data_2PE1 # _model_server_result.job_id M48FcLUu6VRV_Q3EUtoEog _model_server_result.datetime_utc '2025-01-25 07:49:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pe1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 2PE1 # _exptl.entry_id 2PE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-OXO-3-[(1R)-1-(1H-PYRROL-2-YL)ETHYL]-2H-INDOL-5-YL}UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PE1 _cell.length_a 125.234 _cell.length_b 125.234 _cell.length_c 47.696 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 168 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 169 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H14 N4 O2' _chem_comp.formula_weight 282.297 _chem_comp.id 517 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-OXO-3-[(1R)-1-(1H-PYRROL-2-YL)ETHYL]-2H-INDOL-5-YL}UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N22 C21 517 sing 1 n n N22 C24 517 sing 2 n n N22 HN22 517 sing 3 n n C24 C25 517 doub 4 n n C24 H24 517 sing 5 n n C25 C26 517 sing 6 n n C25 H25 517 sing 7 n n C26 C21 517 doub 8 n n C26 H26 517 sing 9 n n C21 C19 517 sing 10 n n C19 C5 517 sing 11 n n C19 C20 517 sing 12 n n C19 H19 517 sing 13 n n C20 H201 517 sing 14 n n C20 H202 517 sing 15 n n C20 H203 517 sing 16 n n C5 C7 517 doub 17 n n C5 C3 517 sing 18 n n C7 C6 517 sing 19 n y C7 C8 517 sing 20 n y C8 C9 517 doub 21 n y C8 H8 517 sing 22 n n C3 N1 517 sing 23 n n C3 O4 517 doub 24 n n N1 C6 517 doub 25 n n C6 C11 517 sing 26 n y C11 C10 517 doub 27 n y C11 H11 517 sing 28 n n C10 C9 517 sing 29 n y C10 H10 517 sing 30 n n C9 N12 517 sing 31 n n N12 C14 517 sing 32 n n N12 HN12 517 sing 33 n n C14 O15 517 doub 34 n n C14 N16 517 sing 35 n n N16 H161 517 sing 36 n n N16 H162 517 sing 37 n n # _atom_sites.entry_id 2PE1 _atom_sites.fract_transf_matrix[1][1] 0.007985 _atom_sites.fract_transf_matrix[1][2] 0.00461 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 600 600 SO4 SO4 . C 2 SO4 A 1 601 601 SO4 SO4 . D 3 517 A 1 501 501 517 517 . E 4 GOL A 1 611 611 GOL GOL . F 4 GOL A 1 612 612 GOL GOL . G 4 GOL A 1 616 616 GOL GOL . H 4 GOL A 1 617 617 GOL GOL . I 5 HOH A 1 701 701 HOH HOH . I 5 HOH A 2 702 702 HOH HOH . I 5 HOH A 3 703 703 HOH HOH . I 5 HOH A 4 704 704 HOH HOH . I 5 HOH A 5 705 705 HOH HOH . I 5 HOH A 6 706 706 HOH HOH . I 5 HOH A 7 707 707 HOH HOH . I 5 HOH A 8 708 708 HOH HOH . I 5 HOH A 9 709 709 HOH HOH . I 5 HOH A 10 710 710 HOH HOH . I 5 HOH A 11 711 711 HOH HOH . I 5 HOH A 12 712 712 HOH HOH . I 5 HOH A 13 715 715 HOH HOH . I 5 HOH A 14 716 716 HOH HOH . I 5 HOH A 15 717 717 HOH HOH . I 5 HOH A 16 719 719 HOH HOH . I 5 HOH A 17 723 723 HOH HOH . I 5 HOH A 18 725 725 HOH HOH . I 5 HOH A 19 727 727 HOH HOH . I 5 HOH A 20 728 728 HOH HOH . I 5 HOH A 21 732 732 HOH HOH . I 5 HOH A 22 733 733 HOH HOH . I 5 HOH A 23 734 734 HOH HOH . I 5 HOH A 24 737 737 HOH HOH . I 5 HOH A 25 739 739 HOH HOH . I 5 HOH A 26 740 740 HOH HOH . I 5 HOH A 27 741 741 HOH HOH . I 5 HOH A 28 744 744 HOH HOH . I 5 HOH A 29 745 745 HOH HOH . I 5 HOH A 30 746 746 HOH HOH . I 5 HOH A 31 750 750 HOH HOH . I 5 HOH A 32 757 757 HOH HOH . I 5 HOH A 33 762 762 HOH HOH . I 5 HOH A 34 766 766 HOH HOH . I 5 HOH A 35 767 767 HOH HOH . I 5 HOH A 36 781 781 HOH HOH . I 5 HOH A 37 782 782 HOH HOH . I 5 HOH A 38 792 792 HOH HOH . I 5 HOH A 39 794 794 HOH HOH . I 5 HOH A 40 801 801 HOH HOH . I 5 HOH A 41 802 802 HOH HOH . I 5 HOH A 42 804 804 HOH HOH . I 5 HOH A 43 807 807 HOH HOH . I 5 HOH A 44 808 808 HOH HOH . I 5 HOH A 45 809 809 HOH HOH . I 5 HOH A 46 810 810 HOH HOH . I 5 HOH A 47 812 812 HOH HOH . I 5 HOH A 48 813 813 HOH HOH . I 5 HOH A 49 814 814 HOH HOH . I 5 HOH A 50 815 815 HOH HOH . I 5 HOH A 51 816 816 HOH HOH . I 5 HOH A 52 817 817 HOH HOH . I 5 HOH A 53 829 829 HOH HOH . I 5 HOH A 54 832 832 HOH HOH . I 5 HOH A 55 833 833 HOH HOH . I 5 HOH A 56 835 835 HOH HOH . I 5 HOH A 57 837 837 HOH HOH . I 5 HOH A 58 840 840 HOH HOH . I 5 HOH A 59 842 842 HOH HOH . I 5 HOH A 60 846 846 HOH HOH . I 5 HOH A 61 849 849 HOH HOH . I 5 HOH A 62 850 850 HOH HOH . I 5 HOH A 63 852 852 HOH HOH . I 5 HOH A 64 853 853 HOH HOH . I 5 HOH A 65 854 854 HOH HOH . I 5 HOH A 66 855 855 HOH HOH . I 5 HOH A 67 857 857 HOH HOH . I 5 HOH A 68 858 858 HOH HOH . I 5 HOH A 69 859 859 HOH HOH . I 5 HOH A 70 860 860 HOH HOH . I 5 HOH A 71 862 862 HOH HOH . I 5 HOH A 72 863 863 HOH HOH . I 5 HOH A 73 864 864 HOH HOH . I 5 HOH A 74 865 865 HOH HOH . I 5 HOH A 75 867 867 HOH HOH . I 5 HOH A 76 868 868 HOH HOH . I 5 HOH A 77 869 869 HOH HOH . I 5 HOH A 78 870 870 HOH HOH . I 5 HOH A 79 871 871 HOH HOH . I 5 HOH A 80 872 872 HOH HOH . I 5 HOH A 81 873 873 HOH HOH . I 5 HOH A 82 874 874 HOH HOH . I 5 HOH A 83 875 875 HOH HOH . I 5 HOH A 84 876 876 HOH HOH . I 5 HOH A 85 879 879 HOH HOH . I 5 HOH A 86 880 880 HOH HOH . I 5 HOH A 87 881 881 HOH HOH . I 5 HOH A 88 882 882 HOH HOH . I 5 HOH A 89 883 883 HOH HOH . I 5 HOH A 90 884 884 HOH HOH . I 5 HOH A 91 885 885 HOH HOH . I 5 HOH A 92 886 886 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N22 517 . . . D 3 -6.266 39.961 45.557 1 16.66 ? N22 517 501 A 1 HETATM 2 C C24 517 . . . D 3 -5.621 38.89 46.016 1 11.88 ? C24 517 501 A 1 HETATM 3 C C25 517 . . . D 3 -4.396 39.265 46.356 1 15.51 ? C25 517 501 A 1 HETATM 4 C C26 517 . . . D 3 -4.281 40.566 46.109 1 13.96 ? C26 517 501 A 1 HETATM 5 C C21 517 . . . D 3 -5.444 41.011 45.613 1 15.76 ? C21 517 501 A 1 HETATM 6 C C19 517 . . . D 3 -5.728 42.358 45.25 1 12.02 ? C19 517 501 A 1 HETATM 7 C C20 517 . . . D 3 -4.577 43.372 45.419 1 15.56 ? C20 517 501 A 1 HETATM 8 C C5 517 . . . D 3 -7.025 42.804 44.764 1 11.75 ? C5 517 501 A 1 HETATM 9 C C7 517 . . . D 3 -7.35 44.088 44.277 1 11.1 ? C7 517 501 A 1 HETATM 10 C C8 517 . . . D 3 -6.632 45.293 44.086 1 11.99 ? C8 517 501 A 1 HETATM 11 C C3 517 . . . D 3 -8.21 42.057 44.668 1 10.72 ? C3 517 501 A 1 HETATM 12 O O4 517 . . . D 3 -8.381 40.894 45.033 1 10.43 ? O4 517 501 A 1 HETATM 13 N N1 517 . . . D 3 -9.186 42.807 44.162 1 11.07 ? N1 517 501 A 1 HETATM 14 C C6 517 . . . D 3 -8.715 44.035 43.911 1 10.94 ? C6 517 501 A 1 HETATM 15 C C11 517 . . . D 3 -9.34 45.167 43.364 1 11.07 ? C11 517 501 A 1 HETATM 16 C C10 517 . . . D 3 -8.618 46.354 43.174 1 11.93 ? C10 517 501 A 1 HETATM 17 C C9 517 . . . D 3 -7.254 46.428 43.532 1 9.55 ? C9 517 501 A 1 HETATM 18 N N12 517 . . . D 3 -6.518 47.559 43.385 1 15.71 ? N12 517 501 A 1 HETATM 19 C C14 517 . . . D 3 -6.931 48.737 42.85 1 13.37 ? C14 517 501 A 1 HETATM 20 O O15 517 . . . D 3 -8.048 48.911 42.349 1 14.92 ? O15 517 501 A 1 HETATM 21 N N16 517 . . . D 3 -6.027 49.708 42.83 1 16.64 ? N16 517 501 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #