data_2PD4
#
_model_server_result.job_id            QXHSrck0hMBG15FQ6t6wXg 
_model_server_result.datetime_utc      '2024-10-13 22:18:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pd4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3414}' 
#
_entry.id    2PD4 
#
_exptl.entry_id    2PD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              255.097 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DICLOSAN 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.53 
_cell.angle_gamma         90 
_cell.entry_id            2PD4 
_cell.length_a            73.253 
_cell.length_b            95.072 
_cell.length_c            75.019 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C12 H8 Cl2 O2' 
_chem_comp.formula_weight    255.097 
_chem_comp.id                DCN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DICLOSAN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DCN doub 83 n y 
C1 C6 DCN sing 84 n y 
C1 H1 DCN sing 85 n n 
C2 C3 DCN sing 86 n y 
C2 CL14 DCN sing 87 n n 
C6 C5 DCN doub 88 n y 
C6 O17 DCN sing 89 n n 
C5 C4 DCN sing 90 n y 
C5 O7 DCN sing 91 n n 
C4 C3 DCN doub 92 n y 
C4 H4 DCN sing 93 n n 
C3 H3 DCN sing 94 n n 
C11 C10 DCN doub 95 n y 
C11 C12 DCN sing 96 n y 
C11 CL15 DCN sing 97 n n 
C10 C9 DCN sing 98 n y 
C10 H10 DCN sing 99 n n 
C9 C8 DCN doub 100 n y 
C9 H9 DCN sing 101 n n 
C8 C13 DCN sing 102 n y 
C8 O7 DCN sing 103 n n 
C12 C13 DCN doub 104 n y 
C12 H12 DCN sing 105 n n 
C13 H13 DCN sing 106 n n 
O17 H17 DCN sing 107 n n 
#
_atom_sites.entry_id                     2PD4 
_atom_sites.fract_transf_matrix[1][1]    0.013651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004051 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013905 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 1780 1780 NAD NAD . 
F 3 DCN A 1 2414 2414 DCN DCN . 
G 2 NAD B 1 2780 2780 NAD NAD . 
H 3 DCN B 1 3414 3414 DCN DCN . 
I 2 NAD C 1 3780 3780 NAD NAD . 
J 3 DCN C 1 4414 4414 DCN DCN . 
K 2 NAD D 1 4780 4780 NAD NAD . 
L 3 DCN D 1 5414 5414 DCN DCN . 
M 4 HOH A 1 2415 1 HOH HOH . 
M 4 HOH A 2 2416 6 HOH HOH . 
M 4 HOH A 3 2417 12 HOH HOH . 
M 4 HOH A 4 2418 13 HOH HOH . 
M 4 HOH A 5 2419 14 HOH HOH . 
M 4 HOH A 6 2420 16 HOH HOH . 
M 4 HOH A 7 2421 26 HOH HOH . 
M 4 HOH A 8 2422 30 HOH HOH . 
M 4 HOH A 9 2423 36 HOH HOH . 
M 4 HOH A 10 2424 37 HOH HOH . 
M 4 HOH A 11 2425 41 HOH HOH . 
M 4 HOH A 12 2426 46 HOH HOH . 
M 4 HOH A 13 2427 48 HOH HOH . 
M 4 HOH A 14 2428 50 HOH HOH . 
M 4 HOH A 15 2429 51 HOH HOH . 
M 4 HOH A 16 2430 55 HOH HOH . 
M 4 HOH A 17 2431 56 HOH HOH . 
M 4 HOH A 18 2432 60 HOH HOH . 
M 4 HOH A 19 2433 64 HOH HOH . 
M 4 HOH A 20 2434 68 HOH HOH . 
M 4 HOH A 21 2435 70 HOH HOH . 
M 4 HOH A 22 2436 76 HOH HOH . 
M 4 HOH A 23 2437 81 HOH HOH . 
M 4 HOH A 24 2438 87 HOH HOH . 
M 4 HOH A 25 2439 98 HOH HOH . 
M 4 HOH A 26 2440 99 HOH HOH . 
M 4 HOH A 27 2441 102 HOH HOH . 
M 4 HOH A 28 2442 106 HOH HOH . 
M 4 HOH A 29 2443 112 HOH HOH . 
M 4 HOH A 30 2444 115 HOH HOH . 
M 4 HOH A 31 2445 119 HOH HOH . 
M 4 HOH A 32 2446 127 HOH HOH . 
M 4 HOH A 33 2447 129 HOH HOH . 
M 4 HOH A 34 2448 135 HOH HOH . 
M 4 HOH A 35 2449 143 HOH HOH . 
M 4 HOH A 36 2450 157 HOH HOH . 
M 4 HOH A 37 2451 160 HOH HOH . 
M 4 HOH A 38 2452 163 HOH HOH . 
M 4 HOH A 39 2453 164 HOH HOH . 
M 4 HOH A 40 2454 167 HOH HOH . 
M 4 HOH A 41 2455 168 HOH HOH . 
M 4 HOH A 42 2456 172 HOH HOH . 
M 4 HOH A 43 2457 178 HOH HOH . 
M 4 HOH A 44 2458 182 HOH HOH . 
M 4 HOH A 45 2459 193 HOH HOH . 
M 4 HOH A 46 2460 194 HOH HOH . 
M 4 HOH A 47 2461 195 HOH HOH . 
M 4 HOH A 48 2462 197 HOH HOH . 
M 4 HOH A 49 2463 199 HOH HOH . 
M 4 HOH A 50 2464 201 HOH HOH . 
M 4 HOH A 51 2465 204 HOH HOH . 
M 4 HOH A 52 2466 205 HOH HOH . 
M 4 HOH A 53 2467 210 HOH HOH . 
M 4 HOH A 54 2468 211 HOH HOH . 
N 4 HOH B 1 3415 2 HOH HOH . 
N 4 HOH B 2 3416 5 HOH HOH . 
N 4 HOH B 3 3417 7 HOH HOH . 
N 4 HOH B 4 3418 8 HOH HOH . 
N 4 HOH B 5 3419 18 HOH HOH . 
N 4 HOH B 6 3420 19 HOH HOH . 
N 4 HOH B 7 3421 22 HOH HOH . 
N 4 HOH B 8 3422 28 HOH HOH . 
N 4 HOH B 9 3423 29 HOH HOH . 
N 4 HOH B 10 3424 31 HOH HOH . 
N 4 HOH B 11 3425 32 HOH HOH . 
N 4 HOH B 12 3426 33 HOH HOH . 
N 4 HOH B 13 3427 34 HOH HOH . 
N 4 HOH B 14 3428 35 HOH HOH . 
N 4 HOH B 15 3429 38 HOH HOH . 
N 4 HOH B 16 3430 39 HOH HOH . 
N 4 HOH B 17 3431 44 HOH HOH . 
N 4 HOH B 18 3432 52 HOH HOH . 
N 4 HOH B 19 3433 61 HOH HOH . 
N 4 HOH B 20 3434 63 HOH HOH . 
N 4 HOH B 21 3435 65 HOH HOH . 
N 4 HOH B 22 3436 67 HOH HOH . 
N 4 HOH B 23 3437 75 HOH HOH . 
N 4 HOH B 24 3438 77 HOH HOH . 
N 4 HOH B 25 3439 78 HOH HOH . 
N 4 HOH B 26 3440 79 HOH HOH . 
N 4 HOH B 27 3441 80 HOH HOH . 
N 4 HOH B 28 3442 83 HOH HOH . 
N 4 HOH B 29 3443 86 HOH HOH . 
N 4 HOH B 30 3444 96 HOH HOH . 
N 4 HOH B 31 3445 104 HOH HOH . 
N 4 HOH B 32 3446 109 HOH HOH . 
N 4 HOH B 33 3447 110 HOH HOH . 
N 4 HOH B 34 3448 113 HOH HOH . 
N 4 HOH B 35 3449 114 HOH HOH . 
N 4 HOH B 36 3450 118 HOH HOH . 
N 4 HOH B 37 3451 126 HOH HOH . 
N 4 HOH B 38 3452 134 HOH HOH . 
N 4 HOH B 39 3453 140 HOH HOH . 
N 4 HOH B 40 3454 141 HOH HOH . 
N 4 HOH B 41 3455 142 HOH HOH . 
N 4 HOH B 42 3456 145 HOH HOH . 
N 4 HOH B 43 3457 149 HOH HOH . 
N 4 HOH B 44 3458 154 HOH HOH . 
N 4 HOH B 45 3459 156 HOH HOH . 
N 4 HOH B 46 3460 159 HOH HOH . 
N 4 HOH B 47 3461 165 HOH HOH . 
N 4 HOH B 48 3462 170 HOH HOH . 
N 4 HOH B 49 3463 173 HOH HOH . 
N 4 HOH B 50 3464 180 HOH HOH . 
N 4 HOH B 51 3465 183 HOH HOH . 
N 4 HOH B 52 3466 184 HOH HOH . 
N 4 HOH B 53 3467 185 HOH HOH . 
N 4 HOH B 54 3468 188 HOH HOH . 
N 4 HOH B 55 3469 206 HOH HOH . 
N 4 HOH B 56 3470 207 HOH HOH . 
N 4 HOH B 57 3471 208 HOH HOH . 
N 4 HOH B 58 3472 209 HOH HOH . 
N 4 HOH B 59 3473 212 HOH HOH . 
N 4 HOH B 60 3474 217 HOH HOH . 
N 4 HOH B 61 3475 218 HOH HOH . 
O 4 HOH C 1 4415 4 HOH HOH . 
O 4 HOH C 2 4416 10 HOH HOH . 
O 4 HOH C 3 4417 11 HOH HOH . 
O 4 HOH C 4 4418 15 HOH HOH . 
O 4 HOH C 5 4419 24 HOH HOH . 
O 4 HOH C 6 4420 43 HOH HOH . 
O 4 HOH C 7 4421 45 HOH HOH . 
O 4 HOH C 8 4422 47 HOH HOH . 
O 4 HOH C 9 4423 54 HOH HOH . 
O 4 HOH C 10 4424 57 HOH HOH . 
O 4 HOH C 11 4425 69 HOH HOH . 
O 4 HOH C 12 4426 72 HOH HOH . 
O 4 HOH C 13 4427 74 HOH HOH . 
O 4 HOH C 14 4428 82 HOH HOH . 
O 4 HOH C 15 4429 84 HOH HOH . 
O 4 HOH C 16 4430 88 HOH HOH . 
O 4 HOH C 17 4431 90 HOH HOH . 
O 4 HOH C 18 4432 91 HOH HOH . 
O 4 HOH C 19 4433 92 HOH HOH . 
O 4 HOH C 20 4434 94 HOH HOH . 
O 4 HOH C 21 4435 95 HOH HOH . 
O 4 HOH C 22 4436 100 HOH HOH . 
O 4 HOH C 23 4437 101 HOH HOH . 
O 4 HOH C 24 4438 103 HOH HOH . 
O 4 HOH C 25 4439 105 HOH HOH . 
O 4 HOH C 26 4440 108 HOH HOH . 
O 4 HOH C 27 4441 111 HOH HOH . 
O 4 HOH C 28 4442 120 HOH HOH . 
O 4 HOH C 29 4443 121 HOH HOH . 
O 4 HOH C 30 4444 122 HOH HOH . 
O 4 HOH C 31 4445 123 HOH HOH . 
O 4 HOH C 32 4446 128 HOH HOH . 
O 4 HOH C 33 4447 130 HOH HOH . 
O 4 HOH C 34 4448 131 HOH HOH . 
O 4 HOH C 35 4449 133 HOH HOH . 
O 4 HOH C 36 4450 137 HOH HOH . 
O 4 HOH C 37 4451 138 HOH HOH . 
O 4 HOH C 38 4452 146 HOH HOH . 
O 4 HOH C 39 4453 147 HOH HOH . 
O 4 HOH C 40 4454 148 HOH HOH . 
O 4 HOH C 41 4455 151 HOH HOH . 
O 4 HOH C 42 4456 152 HOH HOH . 
O 4 HOH C 43 4457 155 HOH HOH . 
O 4 HOH C 44 4458 158 HOH HOH . 
O 4 HOH C 45 4459 161 HOH HOH . 
O 4 HOH C 46 4460 162 HOH HOH . 
O 4 HOH C 47 4461 171 HOH HOH . 
O 4 HOH C 48 4462 174 HOH HOH . 
O 4 HOH C 49 4463 175 HOH HOH . 
O 4 HOH C 50 4464 176 HOH HOH . 
O 4 HOH C 51 4465 179 HOH HOH . 
O 4 HOH C 52 4466 191 HOH HOH . 
O 4 HOH C 53 4467 192 HOH HOH . 
O 4 HOH C 54 4468 196 HOH HOH . 
O 4 HOH C 55 4469 198 HOH HOH . 
O 4 HOH C 56 4470 200 HOH HOH . 
O 4 HOH C 57 4471 202 HOH HOH . 
O 4 HOH C 58 4472 214 HOH HOH . 
O 4 HOH C 59 4473 215 HOH HOH . 
O 4 HOH C 60 4474 216 HOH HOH . 
P 4 HOH D 1 5415 3 HOH HOH . 
P 4 HOH D 2 5416 9 HOH HOH . 
P 4 HOH D 3 5417 17 HOH HOH . 
P 4 HOH D 4 5418 20 HOH HOH . 
P 4 HOH D 5 5419 21 HOH HOH . 
P 4 HOH D 6 5420 23 HOH HOH . 
P 4 HOH D 7 5421 25 HOH HOH . 
P 4 HOH D 8 5422 27 HOH HOH . 
P 4 HOH D 9 5423 40 HOH HOH . 
P 4 HOH D 10 5424 42 HOH HOH . 
P 4 HOH D 11 5425 49 HOH HOH . 
P 4 HOH D 12 5426 53 HOH HOH . 
P 4 HOH D 13 5427 58 HOH HOH . 
P 4 HOH D 14 5428 59 HOH HOH . 
P 4 HOH D 15 5429 62 HOH HOH . 
P 4 HOH D 16 5430 66 HOH HOH . 
P 4 HOH D 17 5431 71 HOH HOH . 
P 4 HOH D 18 5432 73 HOH HOH . 
P 4 HOH D 19 5433 85 HOH HOH . 
P 4 HOH D 20 5434 89 HOH HOH . 
P 4 HOH D 21 5435 93 HOH HOH . 
P 4 HOH D 22 5436 97 HOH HOH . 
P 4 HOH D 23 5437 107 HOH HOH . 
P 4 HOH D 24 5438 116 HOH HOH . 
P 4 HOH D 25 5439 117 HOH HOH . 
P 4 HOH D 26 5440 124 HOH HOH . 
P 4 HOH D 27 5441 125 HOH HOH . 
P 4 HOH D 28 5442 132 HOH HOH . 
P 4 HOH D 29 5443 136 HOH HOH . 
P 4 HOH D 30 5444 139 HOH HOH . 
P 4 HOH D 31 5445 144 HOH HOH . 
P 4 HOH D 32 5446 150 HOH HOH . 
P 4 HOH D 33 5447 153 HOH HOH . 
P 4 HOH D 34 5448 166 HOH HOH . 
P 4 HOH D 35 5449 169 HOH HOH . 
P 4 HOH D 36 5450 177 HOH HOH . 
P 4 HOH D 37 5451 181 HOH HOH . 
P 4 HOH D 38 5452 186 HOH HOH . 
P 4 HOH D 39 5453 187 HOH HOH . 
P 4 HOH D 40 5454 189 HOH HOH . 
P 4 HOH D 41 5455 190 HOH HOH . 
P 4 HOH D 42 5456 203 HOH HOH . 
P 4 HOH D 43 5457 213 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DCN . . . H 3 21.669 33.58 4.665 1 22.97 ? C1 DCN 3414 B 1 
HETATM 2 C C2 DCN . . . H 3 22.105 34.886 4.349 1 20.56 ? C2 DCN 3414 B 1 
HETATM 3 C C6 DCN . . . H 3 20.616 33.002 3.874 1 27.01 ? C6 DCN 3414 B 1 
HETATM 4 C C5 DCN . . . H 3 20.02 33.771 2.764 1 26.74 ? C5 DCN 3414 B 1 
HETATM 5 C C4 DCN . . . H 3 20.486 35.1 2.478 1 25.08 ? C4 DCN 3414 B 1 
HETATM 6 C C3 DCN . . . H 3 21.528 35.676 3.261 1 25.45 ? C3 DCN 3414 B 1 
HETATM 7 C C11 DCN . . . H 3 14.732 33.713 2.581 1 29.28 ? C11 DCN 3414 B 1 
HETATM 8 C C10 DCN . . . H 3 15.207 32.856 1.5 1 28.75 ? C10 DCN 3414 B 1 
HETATM 9 C C9 DCN . . . H 3 16.624 32.682 1.322 1 26.55 ? C9 DCN 3414 B 1 
HETATM 10 C C8 DCN . . . H 3 17.591 33.37 2.23 1 28.16 ? C8 DCN 3414 B 1 
HETATM 11 C C12 DCN . . . H 3 15.654 34.367 3.453 1 30.09 ? C12 DCN 3414 B 1 
HETATM 12 C C13 DCN . . . H 3 17.066 34.191 3.269 1 27.81 ? C13 DCN 3414 B 1 
HETATM 13 O O7 DCN . . . H 3 18.997 33.175 2.004 1 27.1 ? O7 DCN 3414 B 1 
HETATM 14 CL CL14 DCN . . . H 3 23.386 35.582 5.279 1 6.7 ? CL14 DCN 3414 B 1 
HETATM 15 CL CL15 DCN . . . H 3 13.065 33.966 2.84 1 26.79 ? CL15 DCN 3414 B 1 
HETATM 16 O O17 DCN . . . H 3 20.17 31.797 4.12 1 27.03 ? O17 DCN 3414 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#