data_2PEB # _model_server_result.job_id diO9RMHlWZkB9TydFWZEIA _model_server_result.datetime_utc '2025-06-20 07:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2peb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 2PEB # _exptl.entry_id 2PEB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.81 _cell.angle_gamma 90 _cell.entry_id 2PEB _cell.length_a 44.562 _cell.length_b 57.042 _cell.length_c 46.676 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PEB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 55 A GLY 54 1_555 A N MSE 56 A MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 56 A MSE 55 1_555 A N TYR 57 A TYR 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 A C LEU 73 A LEU 72 1_555 A N MSE 74 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 74 A MSE 73 1_555 A N LEU 75 A LEU 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale5 B C GLY 55 B GLY 54 1_555 B N MSE 56 B MSE 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C MSE 56 B MSE 55 1_555 B N TYR 57 B TYR 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale7 B C LEU 73 B LEU 72 1_555 B N MSE 74 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C MSE 74 B MSE 73 1_555 B N LEU 75 B LEU 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? metalc ? metalc1 A ND1 HIS 13 A HIS 12 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 A NE2 HIS 15 A HIS 14 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc3 A NE2 HIS 85 A HIS 84 1_555 C ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 C ZN ZN . A ZN 200 1_555 D O1 UNL . A UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.72 ? metalc ? metalc5 C ZN ZN . A ZN 200 1_555 D O7 UNL . A UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 B ND1 HIS 13 B HIS 12 1_555 G ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc7 B NE2 HIS 15 B HIS 14 1_555 G ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc8 B NE2 HIS 85 B HIS 84 1_555 G ZN ZN . B ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 G ZN ZN . B ZN 200 1_555 H O6 UNL . B UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.514 ? metalc ? metalc10 G ZN ZN . B ZN 200 1_555 H O5 UNL . B UNL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PEB _atom_sites.fract_transf_matrix[1][1] 0.02244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 200 200 ZN ZN . D 3 UNL A 1 201 1 UNL UNL . E 4 PG4 A 1 202 3 PG4 PG4 . F 5 EDO A 1 203 4 EDO EDO . G 2 ZN B 1 200 200 ZN ZN . H 3 UNL B 1 201 2 UNL UNL . I 5 EDO B 1 202 5 EDO EDO . J 5 EDO B 1 203 6 EDO EDO . K 5 EDO B 1 204 7 EDO EDO . L 5 EDO B 1 205 8 EDO EDO . M 6 HOH A 1 204 9 HOH HOH . M 6 HOH A 2 205 11 HOH HOH . M 6 HOH A 3 206 12 HOH HOH . M 6 HOH A 4 207 14 HOH HOH . M 6 HOH A 5 208 16 HOH HOH . M 6 HOH A 6 209 18 HOH HOH . M 6 HOH A 7 210 21 HOH HOH . M 6 HOH A 8 211 23 HOH HOH . M 6 HOH A 9 212 24 HOH HOH . M 6 HOH A 10 213 28 HOH HOH . M 6 HOH A 11 214 30 HOH HOH . M 6 HOH A 12 215 33 HOH HOH . M 6 HOH A 13 216 36 HOH HOH . M 6 HOH A 14 217 37 HOH HOH . M 6 HOH A 15 218 46 HOH HOH . M 6 HOH A 16 219 47 HOH HOH . M 6 HOH A 17 220 48 HOH HOH . M 6 HOH A 18 221 52 HOH HOH . M 6 HOH A 19 222 54 HOH HOH . M 6 HOH A 20 223 55 HOH HOH . M 6 HOH A 21 224 57 HOH HOH . M 6 HOH A 22 225 60 HOH HOH . M 6 HOH A 23 226 66 HOH HOH . M 6 HOH A 24 227 68 HOH HOH . M 6 HOH A 25 228 71 HOH HOH . M 6 HOH A 26 229 73 HOH HOH . M 6 HOH A 27 230 74 HOH HOH . M 6 HOH A 28 231 75 HOH HOH . M 6 HOH A 29 232 76 HOH HOH . M 6 HOH A 30 233 77 HOH HOH . M 6 HOH A 31 234 78 HOH HOH . M 6 HOH A 32 235 82 HOH HOH . M 6 HOH A 33 236 84 HOH HOH . M 6 HOH A 34 237 85 HOH HOH . M 6 HOH A 35 238 88 HOH HOH . M 6 HOH A 36 239 89 HOH HOH . M 6 HOH A 37 240 91 HOH HOH . M 6 HOH A 38 241 92 HOH HOH . M 6 HOH A 39 242 95 HOH HOH . M 6 HOH A 40 243 96 HOH HOH . M 6 HOH A 41 244 97 HOH HOH . M 6 HOH A 42 245 100 HOH HOH . M 6 HOH A 43 246 101 HOH HOH . M 6 HOH A 44 247 102 HOH HOH . M 6 HOH A 45 248 105 HOH HOH . M 6 HOH A 46 249 108 HOH HOH . M 6 HOH A 47 250 109 HOH HOH . M 6 HOH A 48 251 110 HOH HOH . M 6 HOH A 49 252 111 HOH HOH . M 6 HOH A 50 253 114 HOH HOH . M 6 HOH A 51 254 116 HOH HOH . M 6 HOH A 52 255 117 HOH HOH . M 6 HOH A 53 256 123 HOH HOH . M 6 HOH A 54 257 127 HOH HOH . M 6 HOH A 55 258 128 HOH HOH . M 6 HOH A 56 259 129 HOH HOH . M 6 HOH A 57 260 131 HOH HOH . M 6 HOH A 58 261 132 HOH HOH . M 6 HOH A 59 262 134 HOH HOH . M 6 HOH A 60 263 135 HOH HOH . M 6 HOH A 61 264 137 HOH HOH . M 6 HOH A 62 265 139 HOH HOH . M 6 HOH A 63 266 145 HOH HOH . M 6 HOH A 64 267 148 HOH HOH . M 6 HOH A 65 268 149 HOH HOH . M 6 HOH A 66 269 151 HOH HOH . M 6 HOH A 67 270 152 HOH HOH . M 6 HOH A 68 271 156 HOH HOH . M 6 HOH A 69 272 157 HOH HOH . M 6 HOH A 70 273 159 HOH HOH . M 6 HOH A 71 274 160 HOH HOH . M 6 HOH A 72 275 161 HOH HOH . M 6 HOH A 73 276 162 HOH HOH . M 6 HOH A 74 277 165 HOH HOH . M 6 HOH A 75 278 168 HOH HOH . M 6 HOH A 76 279 170 HOH HOH . M 6 HOH A 77 280 175 HOH HOH . M 6 HOH A 78 281 176 HOH HOH . M 6 HOH A 79 282 177 HOH HOH . M 6 HOH A 80 283 178 HOH HOH . M 6 HOH A 81 284 180 HOH HOH . M 6 HOH A 82 285 181 HOH HOH . M 6 HOH A 83 286 182 HOH HOH . M 6 HOH A 84 287 185 HOH HOH . M 6 HOH A 85 288 186 HOH HOH . M 6 HOH A 86 289 188 HOH HOH . M 6 HOH A 87 290 189 HOH HOH . M 6 HOH A 88 291 190 HOH HOH . M 6 HOH A 89 292 191 HOH HOH . M 6 HOH A 90 293 197 HOH HOH . M 6 HOH A 91 294 198 HOH HOH . M 6 HOH A 92 295 199 HOH HOH . M 6 HOH A 93 296 200 HOH HOH . M 6 HOH A 94 297 202 HOH HOH . M 6 HOH A 95 298 203 HOH HOH . M 6 HOH A 96 299 207 HOH HOH . M 6 HOH A 97 300 208 HOH HOH . M 6 HOH A 98 301 209 HOH HOH . M 6 HOH A 99 302 210 HOH HOH . M 6 HOH A 100 303 218 HOH HOH . M 6 HOH A 101 304 219 HOH HOH . M 6 HOH A 102 305 222 HOH HOH . M 6 HOH A 103 306 223 HOH HOH . M 6 HOH A 104 307 224 HOH HOH . M 6 HOH A 105 308 225 HOH HOH . M 6 HOH A 106 309 226 HOH HOH . M 6 HOH A 107 310 227 HOH HOH . M 6 HOH A 108 311 228 HOH HOH . M 6 HOH A 109 312 231 HOH HOH . M 6 HOH A 110 313 232 HOH HOH . M 6 HOH A 111 314 235 HOH HOH . N 6 HOH B 1 206 10 HOH HOH . N 6 HOH B 2 207 13 HOH HOH . N 6 HOH B 3 208 15 HOH HOH . N 6 HOH B 4 209 17 HOH HOH . N 6 HOH B 5 210 19 HOH HOH . N 6 HOH B 6 211 20 HOH HOH . N 6 HOH B 7 212 22 HOH HOH . N 6 HOH B 8 213 25 HOH HOH . N 6 HOH B 9 214 26 HOH HOH . N 6 HOH B 10 215 27 HOH HOH . N 6 HOH B 11 216 29 HOH HOH . N 6 HOH B 12 217 31 HOH HOH . N 6 HOH B 13 218 32 HOH HOH . N 6 HOH B 14 219 34 HOH HOH . N 6 HOH B 15 220 35 HOH HOH . N 6 HOH B 16 221 38 HOH HOH . N 6 HOH B 17 222 39 HOH HOH . N 6 HOH B 18 223 40 HOH HOH . N 6 HOH B 19 224 41 HOH HOH . N 6 HOH B 20 225 42 HOH HOH . N 6 HOH B 21 226 43 HOH HOH . N 6 HOH B 22 227 44 HOH HOH . N 6 HOH B 23 228 45 HOH HOH . N 6 HOH B 24 229 49 HOH HOH . N 6 HOH B 25 230 50 HOH HOH . N 6 HOH B 26 231 51 HOH HOH . N 6 HOH B 27 232 53 HOH HOH . N 6 HOH B 28 233 56 HOH HOH . N 6 HOH B 29 234 58 HOH HOH . N 6 HOH B 30 235 59 HOH HOH . N 6 HOH B 31 236 61 HOH HOH . N 6 HOH B 32 237 62 HOH HOH . N 6 HOH B 33 238 63 HOH HOH . N 6 HOH B 34 239 64 HOH HOH . N 6 HOH B 35 240 65 HOH HOH . N 6 HOH B 36 241 67 HOH HOH . N 6 HOH B 37 242 69 HOH HOH . N 6 HOH B 38 243 70 HOH HOH . N 6 HOH B 39 244 72 HOH HOH . N 6 HOH B 40 245 79 HOH HOH . N 6 HOH B 41 246 80 HOH HOH . N 6 HOH B 42 247 81 HOH HOH . N 6 HOH B 43 248 83 HOH HOH . N 6 HOH B 44 249 86 HOH HOH . N 6 HOH B 45 250 87 HOH HOH . N 6 HOH B 46 251 90 HOH HOH . N 6 HOH B 47 252 93 HOH HOH . N 6 HOH B 48 253 94 HOH HOH . N 6 HOH B 49 254 98 HOH HOH . N 6 HOH B 50 255 99 HOH HOH . N 6 HOH B 51 256 103 HOH HOH . N 6 HOH B 52 257 104 HOH HOH . N 6 HOH B 53 258 106 HOH HOH . N 6 HOH B 54 259 107 HOH HOH . N 6 HOH B 55 260 112 HOH HOH . N 6 HOH B 56 261 113 HOH HOH . N 6 HOH B 57 262 115 HOH HOH . N 6 HOH B 58 263 118 HOH HOH . N 6 HOH B 59 264 119 HOH HOH . N 6 HOH B 60 265 120 HOH HOH . N 6 HOH B 61 266 121 HOH HOH . N 6 HOH B 62 267 122 HOH HOH . N 6 HOH B 63 268 124 HOH HOH . N 6 HOH B 64 269 125 HOH HOH . N 6 HOH B 65 270 126 HOH HOH . N 6 HOH B 66 271 130 HOH HOH . N 6 HOH B 67 272 133 HOH HOH . N 6 HOH B 68 273 136 HOH HOH . N 6 HOH B 69 274 138 HOH HOH . N 6 HOH B 70 275 140 HOH HOH . N 6 HOH B 71 276 141 HOH HOH . N 6 HOH B 72 277 142 HOH HOH . N 6 HOH B 73 278 143 HOH HOH . N 6 HOH B 74 279 144 HOH HOH . N 6 HOH B 75 280 146 HOH HOH . N 6 HOH B 76 281 147 HOH HOH . N 6 HOH B 77 282 150 HOH HOH . N 6 HOH B 78 283 153 HOH HOH . N 6 HOH B 79 284 154 HOH HOH . N 6 HOH B 80 285 155 HOH HOH . N 6 HOH B 81 286 158 HOH HOH . N 6 HOH B 82 287 163 HOH HOH . N 6 HOH B 83 288 164 HOH HOH . N 6 HOH B 84 289 166 HOH HOH . N 6 HOH B 85 290 167 HOH HOH . N 6 HOH B 86 291 169 HOH HOH . N 6 HOH B 87 292 171 HOH HOH . N 6 HOH B 88 293 172 HOH HOH . N 6 HOH B 89 294 173 HOH HOH . N 6 HOH B 90 295 174 HOH HOH . N 6 HOH B 91 296 179 HOH HOH . N 6 HOH B 92 297 183 HOH HOH . N 6 HOH B 93 298 184 HOH HOH . N 6 HOH B 94 299 187 HOH HOH . N 6 HOH B 95 300 192 HOH HOH . N 6 HOH B 96 301 193 HOH HOH . N 6 HOH B 97 302 194 HOH HOH . N 6 HOH B 98 303 195 HOH HOH . N 6 HOH B 99 304 196 HOH HOH . N 6 HOH B 100 305 201 HOH HOH . N 6 HOH B 101 306 204 HOH HOH . N 6 HOH B 102 307 205 HOH HOH . N 6 HOH B 103 308 206 HOH HOH . N 6 HOH B 104 309 211 HOH HOH . N 6 HOH B 105 310 212 HOH HOH . N 6 HOH B 106 311 213 HOH HOH . N 6 HOH B 107 312 214 HOH HOH . N 6 HOH B 108 313 215 HOH HOH . N 6 HOH B 109 314 216 HOH HOH . N 6 HOH B 110 315 217 HOH HOH . N 6 HOH B 111 316 220 HOH HOH . N 6 HOH B 112 317 221 HOH HOH . N 6 HOH B 113 318 229 HOH HOH . N 6 HOH B 114 319 230 HOH HOH . N 6 HOH B 115 320 233 HOH HOH . N 6 HOH B 116 321 234 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 30.505 _atom_site.Cartn_y -1.252 _atom_site.Cartn_z 30.745 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 14.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #