3 TCL 3414 B 1 
HETATM 7 C C11 TCL . . . H 3 14.874 33.962 2.925 1 33.98 ? C11 TCL 3414 B 1 
HETATM 8 C C10 TCL . . . H 3 15.172 33.372 1.706 1 33.94 ? C10 TCL 3414 B 1 
HETATM 9 C C9 TCL . . . H 3 16.488 33.06 1.416 1 33.87 ? C9 TCL 3414 B 1 
HETATM 10 C C8 TCL . . . H 3 17.533 33.366 2.419 1 34.84 ? C8 TCL 3414 B 1 
HETATM 11 C C12 TCL . . . H 3 15.851 34.25 3.874 1 35.04 ? C12 TCL 3414 B 1 
HETATM 12 C C13 TCL . . . H 3 17.183 33.958 3.634 1 34.83 ? C13 TCL 3414 B 1 
HETATM 13 O O7 TCL . . . H 3 18.832 33.069 2.139 1 35.11 ? O7 TCL 3414 B 1 
HETATM 14 CL CL14 TCL . . . H 3 23.117 35.55 5.389 1 30.67 ? CL14 TCL 3414 B 1 
HETATM 15 CL CL15 TCL . . . H 3 13.18 34.361 3.285 1 32.44 ? CL15 TCL 3414 B 1 
HETATM 16 CL CL16 TCL . . . H 3 16.92 32.308 -0.147 1 32.12 ? CL16 TCL 3414 B 1 
HETATM 17 O O17 TCL . . . H 3 19.979 31.683 4.324 1 35.01 ? O17 TCL 3414 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           905 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           17 
#