data_2PE2 # _model_server_result.job_id vj2nTa6-RT02wKN9zt21aQ _model_server_result.datetime_utc '2024-10-18 16:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pe2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2PE2 # _exptl.entry_id 2PE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.576 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[5-({5-[(AMINOCARBONYL)AMINO]-2-OXO-2H-INDOL-3-YL}METHYL)-1H-PYRROL-3-YL]-N-(2-PIPERIDIN-1-YLETHYL)BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PE2 _cell.length_a 123.223 _cell.length_b 123.223 _cell.length_c 47.386 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+5/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 78.976667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id SEP _struct_conn.ptnr1_label_seq_id 168 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SEP _struct_conn.ptnr1_auth_seq_id 241 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PHE _struct_conn.ptnr2_label_seq_id 169 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PHE _struct_conn.ptnr2_auth_seq_id 242 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.33 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H30 N6 O3' _chem_comp.formula_weight 498.576 _chem_comp.id 464 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[5-({5-[(AMINOCARBONYL)AMINO]-2-OXO-2H-INDOL-3-YL}METHYL)-1H-PYRROL-3-YL]-N-(2-PIPERIDIN-1-YLETHYL)BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PE2 _atom_sites.fract_transf_matrix[1][1] 0.008115 _atom_sites.fract_transf_matrix[1][2] 0.004685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 599 599 SO4 SO4 . C 2 SO4 A 1 600 600 SO4 SO4 . D 2 SO4 A 1 601 601 SO4 SO4 . E 3 464 A 1 501 501 464 464 . F 4 GOL A 1 602 602 GOL GOL . G 4 GOL A 1 603 603 GOL GOL . H 4 GOL A 1 604 604 GOL GOL . I 4 GOL A 1 605 605 GOL GOL . J 4 GOL A 1 606 606 GOL GOL . K 4 GOL A 1 607 607 GOL GOL . L 4 GOL A 1 608 608 GOL GOL . M 4 GOL A 1 609 609 GOL GOL . N 5 HOH A 1 702 702 HOH HOH . N 5 HOH A 2 708 708 HOH HOH . N 5 HOH A 3 709 709 HOH HOH . N 5 HOH A 4 710 710 HOH HOH . N 5 HOH A 5 711 711 HOH HOH . N 5 HOH A 6 714 714 HOH HOH . N 5 HOH A 7 717 717 HOH HOH . N 5 HOH A 8 719 719 HOH HOH . N 5 HOH A 9 720 720 HOH HOH . N 5 HOH A 10 721 721 HOH HOH . N 5 HOH A 11 722 722 HOH HOH . N 5 HOH A 12 723 723 HOH HOH . N 5 HOH A 13 725 725 HOH HOH . N 5 HOH A 14 727 727 HOH HOH . N 5 HOH A 15 731 731 HOH HOH . N 5 HOH A 16 734 734 HOH HOH . N 5 HOH A 17 735 735 HOH HOH . N 5 HOH A 18 736 736 HOH HOH . N 5 HOH A 19 739 739 HOH HOH . N 5 HOH A 20 742 742 HOH HOH . N 5 HOH A 21 743 743 HOH HOH . N 5 HOH A 22 744 744 HOH HOH . N 5 HOH A 23 745 745 HOH HOH . N 5 HOH A 24 752 752 HOH HOH . N 5 HOH A 25 754 754 HOH HOH . N 5 HOH A 26 756 756 HOH HOH . N 5 HOH A 27 762 762 HOH HOH . N 5 HOH A 28 763 763 HOH HOH . N 5 HOH A 29 764 764 HOH HOH . N 5 HOH A 30 771 771 HOH HOH . N 5 HOH A 31 772 772 HOH HOH . N 5 HOH A 32 773 773 HOH HOH . N 5 HOH A 33 775 775 HOH HOH . N 5 HOH A 34 776 776 HOH HOH . N 5 HOH A 35 778 778 HOH HOH . N 5 HOH A 36 780 780 HOH HOH . N 5 HOH A 37 781 781 HOH HOH . N 5 HOH A 38 782 782 HOH HOH . N 5 HOH A 39 783 783 HOH HOH . N 5 HOH A 40 785 785 HOH HOH . N 5 HOH A 41 788 788 HOH HOH . N 5 HOH A 42 789 789 HOH HOH . N 5 HOH A 43 791 791 HOH HOH . N 5 HOH A 44 792 792 HOH HOH . N 5 HOH A 45 793 793 HOH HOH . N 5 HOH A 46 795 795 HOH HOH . N 5 HOH A 47 796 796 HOH HOH . N 5 HOH A 48 803 803 HOH HOH . N 5 HOH A 49 805 805 HOH HOH . N 5 HOH A 50 807 807 HOH HOH . N 5 HOH A 51 808 808 HOH HOH . N 5 HOH A 52 809 809 HOH HOH . N 5 HOH A 53 812 812 HOH HOH . N 5 HOH A 54 813 813 HOH HOH . N 5 HOH A 55 815 815 HOH HOH . N 5 HOH A 56 820 820 HOH HOH . N 5 HOH A 57 821 821 HOH HOH . N 5 HOH A 58 827 827 HOH HOH . N 5 HOH A 59 830 830 HOH HOH . N 5 HOH A 60 831 831 HOH HOH . N 5 HOH A 61 832 832 HOH HOH . N 5 HOH A 62 833 833 HOH HOH . N 5 HOH A 63 834 834 HOH HOH . N 5 HOH A 64 837 837 HOH HOH . N 5 HOH A 65 838 838 HOH HOH . N 5 HOH A 66 840 840 HOH HOH . N 5 HOH A 67 841 841 HOH HOH . N 5 HOH A 68 842 842 HOH HOH . N 5 HOH A 69 846 846 HOH HOH . N 5 HOH A 70 848 848 HOH HOH . N 5 HOH A 71 849 849 HOH HOH . N 5 HOH A 72 850 850 HOH HOH . N 5 HOH A 73 851 851 HOH HOH . N 5 HOH A 74 852 852 HOH HOH . N 5 HOH A 75 853 853 HOH HOH . N 5 HOH A 76 854 854 HOH HOH . N 5 HOH A 77 856 856 HOH HOH . N 5 HOH A 78 858 858 HOH HOH . N 5 HOH A 79 859 859 HOH HOH . N 5 HOH A 80 861 861 HOH HOH . N 5 HOH A 81 862 862 HOH HOH . N 5 HOH A 82 863 863 HOH HOH . N 5 HOH A 83 864 864 HOH HOH . N 5 HOH A 84 865 865 HOH HOH . N 5 HOH A 85 867 867 HOH HOH . N 5 HOH A 86 869 869 HOH HOH . N 5 HOH A 87 870 870 HOH HOH . N 5 HOH A 88 871 871 HOH HOH . N 5 HOH A 89 872 872 HOH HOH . N 5 HOH A 90 874 874 HOH HOH . N 5 HOH A 91 877 877 HOH HOH . N 5 HOH A 92 879 879 HOH HOH . N 5 HOH A 93 881 881 HOH HOH . N 5 HOH A 94 883 883 HOH HOH . N 5 HOH A 95 885 885 HOH HOH . N 5 HOH A 96 887 887 HOH HOH . N 5 HOH A 97 889 889 HOH HOH . N 5 HOH A 98 890 890 HOH HOH . N 5 HOH A 99 892 892 HOH HOH . N 5 HOH A 100 895 895 HOH HOH . N 5 HOH A 101 896 896 HOH HOH . N 5 HOH A 102 897 897 HOH HOH . N 5 HOH A 103 898 898 HOH HOH . N 5 HOH A 104 899 899 HOH HOH . N 5 HOH A 105 902 902 HOH HOH . N 5 HOH A 106 903 903 HOH HOH . N 5 HOH A 107 904 904 HOH HOH . N 5 HOH A 108 905 905 HOH HOH . N 5 HOH A 109 906 906 HOH HOH . N 5 HOH A 110 907 907 HOH HOH . N 5 HOH A 111 908 908 HOH HOH . N 5 HOH A 112 909 909 HOH HOH . N 5 HOH A 113 910 910 HOH HOH . N 5 HOH A 114 911 911 HOH HOH . N 5 HOH A 115 913 913 HOH HOH . N 5 HOH A 116 915 915 HOH HOH . N 5 HOH A 117 916 916 HOH HOH . N 5 HOH A 118 919 919 HOH HOH . N 5 HOH A 119 920 920 HOH HOH . N 5 HOH A 120 921 921 HOH HOH . N 5 HOH A 121 922 922 HOH HOH . N 5 HOH A 122 925 925 HOH HOH . N 5 HOH A 123 926 926 HOH HOH . N 5 HOH A 124 928 928 HOH HOH . N 5 HOH A 125 929 929 HOH HOH . N 5 HOH A 126 931 931 HOH HOH . N 5 HOH A 127 933 933 HOH HOH . N 5 HOH A 128 934 934 HOH HOH . N 5 HOH A 129 936 936 HOH HOH . N 5 HOH A 130 937 937 HOH HOH . N 5 HOH A 131 938 938 HOH HOH . N 5 HOH A 132 944 944 HOH HOH . N 5 HOH A 133 947 947 HOH HOH . N 5 HOH A 134 952 952 HOH HOH . N 5 HOH A 135 956 956 HOH HOH . N 5 HOH A 136 957 957 HOH HOH . N 5 HOH A 137 962 962 HOH HOH . N 5 HOH A 138 963 963 HOH HOH . N 5 HOH A 139 964 964 HOH HOH . N 5 HOH A 140 965 965 HOH HOH . N 5 HOH A 141 966 966 HOH HOH . N 5 HOH A 142 967 967 HOH HOH . N 5 HOH A 143 968 968 HOH HOH . N 5 HOH A 144 969 969 HOH HOH . N 5 HOH A 145 971 971 HOH HOH . N 5 HOH A 146 972 972 HOH HOH . N 5 HOH A 147 973 973 HOH HOH . N 5 HOH A 148 976 976 HOH HOH . N 5 HOH A 149 977 977 HOH HOH . N 5 HOH A 150 978 978 HOH HOH . N 5 HOH A 151 979 979 HOH HOH . N 5 HOH A 152 980 980 HOH HOH . N 5 HOH A 153 981 981 HOH HOH . N 5 HOH A 154 982 982 HOH HOH . N 5 HOH A 155 983 983 HOH HOH . N 5 HOH A 156 984 984 HOH HOH . N 5 HOH A 157 985 985 HOH HOH . N 5 HOH A 158 986 986 HOH HOH . N 5 HOH A 159 987 987 HOH HOH . N 5 HOH A 160 988 988 HOH HOH . N 5 HOH A 161 989 989 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C38 464 . . . E 3 1.144 31.217 44.312 1 65 ? C38 464 501 A 1 HETATM 2 C C39 464 . . . E 3 2.628 31.205 43.908 1 65.71 ? C39 464 501 A 1 HETATM 3 C C40 464 . . . E 3 3.245 32.593 44.117 1 65.36 ? C40 464 501 A 1 HETATM 4 C C41 464 . . . E 3 2.445 33.655 43.351 1 64.31 ? C41 464 501 A 1 HETATM 5 C C42 464 . . . E 3 0.962 33.615 43.769 1 63.17 ? C42 464 501 A 1 HETATM 6 N N37 464 . . . E 3 0.419 32.254 43.525 1 62.62 ? N37 464 501 A 1 HETATM 7 C C36 464 . . . E 3 -1.052 32.18 43.781 1 58.86 ? C36 464 501 A 1 HETATM 8 C C35 464 . . . E 3 -1.439 32.345 45.269 1 53.7 ? C35 464 501 A 1 HETATM 9 N N33 464 . . . E 3 -1.592 33.769 45.629 1 49.8 ? N33 464 501 A 1 HETATM 10 C C31 464 . . . E 3 -0.978 34.316 46.683 1 45.29 ? C31 464 501 A 1 HETATM 11 O O32 464 . . . E 3 -0.219 33.693 47.43 1 48.28 ? O32 464 501 A 1 HETATM 12 C C29 464 . . . E 3 -1.26 35.819 46.921 1 39.23 ? C29 464 501 A 1 HETATM 13 C C30 464 . . . E 3 -2.391 36.454 46.35 1 34.58 ? C30 464 501 A 1 HETATM 14 C C28 464 . . . E 3 -0.383 36.558 47.732 1 36.88 ? C28 464 501 A 1 HETATM 15 C C27 464 . . . E 3 -0.618 37.919 47.973 1 37.9 ? C27 464 501 A 1 HETATM 16 C C26 464 . . . E 3 -1.736 38.553 47.406 1 35.46 ? C26 464 501 A 1 HETATM 17 C C25 464 . . . E 3 -2.634 37.832 46.593 1 31.2 ? C25 464 501 A 1 HETATM 18 C C23 464 . . . E 3 -3.79 38.478 46.091 1 28.25 ? C23 464 501 A 1 HETATM 19 C C24 464 . . . E 3 -3.902 39.78 45.779 1 24.11 ? C24 464 501 A 1 HETATM 20 C C22 464 . . . E 3 -4.978 37.912 45.855 1 25.89 ? C22 464 501 A 1 HETATM 21 N N20 464 . . . E 3 -5.811 38.855 45.415 1 21.91 ? N20 464 501 A 1 HETATM 22 C C19 464 . . . E 3 -5.151 40.014 45.369 1 22.3 ? C19 464 501 A 1 HETATM 23 C C18 464 . . . E 3 -5.522 41.32 44.986 1 18.99 ? C18 464 501 A 1 HETATM 24 C C4 464 . . . E 3 -6.817 41.708 44.545 1 18.05 ? C4 464 501 A 1 HETATM 25 C C6 464 . . . E 3 -7.158 42.991 44.141 1 18.78 ? C6 464 501 A 1 HETATM 26 C C7 464 . . . E 3 -6.421 44.184 43.978 1 18.25 ? C7 464 501 A 1 HETATM 27 C C2 464 . . . E 3 -7.963 40.925 44.406 1 18.96 ? C2 464 501 A 1 HETATM 28 O O3 464 . . . E 3 -8.064 39.722 44.665 1 17.63 ? O3 464 501 A 1 HETATM 29 N N1 464 . . . E 3 -8.968 41.681 43.945 1 16.13 ? N1 464 501 A 1 HETATM 30 C C5 464 . . . E 3 -8.521 42.941 43.769 1 16.57 ? C5 464 501 A 1 HETATM 31 C C10 464 . . . E 3 -9.14 44.089 43.247 1 15.46 ? C10 464 501 A 1 HETATM 32 C C9 464 . . . E 3 -8.399 45.278 43.075 1 16.7 ? C9 464 501 A 1 HETATM 33 C C8 464 . . . E 3 -7.029 45.332 43.431 1 18.22 ? C8 464 501 A 1 HETATM 34 N N11 464 . . . E 3 -6.253 46.436 43.234 1 19.53 ? N11 464 501 A 1 HETATM 35 C C13 464 . . . E 3 -6.634 47.623 42.692 1 23.63 ? C13 464 501 A 1 HETATM 36 O O17 464 . . . E 3 -7.761 47.837 42.228 1 23.06 ? O17 464 501 A 1 HETATM 37 N N14 464 . . . E 3 -5.687 48.553 42.62 1 21.33 ? N14 464 501 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #