data_2PEY
#
_model_server_result.job_id            bqtHkiqHoYvSja5F5rCazQ 
_model_server_result.datetime_utc      '2024-11-15 10:17:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pey 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    2PEY 
#
_exptl.entry_id    2PEY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              411.202 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PEY 
_cell.length_a            43.43 
_cell.length_b            59.75 
_cell.length_c            138.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PEY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C10 H15 N5 O9 P2' 
_chem_comp.formula_weight    411.202 
_chem_comp.id                DAT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DADP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B DAT doub 126 n n 
PB O2B DAT sing 127 n n 
PB O3B DAT sing 128 n n 
PB O3A DAT sing 129 n n 
O2B HOB2 DAT sing 130 n n 
O3B HOB3 DAT sing 131 n n 
PA O1A DAT doub 132 n n 
PA O2A DAT sing 133 n n 
PA O3A DAT sing 134 n n 
PA O5' DAT sing 135 n n 
O2A HOA2 DAT sing 136 n n 
O5' C5' DAT sing 137 n n 
C5' C4' DAT sing 138 n n 
C5' "H5'1" DAT sing 139 n n 
C5' "H5'2" DAT sing 140 n n 
C4' O4' DAT sing 141 n n 
C4' C3' DAT sing 142 n n 
C4' H4' DAT sing 143 n n 
O4' C1' DAT sing 144 n n 
C3' O3' DAT sing 145 n n 
C3' C2' DAT sing 146 n n 
C3' H3' DAT sing 147 n n 
O3' HO3' DAT sing 148 n n 
C2' C1' DAT sing 149 n n 
C2' "H2'1" DAT sing 150 n n 
C2' "H2'2" DAT sing 151 n n 
C1' N9 DAT sing 152 n n 
C1' H1' DAT sing 153 n n 
N9 C8 DAT sing 154 n y 
N9 C4 DAT sing 155 n y 
C8 N7 DAT doub 156 n y 
C8 H8 DAT sing 157 n n 
N7 C5 DAT sing 158 n y 
C5 C6 DAT sing 159 n y 
C5 C4 DAT doub 160 n y 
C6 N6 DAT sing 161 n n 
C6 N1 DAT doub 162 n y 
N6 HN61 DAT sing 163 n n 
N6 HN62 DAT sing 164 n n 
N1 C2 DAT sing 165 n y 
C2 N3 DAT doub 166 n y 
C2 H2 DAT sing 167 n n 
N3 C4 DAT sing 168 n y 
#
_atom_sites.entry_id                     2PEY 
_atom_sites.fract_transf_matrix[1][1]    0.023026 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADX A 1 400 400 ADX ADX . 
D 3 DAT A 1 300 300 DAT DAT . 
E 3 DAT B 1 227 200 DAT DAT . 
F 4 HOH A 1 401 2 HOH HOH . 
F 4 HOH A 2 402 5 HOH HOH . 
F 4 HOH A 3 403 6 HOH HOH . 
F 4 HOH A 4 404 10 HOH HOH . 
F 4 HOH A 5 405 12 HOH HOH . 
F 4 HOH A 6 406 13 HOH HOH . 
F 4 HOH A 7 407 14 HOH HOH . 
F 4 HOH A 8 408 15 HOH HOH . 
F 4 HOH A 9 409 19 HOH HOH . 
F 4 HOH A 10 410 21 HOH HOH . 
F 4 HOH A 11 411 25 HOH HOH . 
F 4 HOH A 12 412 26 HOH HOH . 
F 4 HOH A 13 413 32 HOH HOH . 
F 4 HOH A 14 414 33 HOH HOH . 
F 4 HOH A 15 415 35 HOH HOH . 
F 4 HOH A 16 416 41 HOH HOH . 
F 4 HOH A 17 417 42 HOH HOH . 
F 4 HOH A 18 418 43 HOH HOH . 
F 4 HOH A 19 419 44 HOH HOH . 
F 4 HOH A 20 420 46 HOH HOH . 
F 4 HOH A 21 421 47 HOH HOH . 
F 4 HOH A 22 422 48 HOH HOH . 
F 4 HOH A 23 423 50 HOH HOH . 
F 4 HOH A 24 424 51 HOH HOH . 
F 4 HOH A 25 425 52 HOH HOH . 
F 4 HOH A 26 426 54 HOH HOH . 
F 4 HOH A 27 427 56 HOH HOH . 
F 4 HOH A 28 428 58 HOH HOH . 
F 4 HOH A 29 429 61 HOH HOH . 
F 4 HOH A 30 430 62 HOH HOH . 
F 4 HOH A 31 431 64 HOH HOH . 
F 4 HOH A 32 432 65 HOH HOH . 
F 4 HOH A 33 433 66 HOH HOH . 
F 4 HOH A 34 434 67 HOH HOH . 
F 4 HOH A 35 435 68 HOH HOH . 
F 4 HOH A 36 436 69 HOH HOH . 
F 4 HOH A 37 437 72 HOH HOH . 
F 4 HOH A 38 438 73 HOH HOH . 
F 4 HOH A 39 439 74 HOH HOH . 
F 4 HOH A 40 440 76 HOH HOH . 
F 4 HOH A 41 441 79 HOH HOH . 
F 4 HOH A 42 442 80 HOH HOH . 
F 4 HOH A 43 443 83 HOH HOH . 
F 4 HOH A 44 444 84 HOH HOH . 
F 4 HOH A 45 445 87 HOH HOH . 
F 4 HOH A 46 446 88 HOH HOH . 
F 4 HOH A 47 447 91 HOH HOH . 
F 4 HOH A 48 448 93 HOH HOH . 
F 4 HOH A 49 449 94 HOH HOH . 
F 4 HOH A 50 450 95 HOH HOH . 
F 4 HOH A 51 451 97 HOH HOH . 
F 4 HOH A 52 452 98 HOH HOH . 
F 4 HOH A 53 453 99 HOH HOH . 
F 4 HOH A 54 454 100 HOH HOH . 
F 4 HOH A 55 455 103 HOH HOH . 
F 4 HOH A 56 456 106 HOH HOH . 
F 4 HOH A 57 457 107 HOH HOH . 
F 4 HOH A 58 458 111 HOH HOH . 
F 4 HOH A 59 459 114 HOH HOH . 
F 4 HOH A 60 460 116 HOH HOH . 
F 4 HOH A 61 461 117 HOH HOH . 
F 4 HOH A 62 462 118 HOH HOH . 
F 4 HOH A 63 463 120 HOH HOH . 
F 4 HOH A 64 464 123 HOH HOH . 
F 4 HOH A 65 465 124 HOH HOH . 
F 4 HOH A 66 466 125 HOH HOH . 
F 4 HOH A 67 467 128 HOH HOH . 
F 4 HOH A 68 468 132 HOH HOH . 
F 4 HOH A 69 469 133 HOH HOH . 
F 4 HOH A 70 470 134 HOH HOH . 
F 4 HOH A 71 471 135 HOH HOH . 
F 4 HOH A 72 472 136 HOH HOH . 
F 4 HOH A 73 473 137 HOH HOH . 
F 4 HOH A 74 474 138 HOH HOH . 
F 4 HOH A 75 475 139 HOH HOH . 
F 4 HOH A 76 476 144 HOH HOH . 
F 4 HOH A 77 477 145 HOH HOH . 
F 4 HOH A 78 478 149 HOH HOH . 
F 4 HOH A 79 479 151 HOH HOH . 
F 4 HOH A 80 480 155 HOH HOH . 
F 4 HOH A 81 481 156 HOH HOH . 
F 4 HOH A 82 482 157 HOH HOH . 
F 4 HOH A 83 483 158 HOH HOH . 
F 4 HOH A 84 484 160 HOH HOH . 
F 4 HOH A 85 485 163 HOH HOH . 
F 4 HOH A 86 486 165 HOH HOH . 
F 4 HOH A 87 487 166 HOH HOH . 
F 4 HOH A 88 488 167 HOH HOH . 
F 4 HOH A 89 489 170 HOH HOH . 
F 4 HOH A 90 490 171 HOH HOH . 
F 4 HOH A 91 491 172 HOH HOH . 
G 4 HOH B 1 228 1 HOH HOH . 
G 4 HOH B 2 229 3 HOH HOH . 
G 4 HOH B 3 230 4 HOH HOH . 
G 4 HOH B 4 231 7 HOH HOH . 
G 4 HOH B 5 232 8 HOH HOH . 
G 4 HOH B 6 233 9 HOH HOH . 
G 4 HOH B 7 234 11 HOH HOH . 
G 4 HOH B 8 235 16 HOH HOH . 
G 4 HOH B 9 236 17 HOH HOH . 
G 4 HOH B 10 237 18 HOH HOH . 
G 4 HOH B 11 238 20 HOH HOH . 
G 4 HOH B 12 239 22 HOH HOH . 
G 4 HOH B 13 240 23 HOH HOH . 
G 4 HOH B 14 241 24 HOH HOH . 
G 4 HOH B 15 242 27 HOH HOH . 
G 4 HOH B 16 243 28 HOH HOH . 
G 4 HOH B 17 244 29 HOH HOH . 
G 4 HOH B 18 245 30 HOH HOH . 
G 4 HOH B 19 246 31 HOH HOH . 
G 4 HOH B 20 247 34 HOH HOH . 
G 4 HOH B 21 248 36 HOH HOH . 
G 4 HOH B 22 249 37 HOH HOH . 
G 4 HOH B 23 250 38 HOH HOH . 
G 4 HOH B 24 251 39 HOH HOH . 
G 4 HOH B 25 252 40 HOH HOH . 
G 4 HOH B 26 253 45 HOH HOH . 
G 4 HOH B 27 254 49 HOH HOH . 
G 4 HOH B 28 255 53 HOH HOH . 
G 4 HOH B 29 256 55 HOH HOH . 
G 4 HOH B 30 257 57 HOH HOH . 
G 4 HOH B 31 258 59 HOH HOH . 
G 4 HOH B 32 259 60 HOH HOH . 
G 4 HOH B 33 260 63 HOH HOH . 
G 4 HOH B 34 261 70 HOH HOH . 
G 4 HOH B 35 262 71 HOH HOH . 
G 4 HOH B 36 263 75 HOH HOH . 
G 4 HOH B 37 264 77 HOH HOH . 
G 4 HOH B 38 265 78 HOH HOH . 
G 4 HOH B 39 266 81 HOH HOH . 
G 4 HOH B 40 267 82 HOH HOH . 
G 4 HOH B 41 268 85 HOH HOH . 
G 4 HOH B 42 269 86 HOH HOH . 
G 4 HOH B 43 270 89 HOH HOH . 
G 4 HOH B 44 271 90 HOH HOH . 
G 4 HOH B 45 272 92 HOH HOH . 
G 4 HOH B 46 273 96 HOH HOH . 
G 4 HOH B 47 274 101 HOH HOH . 
G 4 HOH B 48 275 102 HOH HOH . 
G 4 HOH B 49 276 104 HOH HOH . 
G 4 HOH B 50 277 105 HOH HOH . 
G 4 HOH B 51 278 108 HOH HOH . 
G 4 HOH B 52 279 109 HOH HOH . 
G 4 HOH B 53 280 110 HOH HOH . 
G 4 HOH B 54 281 112 HOH HOH . 
G 4 HOH B 55 282 113 HOH HOH . 
G 4 HOH B 56 283 115 HOH HOH . 
G 4 HOH B 57 284 119 HOH HOH . 
G 4 HOH B 58 285 121 HOH HOH . 
G 4 HOH B 59 286 122 HOH HOH . 
G 4 HOH B 60 287 126 HOH HOH . 
G 4 HOH B 61 288 127 HOH HOH . 
G 4 HOH B 62 289 129 HOH HOH . 
G 4 HOH B 63 290 130 HOH HOH . 
G 4 HOH B 64 291 131 HOH HOH . 
G 4 HOH B 65 292 140 HOH HOH . 
G 4 HOH B 66 293 141 HOH HOH . 
G 4 HOH B 67 294 142 HOH HOH . 
G 4 HOH B 68 295 143 HOH HOH . 
G 4 HOH B 69 296 146 HOH HOH . 
G 4 HOH B 70 297 147 HOH HOH . 
G 4 HOH B 71 298 148 HOH HOH . 
G 4 HOH B 72 299 150 HOH HOH . 
G 4 HOH B 73 300 152 HOH HOH . 
G 4 HOH B 74 301 153 HOH HOH . 
G 4 HOH B 75 302 154 HOH HOH . 
G 4 HOH B 76 303 159 HOH HOH . 
G 4 HOH B 77 304 161 HOH HOH . 
G 4 HOH B 78 305 162 HOH HOH . 
G 4 HOH B 79 306 164 HOH HOH . 
G 4 HOH B 80 307 168 HOH HOH . 
G 4 HOH B 81 308 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB DAT . . . D 3 11.256 -3.649 22.313 1 17.89 ? PB DAT 300 A 1 
HETATM 2 O O1B DAT . . . D 3 12.172 -4.848 22.492 1 17.44 ? O1B DAT 300 A 1 
HETATM 3 O O2B DAT . . . D 3 12 -2.352 22.58 1 14.46 ? O2B DAT 300 A 1 
HETATM 4 O O3B DAT . . . D 3 10.472 -3.637 21.019 1 14.33 ? O3B DAT 300 A 1 
HETATM 5 P PA DAT . . . D 3 8.6 -4.155 23.409 1 15.57 ? PA DAT 300 A 1 
HETATM 6 O O1A DAT . . . D 3 7.811 -2.964 22.946 1 17.09 ? O1A DAT 300 A 1 
HETATM 7 O O2A DAT . . . D 3 8.353 -5.489 22.751 1 15.86 ? O2A DAT 300 A 1 
HETATM 8 O O3A DAT . . . D 3 10.176 -3.807 23.501 1 15.66 ? O3A DAT 300 A 1 
HETATM 9 O O5' DAT . . . D 3 8.301 -4.443 24.957 1 16.09 ? O5' DAT 300 A 1 
HETATM 10 C C5' DAT . . . D 3 8.035 -3.401 25.891 1 18.73 ? C5' DAT 300 A 1 
HETATM 11 C C4' DAT . . . D 3 7.279 -3.959 27.096 1 18.28 ? C4' DAT 300 A 1 
HETATM 12 O O4' DAT . . . D 3 7.147 -2.957 28.1 1 17.49 ? O4' DAT 300 A 1 
HETATM 13 C C3' DAT . . . D 3 5.881 -4.385 26.746 1 19.24 ? C3' DAT 300 A 1 
HETATM 14 O O3' DAT . . . D 3 5.661 -5.581 27.482 1 21.68 ? O3' DAT 300 A 1 
HETATM 15 C C2' DAT . . . D 3 4.96 -3.302 27.286 1 19.57 ? C2' DAT 300 A 1 
HETATM 16 C C1' DAT . . . D 3 5.793 -2.621 28.368 1 19.78 ? C1' DAT 300 A 1 
HETATM 17 N N9 DAT . . . D 3 5.623 -1.136 28.459 1 20.15 ? N9 DAT 300 A 1 
HETATM 18 C C8 DAT . . . D 3 5.255 -0.522 29.593 1 20.14 ? C8 DAT 300 A 1 
HETATM 19 N N7 DAT . . . D 3 5.18 0.799 29.386 1 21.03 ? N7 DAT 300 A 1 
HETATM 20 C C5 DAT . . . D 3 5.527 1.029 28.092 1 20.54 ? C5 DAT 300 A 1 
HETATM 21 C C6 DAT . . . D 3 5.625 2.188 27.319 1 20.06 ? C6 DAT 300 A 1 
HETATM 22 N N6 DAT . . . D 3 5.356 3.401 27.85 1 19.37 ? N6 DAT 300 A 1 
HETATM 23 N N1 DAT . . . D 3 5.996 2.096 26.018 1 20.32 ? N1 DAT 300 A 1 
HETATM 24 C C2 DAT . . . D 3 6.268 0.894 25.474 1 19.39 ? C2 DAT 300 A 1 
HETATM 25 N N3 DAT . . . D 3 6.168 -0.233 26.192 1 17.55 ? N3 DAT 300 A 1 
HETATM 26 C C4 DAT . . . D 3 5.803 -0.195 27.507 1 19.93 ? C4 DAT 300 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#