data_2PDQ # _model_server_result.job_id 9vJV5si7NZdfJX7e7o5tyA _model_server_result.datetime_utc '2024-11-18 02:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":600}' # _entry.id 2PDQ # _exptl.entry_id 2PDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.765 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{3-[(5-CHLORO-1,3-BENZOTHIAZOL-2-YL)METHYL]-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL}ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 76.07 _cell.angle_beta 67.22 _cell.angle_gamma 76.89 _cell.entry_id 2PDQ _cell.length_a 40.32 _cell.length_b 47.13 _cell.length_c 47.404 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H10 Cl N3 O4 S' _chem_comp.formula_weight 351.765 _chem_comp.id 47D _chem_comp.mon_nstd_flag . _chem_comp.name '{3-[(5-CHLORO-1,3-BENZOTHIAZOL-2-YL)METHYL]-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL}ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C15 47D doub 1 n y C1 C10 47D sing 2 n y C1 N 47D sing 3 n n N C2 47D doub 4 n n C2 S 47D sing 5 n n C2 C3 47D sing 6 n n C3 N2 47D sing 7 n n C3 H31 47D sing 8 n n C3 H32 47D sing 9 n n N2 C9 47D sing 10 n n N2 C4 47D sing 11 n n C4 O1 47D doub 12 n n C4 N3 47D sing 13 n n N3 C7 47D sing 14 n n N3 C5 47D sing 15 n n C5 C6 47D sing 16 n n C5 H51 47D sing 17 n n C5 H52 47D sing 18 n n C6 O3 47D doub 19 n n C6 O2 47D sing 20 n n O2 HO2 47D sing 21 n n C7 C8 47D doub 22 n n C7 H7 47D sing 23 n n C8 C9 47D sing 24 n n C8 H8 47D sing 25 n n C9 O4 47D doub 26 n n S C10 47D sing 27 n n C10 C12 47D doub 28 n y C12 C13 47D sing 29 n y C12 H12 47D sing 30 n n C13 C14 47D doub 31 n y C13 H13 47D sing 32 n n C14 CL 47D sing 33 n n C14 C15 47D sing 34 n y C15 H15 47D sing 35 n n # _atom_sites.entry_id 2PDQ _atom_sites.fract_transf_matrix[1][1] 0.024802 _atom_sites.fract_transf_matrix[1][2] -0.005776 _atom_sites.fract_transf_matrix[1][3] -0.009572 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021786 _atom_sites.fract_transf_matrix[2][3] -0.003765 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 500 500 NAP NAP . C 3 47D A 1 600 600 47D LIG . D 4 HOH A 1 601 1001 HOH HOH . D 4 HOH A 2 602 1002 HOH HOH . D 4 HOH A 3 603 1003 HOH HOH . D 4 HOH A 4 604 1004 HOH HOH . D 4 HOH A 5 605 1005 HOH HOH . D 4 HOH A 6 606 1006 HOH HOH . D 4 HOH A 7 607 1007 HOH HOH . D 4 HOH A 8 608 1008 HOH HOH . D 4 HOH A 9 609 1009 HOH HOH . D 4 HOH A 10 610 1010 HOH HOH . D 4 HOH A 11 611 1011 HOH HOH . D 4 HOH A 12 612 1012 HOH HOH . D 4 HOH A 13 613 1013 HOH HOH . D 4 HOH A 14 614 1014 HOH HOH . D 4 HOH A 15 615 1015 HOH HOH . D 4 HOH A 16 616 1016 HOH HOH . D 4 HOH A 17 617 1017 HOH HOH . D 4 HOH A 18 618 1018 HOH HOH . D 4 HOH A 19 619 1019 HOH HOH . D 4 HOH A 20 620 1020 HOH HOH . D 4 HOH A 21 621 1021 HOH HOH . D 4 HOH A 22 622 1022 HOH HOH . D 4 HOH A 23 623 1023 HOH HOH . D 4 HOH A 24 624 1024 HOH HOH . D 4 HOH A 25 625 1025 HOH HOH . D 4 HOH A 26 626 1026 HOH HOH . D 4 HOH A 27 627 1027 HOH HOH . D 4 HOH A 28 628 1028 HOH HOH . D 4 HOH A 29 629 1029 HOH HOH . D 4 HOH A 30 630 1030 HOH HOH . D 4 HOH A 31 631 1031 HOH HOH . D 4 HOH A 32 632 1032 HOH HOH . D 4 HOH A 33 633 1033 HOH HOH . D 4 HOH A 34 634 1034 HOH HOH . D 4 HOH A 35 635 1035 HOH HOH . D 4 HOH A 36 636 1036 HOH HOH . D 4 HOH A 37 637 1037 HOH HOH . D 4 HOH A 38 638 1038 HOH HOH . D 4 HOH A 39 639 1039 HOH HOH . D 4 HOH A 40 640 1040 HOH HOH . D 4 HOH A 41 641 1041 HOH HOH . D 4 HOH A 42 642 1042 HOH HOH . D 4 HOH A 43 643 1043 HOH HOH . D 4 HOH A 44 644 1044 HOH HOH . D 4 HOH A 45 645 1045 HOH HOH . D 4 HOH A 46 646 1046 HOH HOH . D 4 HOH A 47 647 1047 HOH HOH . D 4 HOH A 48 648 1048 HOH HOH . D 4 HOH A 49 649 1049 HOH HOH . D 4 HOH A 50 650 1050 HOH HOH . D 4 HOH A 51 651 1051 HOH HOH . D 4 HOH A 52 652 1052 HOH HOH . D 4 HOH A 53 653 1053 HOH HOH . D 4 HOH A 54 654 1054 HOH HOH . D 4 HOH A 55 655 1055 HOH HOH . D 4 HOH A 56 656 1056 HOH HOH . D 4 HOH A 57 657 1057 HOH HOH . D 4 HOH A 58 658 1058 HOH HOH . D 4 HOH A 59 659 1059 HOH HOH . D 4 HOH A 60 660 1060 HOH HOH . D 4 HOH A 61 661 1061 HOH HOH . D 4 HOH A 62 662 1062 HOH HOH . D 4 HOH A 63 663 1063 HOH HOH . D 4 HOH A 64 664 1064 HOH HOH . D 4 HOH A 65 665 1065 HOH HOH . D 4 HOH A 66 666 1066 HOH HOH . D 4 HOH A 67 667 1067 HOH HOH . D 4 HOH A 68 668 1068 HOH HOH . D 4 HOH A 69 669 1069 HOH HOH . D 4 HOH A 70 670 1070 HOH HOH . D 4 HOH A 71 671 1071 HOH HOH . D 4 HOH A 72 672 1072 HOH HOH . D 4 HOH A 73 673 1073 HOH HOH . D 4 HOH A 74 674 1074 HOH HOH . D 4 HOH A 75 675 1075 HOH HOH . D 4 HOH A 76 676 1076 HOH HOH . D 4 HOH A 77 677 1077 HOH HOH . D 4 HOH A 78 678 1078 HOH HOH . D 4 HOH A 79 679 1079 HOH HOH . D 4 HOH A 80 680 1080 HOH HOH . D 4 HOH A 81 681 1081 HOH HOH . D 4 HOH A 82 682 1082 HOH HOH . D 4 HOH A 83 683 1083 HOH HOH . D 4 HOH A 84 684 1084 HOH HOH . D 4 HOH A 85 685 1085 HOH HOH . D 4 HOH A 86 686 1086 HOH HOH . D 4 HOH A 87 687 1087 HOH HOH . D 4 HOH A 88 688 1088 HOH HOH . D 4 HOH A 89 689 1089 HOH HOH . D 4 HOH A 90 690 1090 HOH HOH . D 4 HOH A 91 691 1091 HOH HOH . D 4 HOH A 92 692 1092 HOH HOH . D 4 HOH A 93 693 1093 HOH HOH . D 4 HOH A 94 694 1094 HOH HOH . D 4 HOH A 95 695 1095 HOH HOH . D 4 HOH A 96 696 1096 HOH HOH . D 4 HOH A 97 697 1097 HOH HOH . D 4 HOH A 98 698 1098 HOH HOH . D 4 HOH A 99 699 1099 HOH HOH . D 4 HOH A 100 700 1100 HOH HOH . D 4 HOH A 101 701 1101 HOH HOH . D 4 HOH A 102 702 1102 HOH HOH . D 4 HOH A 103 703 1103 HOH HOH . D 4 HOH A 104 704 1104 HOH HOH . D 4 HOH A 105 705 1105 HOH HOH . D 4 HOH A 106 706 1106 HOH HOH . D 4 HOH A 107 707 1107 HOH HOH . D 4 HOH A 108 708 1108 HOH HOH . D 4 HOH A 109 709 1109 HOH HOH . D 4 HOH A 110 710 1110 HOH HOH . D 4 HOH A 111 711 1111 HOH HOH . D 4 HOH A 112 712 1113 HOH HOH . D 4 HOH A 113 713 1114 HOH HOH . D 4 HOH A 114 714 1115 HOH HOH . D 4 HOH A 115 715 1116 HOH HOH . D 4 HOH A 116 716 1117 HOH HOH . D 4 HOH A 117 717 1118 HOH HOH . D 4 HOH A 118 718 1119 HOH HOH . D 4 HOH A 119 719 1121 HOH HOH . D 4 HOH A 120 720 1122 HOH HOH . D 4 HOH A 121 721 1123 HOH HOH . D 4 HOH A 122 722 1124 HOH HOH . D 4 HOH A 123 723 1125 HOH HOH . D 4 HOH A 124 724 1126 HOH HOH . D 4 HOH A 125 725 1127 HOH HOH . D 4 HOH A 126 726 1129 HOH HOH . D 4 HOH A 127 727 1130 HOH HOH . D 4 HOH A 128 728 1131 HOH HOH . D 4 HOH A 129 729 1132 HOH HOH . D 4 HOH A 130 730 1134 HOH HOH . D 4 HOH A 131 731 1135 HOH HOH . D 4 HOH A 132 732 1139 HOH HOH . D 4 HOH A 133 733 1140 HOH HOH . D 4 HOH A 134 734 1142 HOH HOH . D 4 HOH A 135 735 1143 HOH HOH . D 4 HOH A 136 736 1145 HOH HOH . D 4 HOH A 137 737 1146 HOH HOH . D 4 HOH A 138 738 1147 HOH HOH . D 4 HOH A 139 739 1150 HOH HOH . D 4 HOH A 140 740 1151 HOH HOH . D 4 HOH A 141 741 1152 HOH HOH . D 4 HOH A 142 742 1153 HOH HOH . D 4 HOH A 143 743 1154 HOH HOH . D 4 HOH A 144 744 1155 HOH HOH . D 4 HOH A 145 745 1156 HOH HOH . D 4 HOH A 146 746 1158 HOH HOH . D 4 HOH A 147 747 1159 HOH HOH . D 4 HOH A 148 748 1160 HOH HOH . D 4 HOH A 149 749 1161 HOH HOH . D 4 HOH A 150 750 1167 HOH HOH . D 4 HOH A 151 751 1170 HOH HOH . D 4 HOH A 152 752 1172 HOH HOH . D 4 HOH A 153 753 1173 HOH HOH . D 4 HOH A 154 754 1174 HOH HOH . D 4 HOH A 155 755 1176 HOH HOH . D 4 HOH A 156 756 1177 HOH HOH . D 4 HOH A 157 757 1178 HOH HOH . D 4 HOH A 158 758 1179 HOH HOH . D 4 HOH A 159 759 1180 HOH HOH . D 4 HOH A 160 760 1182 HOH HOH . D 4 HOH A 161 761 1188 HOH HOH . D 4 HOH A 162 762 1189 HOH HOH . D 4 HOH A 163 763 1191 HOH HOH . D 4 HOH A 164 764 1192 HOH HOH . D 4 HOH A 165 765 1196 HOH HOH . D 4 HOH A 166 766 1199 HOH HOH . D 4 HOH A 167 767 1204 HOH HOH . D 4 HOH A 168 768 1205 HOH HOH . D 4 HOH A 169 769 1206 HOH HOH . D 4 HOH A 170 770 1208 HOH HOH . D 4 HOH A 171 771 1209 HOH HOH . D 4 HOH A 172 772 1210 HOH HOH . D 4 HOH A 173 773 1212 HOH HOH . D 4 HOH A 174 774 1213 HOH HOH . D 4 HOH A 175 775 1214 HOH HOH . D 4 HOH A 176 776 1215 HOH HOH . D 4 HOH A 177 777 1216 HOH HOH . D 4 HOH A 178 778 1217 HOH HOH . D 4 HOH A 179 779 1218 HOH HOH . D 4 HOH A 180 780 1219 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 47D . . . C 3 15.549 7.838 -13.037 1 30.48 ? C1 47D 600 A 1 HETATM 2 N N 47D . . . C 3 16.529 8.377 -13.787 1 25.88 ? N 47D 600 A 1 HETATM 3 C C2 47D . . . C 3 17.471 8.945 -13.137 1 27.14 ? C2 47D 600 A 1 HETATM 4 C C3 47D . . . C 3 18.677 9.574 -13.766 1 20.86 ? C3 47D 600 A 1 HETATM 5 N N2 47D . . . C 3 19.421 10.396 -12.826 1 25.89 ? N2 47D 600 A 1 HETATM 6 C C4 47D . . . C 3 18.987 11.668 -12.602 1 23.46 ? C4 47D 600 A 1 HETATM 7 O O1 47D . . . C 3 18.18 12.161 -13.379 1 23.99 ? O1 47D 600 A 1 HETATM 8 N N3 47D . . . C 3 19.426 12.349 -11.574 1 21.39 ? N3 47D 600 A 1 HETATM 9 C C5 47D . . . C 3 19.06 13.751 -11.401 1 24.44 ? C5 47D 600 A 1 HETATM 10 C C6 47D . . . C 3 17.772 13.874 -10.631 1 19.77 ? C6 47D 600 A 1 HETATM 11 O O2 47D . . . C 3 17.249 15.082 -10.539 1 17.67 ? O2 47D 600 A 1 HETATM 12 O O3 47D . . . C 3 17.243 12.895 -10.116 1 22.27 ? O3 47D 600 A 1 HETATM 13 C C7 47D . . . C 3 20.289 11.848 -10.725 1 23.91 ? C7 47D 600 A 1 HETATM 14 C C8 47D . . . C 3 20.768 10.602 -10.856 1 21.01 ? C8 47D 600 A 1 HETATM 15 C C9 47D . . . C 3 20.331 9.812 -11.999 1 29.12 ? C9 47D 600 A 1 HETATM 16 O O4 47D . . . C 3 20.727 8.662 -12.155 1 23.99 ? O4 47D 600 A 1 HETATM 17 S S 47D . . . C 3 17.278 8.903 -11.348 1 24.51 ? S 47D 600 A 1 HETATM 18 C C10 47D . . . C 3 15.785 8.025 -11.679 1 21.08 ? C10 47D 600 A 1 HETATM 19 C C12 47D . . . C 3 14.937 7.57 -10.676 1 23.02 ? C12 47D 600 A 1 HETATM 20 C C13 47D . . . C 3 13.787 6.89 -11.075 1 21.51 ? C13 47D 600 A 1 HETATM 21 C C14 47D . . . C 3 13.567 6.709 -12.455 1 22.1 ? C14 47D 600 A 1 HETATM 22 CL CL 47D . . . C 3 12.127 5.861 -12.955 1 27.18 ? CL 47D 600 A 1 HETATM 23 C C15 47D . . . C 3 14.493 7.048 -13.449 1 23.73 ? C15 47D 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #