data_2PER # _model_server_result.job_id '_k9ZxIFXeUZ2YDg13ITzLA' _model_server_result.datetime_utc '2024-11-24 04:11:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2per # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 2PER # _exptl.entry_id 2PER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-MERCAPTO-2-NITRO-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PER _cell.length_a 44.05 _cell.length_b 75.927 _cell.length_c 80.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PER _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 50 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 30 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 53 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 33 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.107 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H5 N O4 S' _chem_comp.formula_weight 199.184 _chem_comp.id MNB _chem_comp.mon_nstd_flag . _chem_comp.name '5-MERCAPTO-2-NITRO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C1 MNB doub 237 n y C6 C5 MNB sing 238 n y C6 HC6 MNB sing 239 n n C1 C2 MNB sing 240 n y C1 C10 MNB sing 241 n n C2 C3 MNB doub 242 n y C2 N7 MNB sing 243 n n C3 C4 MNB sing 244 n y C3 HC3 MNB sing 245 n n C4 C5 MNB doub 246 n y C4 HC4 MNB sing 247 n n C5 S5 MNB sing 248 n n S5 HS5 MNB sing 249 n n C10 O12 MNB sing 250 n n C10 O11 MNB doub 251 n n O12 H12 MNB sing 252 n n N7 O9 MNB doub 253 n n N7 O8 MNB sing 254 n n # _atom_sites.entry_id 2PER _atom_sites.fract_transf_matrix[1][1] 0.022701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MNB A 1 401 401 MNB DTN . C 3 HOH A 1 402 1 HOH HOH . C 3 HOH A 2 403 2 HOH HOH . C 3 HOH A 3 404 3 HOH HOH . C 3 HOH A 4 405 4 HOH HOH . C 3 HOH A 5 406 5 HOH HOH . C 3 HOH A 6 407 6 HOH HOH . C 3 HOH A 7 408 7 HOH HOH . C 3 HOH A 8 409 8 HOH HOH . C 3 HOH A 9 410 9 HOH HOH . C 3 HOH A 10 411 10 HOH HOH . C 3 HOH A 11 412 11 HOH HOH . C 3 HOH A 12 413 12 HOH HOH . C 3 HOH A 13 414 13 HOH HOH . C 3 HOH A 14 415 14 HOH HOH . C 3 HOH A 15 416 15 HOH HOH . C 3 HOH A 16 417 16 HOH HOH . C 3 HOH A 17 418 17 HOH HOH . C 3 HOH A 18 419 18 HOH HOH . C 3 HOH A 19 420 19 HOH HOH . C 3 HOH A 20 421 20 HOH HOH . C 3 HOH A 21 422 21 HOH HOH . C 3 HOH A 22 423 22 HOH HOH . C 3 HOH A 23 424 23 HOH HOH . C 3 HOH A 24 425 24 HOH HOH . C 3 HOH A 25 426 25 HOH HOH . C 3 HOH A 26 427 26 HOH HOH . C 3 HOH A 27 428 27 HOH HOH . C 3 HOH A 28 429 28 HOH HOH . C 3 HOH A 29 430 29 HOH HOH . C 3 HOH A 30 431 30 HOH HOH . C 3 HOH A 31 432 31 HOH HOH . C 3 HOH A 32 433 32 HOH HOH . C 3 HOH A 33 434 33 HOH HOH . C 3 HOH A 34 435 34 HOH HOH . C 3 HOH A 35 436 35 HOH HOH . C 3 HOH A 36 437 36 HOH HOH . C 3 HOH A 37 438 37 HOH HOH . C 3 HOH A 38 439 38 HOH HOH . C 3 HOH A 39 440 39 HOH HOH . C 3 HOH A 40 441 40 HOH HOH . C 3 HOH A 41 442 41 HOH HOH . C 3 HOH A 42 443 42 HOH HOH . C 3 HOH A 43 444 43 HOH HOH . C 3 HOH A 44 445 44 HOH HOH . C 3 HOH A 45 446 45 HOH HOH . C 3 HOH A 46 447 46 HOH HOH . C 3 HOH A 47 448 47 HOH HOH . C 3 HOH A 48 449 48 HOH HOH . C 3 HOH A 49 450 49 HOH HOH . C 3 HOH A 50 451 50 HOH HOH . C 3 HOH A 51 452 51 HOH HOH . C 3 HOH A 52 453 52 HOH HOH . C 3 HOH A 53 454 53 HOH HOH . C 3 HOH A 54 455 54 HOH HOH . C 3 HOH A 55 456 55 HOH HOH . C 3 HOH A 56 457 56 HOH HOH . C 3 HOH A 57 458 57 HOH HOH . C 3 HOH A 58 459 58 HOH HOH . C 3 HOH A 59 460 59 HOH HOH . C 3 HOH A 60 461 60 HOH HOH . C 3 HOH A 61 462 61 HOH HOH . C 3 HOH A 62 463 62 HOH HOH . C 3 HOH A 63 464 63 HOH HOH . C 3 HOH A 64 465 64 HOH HOH . C 3 HOH A 65 466 65 HOH HOH . C 3 HOH A 66 467 66 HOH HOH . C 3 HOH A 67 468 67 HOH HOH . C 3 HOH A 68 469 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 MNB . . . B 2 1.354 20.869 24.176 1 39.75 ? C6 MNB 401 A 1 HETATM 2 C C1 MNB . . . B 2 2.066 21.396 23.111 1 39.54 ? C1 MNB 401 A 1 HETATM 3 C C2 MNB . . . B 2 1.894 22.834 22.789 1 40.07 ? C2 MNB 401 A 1 HETATM 4 C C3 MNB . . . B 2 1.015 23.629 23.54 1 40.27 ? C3 MNB 401 A 1 HETATM 5 C C4 MNB . . . B 2 0.341 23.048 24.611 1 41.33 ? C4 MNB 401 A 1 HETATM 6 C C5 MNB . . . B 2 0.528 21.696 24.914 1 41.94 ? C5 MNB 401 A 1 HETATM 7 S S5 MNB . . . B 2 -0.297 20.946 26.219 1 45.2 ? S5 MNB 401 A 1 HETATM 8 C C10 MNB . . . B 2 2.989 20.459 22.348 1 39.4 ? C10 MNB 401 A 1 HETATM 9 O O12 MNB . . . B 2 2.562 19.649 21.519 1 37.76 ? O12 MNB 401 A 1 HETATM 10 O O11 MNB . . . B 2 4.296 20.527 22.629 1 39.17 ? O11 MNB 401 A 1 HETATM 11 N N7 MNB . . . B 2 2.576 23.427 21.722 1 41.12 ? N7 MNB 401 A 1 HETATM 12 O O9 MNB . . . B 2 2.483 24.624 21.632 1 41.7 ? O9 MNB 401 A 1 HETATM 13 O O8 MNB . . . B 2 3.241 22.791 20.896 1 42.93 ? O8 MNB 401 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #