data_2PEY # _model_server_result.job_id q_pYYQ3F-SWkj3Np5GiAzw _model_server_result.datetime_utc '2024-11-15 10:47:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 2PEY # _exptl.entry_id 2PEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-PHOSPHOSULFATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PEY _cell.length_a 43.43 _cell.length_b 59.75 _cell.length_c 138.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O10 P S' _chem_comp.formula_weight 427.284 _chem_comp.id ADX _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-PHOSPHOSULFATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SB O1B ADX doub 1 n n SB O2B ADX doub 2 n n SB O3B ADX sing 3 n n SB O3A ADX sing 4 n n O3B HOB3 ADX sing 5 n n PA O1A ADX doub 6 n n PA O2A ADX sing 7 n n PA O3A ADX sing 8 n n PA O5' ADX sing 9 n n O2A HOA2 ADX sing 10 n n O5' C5' ADX sing 11 n n C5' C4' ADX sing 12 n n C5' H5' ADX sing 13 n n C5' "H5''" ADX sing 14 n n C4' O4' ADX sing 15 n n C4' C3' ADX sing 16 n n C4' H4' ADX sing 17 n n O4' C1' ADX sing 18 n n C3' O3' ADX sing 19 n n C3' C2' ADX sing 20 n n C3' H3' ADX sing 21 n n O3' HO3' ADX sing 22 n n C2' O2' ADX sing 23 n n C2' C1' ADX sing 24 n n C2' H2' ADX sing 25 n n O2' HO2' ADX sing 26 n n C1' N9 ADX sing 27 n n C1' H1' ADX sing 28 n n N9 C8 ADX sing 29 n y N9 C4 ADX sing 30 n y C8 N7 ADX doub 31 n y C8 H8 ADX sing 32 n n N7 C5 ADX sing 33 n y C5 C6 ADX sing 34 n y C5 C4 ADX doub 35 n y C6 N6 ADX sing 36 n n C6 N1 ADX doub 37 n y N6 HN61 ADX sing 38 n n N6 HN62 ADX sing 39 n n N1 C2 ADX sing 40 n y C2 N3 ADX doub 41 n y C2 H2 ADX sing 42 n n N3 C4 ADX sing 43 n y # _atom_sites.entry_id 2PEY _atom_sites.fract_transf_matrix[1][1] 0.023026 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADX A 1 400 400 ADX ADX . D 3 DAT A 1 300 300 DAT DAT . E 3 DAT B 1 227 200 DAT DAT . F 4 HOH A 1 401 2 HOH HOH . F 4 HOH A 2 402 5 HOH HOH . F 4 HOH A 3 403 6 HOH HOH . F 4 HOH A 4 404 10 HOH HOH . F 4 HOH A 5 405 12 HOH HOH . F 4 HOH A 6 406 13 HOH HOH . F 4 HOH A 7 407 14 HOH HOH . F 4 HOH A 8 408 15 HOH HOH . F 4 HOH A 9 409 19 HOH HOH . F 4 HOH A 10 410 21 HOH HOH . F 4 HOH A 11 411 25 HOH HOH . F 4 HOH A 12 412 26 HOH HOH . F 4 HOH A 13 413 32 HOH HOH . F 4 HOH A 14 414 33 HOH HOH . F 4 HOH A 15 415 35 HOH HOH . F 4 HOH A 16 416 41 HOH HOH . F 4 HOH A 17 417 42 HOH HOH . F 4 HOH A 18 418 43 HOH HOH . F 4 HOH A 19 419 44 HOH HOH . F 4 HOH A 20 420 46 HOH HOH . F 4 HOH A 21 421 47 HOH HOH . F 4 HOH A 22 422 48 HOH HOH . F 4 HOH A 23 423 50 HOH HOH . F 4 HOH A 24 424 51 HOH HOH . F 4 HOH A 25 425 52 HOH HOH . F 4 HOH A 26 426 54 HOH HOH . F 4 HOH A 27 427 56 HOH HOH . F 4 HOH A 28 428 58 HOH HOH . F 4 HOH A 29 429 61 HOH HOH . F 4 HOH A 30 430 62 HOH HOH . F 4 HOH A 31 431 64 HOH HOH . F 4 HOH A 32 432 65 HOH HOH . F 4 HOH A 33 433 66 HOH HOH . F 4 HOH A 34 434 67 HOH HOH . F 4 HOH A 35 435 68 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 72 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 74 HOH HOH . F 4 HOH A 40 440 76 HOH HOH . F 4 HOH A 41 441 79 HOH HOH . F 4 HOH A 42 442 80 HOH HOH . F 4 HOH A 43 443 83 HOH HOH . F 4 HOH A 44 444 84 HOH HOH . F 4 HOH A 45 445 87 HOH HOH . F 4 HOH A 46 446 88 HOH HOH . F 4 HOH A 47 447 91 HOH HOH . F 4 HOH A 48 448 93 HOH HOH . F 4 HOH A 49 449 94 HOH HOH . F 4 HOH A 50 450 95 HOH HOH . F 4 HOH A 51 451 97 HOH HOH . F 4 HOH A 52 452 98 HOH HOH . F 4 HOH A 53 453 99 HOH HOH . F 4 HOH A 54 454 100 HOH HOH . F 4 HOH A 55 455 103 HOH HOH . F 4 HOH A 56 456 106 HOH HOH . F 4 HOH A 57 457 107 HOH HOH . F 4 HOH A 58 458 111 HOH HOH . F 4 HOH A 59 459 114 HOH HOH . F 4 HOH A 60 460 116 HOH HOH . F 4 HOH A 61 461 117 HOH HOH . F 4 HOH A 62 462 118 HOH HOH . F 4 HOH A 63 463 120 HOH HOH . F 4 HOH A 64 464 123 HOH HOH . F 4 HOH A 65 465 124 HOH HOH . F 4 HOH A 66 466 125 HOH HOH . F 4 HOH A 67 467 128 HOH HOH . F 4 HOH A 68 468 132 HOH HOH . F 4 HOH A 69 469 133 HOH HOH . F 4 HOH A 70 470 134 HOH HOH . F 4 HOH A 71 471 135 HOH HOH . F 4 HOH A 72 472 136 HOH HOH . F 4 HOH A 73 473 137 HOH HOH . F 4 HOH A 74 474 138 HOH HOH . F 4 HOH A 75 475 139 HOH HOH . F 4 HOH A 76 476 144 HOH HOH . F 4 HOH A 77 477 145 HOH HOH . F 4 HOH A 78 478 149 HOH HOH . F 4 HOH A 79 479 151 HOH HOH . F 4 HOH A 80 480 155 HOH HOH . F 4 HOH A 81 481 156 HOH HOH . F 4 HOH A 82 482 157 HOH HOH . F 4 HOH A 83 483 158 HOH HOH . F 4 HOH A 84 484 160 HOH HOH . F 4 HOH A 85 485 163 HOH HOH . F 4 HOH A 86 486 165 HOH HOH . F 4 HOH A 87 487 166 HOH HOH . F 4 HOH A 88 488 167 HOH HOH . F 4 HOH A 89 489 170 HOH HOH . F 4 HOH A 90 490 171 HOH HOH . F 4 HOH A 91 491 172 HOH HOH . G 4 HOH B 1 228 1 HOH HOH . G 4 HOH B 2 229 3 HOH HOH . G 4 HOH B 3 230 4 HOH HOH . G 4 HOH B 4 231 7 HOH HOH . G 4 HOH B 5 232 8 HOH HOH . G 4 HOH B 6 233 9 HOH HOH . G 4 HOH B 7 234 11 HOH HOH . G 4 HOH B 8 235 16 HOH HOH . G 4 HOH B 9 236 17 HOH HOH . G 4 HOH B 10 237 18 HOH HOH . G 4 HOH B 11 238 20 HOH HOH . G 4 HOH B 12 239 22 HOH HOH . G 4 HOH B 13 240 23 HOH HOH . G 4 HOH B 14 241 24 HOH HOH . G 4 HOH B 15 242 27 HOH HOH . G 4 HOH B 16 243 28 HOH HOH . G 4 HOH B 17 244 29 HOH HOH . G 4 HOH B 18 245 30 HOH HOH . G 4 HOH B 19 246 31 HOH HOH . G 4 HOH B 20 247 34 HOH HOH . G 4 HOH B 21 248 36 HOH HOH . G 4 HOH B 22 249 37 HOH HOH . G 4 HOH B 23 250 38 HOH HOH . G 4 HOH B 24 251 39 HOH HOH . G 4 HOH B 25 252 40 HOH HOH . G 4 HOH B 26 253 45 HOH HOH . G 4 HOH B 27 254 49 HOH HOH . G 4 HOH B 28 255 53 HOH HOH . G 4 HOH B 29 256 55 HOH HOH . G 4 HOH B 30 257 57 HOH HOH . G 4 HOH B 31 258 59 HOH HOH . G 4 HOH B 32 259 60 HOH HOH . G 4 HOH B 33 260 63 HOH HOH . G 4 HOH B 34 261 70 HOH HOH . G 4 HOH B 35 262 71 HOH HOH . G 4 HOH B 36 263 75 HOH HOH . G 4 HOH B 37 264 77 HOH HOH . G 4 HOH B 38 265 78 HOH HOH . G 4 HOH B 39 266 81 HOH HOH . G 4 HOH B 40 267 82 HOH HOH . G 4 HOH B 41 268 85 HOH HOH . G 4 HOH B 42 269 86 HOH HOH . G 4 HOH B 43 270 89 HOH HOH . G 4 HOH B 44 271 90 HOH HOH . G 4 HOH B 45 272 92 HOH HOH . G 4 HOH B 46 273 96 HOH HOH . G 4 HOH B 47 274 101 HOH HOH . G 4 HOH B 48 275 102 HOH HOH . G 4 HOH B 49 276 104 HOH HOH . G 4 HOH B 50 277 105 HOH HOH . G 4 HOH B 51 278 108 HOH HOH . G 4 HOH B 52 279 109 HOH HOH . G 4 HOH B 53 280 110 HOH HOH . G 4 HOH B 54 281 112 HOH HOH . G 4 HOH B 55 282 113 HOH HOH . G 4 HOH B 56 283 115 HOH HOH . G 4 HOH B 57 284 119 HOH HOH . G 4 HOH B 58 285 121 HOH HOH . G 4 HOH B 59 286 122 HOH HOH . G 4 HOH B 60 287 126 HOH HOH . G 4 HOH B 61 288 127 HOH HOH . G 4 HOH B 62 289 129 HOH HOH . G 4 HOH B 63 290 130 HOH HOH . G 4 HOH B 64 291 131 HOH HOH . G 4 HOH B 65 292 140 HOH HOH . G 4 HOH B 66 293 141 HOH HOH . G 4 HOH B 67 294 142 HOH HOH . G 4 HOH B 68 295 143 HOH HOH . G 4 HOH B 69 296 146 HOH HOH . G 4 HOH B 70 297 147 HOH HOH . G 4 HOH B 71 298 148 HOH HOH . G 4 HOH B 72 299 150 HOH HOH . G 4 HOH B 73 300 152 HOH HOH . G 4 HOH B 74 301 153 HOH HOH . G 4 HOH B 75 302 154 HOH HOH . G 4 HOH B 76 303 159 HOH HOH . G 4 HOH B 77 304 161 HOH HOH . G 4 HOH B 78 305 162 HOH HOH . G 4 HOH B 79 306 164 HOH HOH . G 4 HOH B 80 307 168 HOH HOH . G 4 HOH B 81 308 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SB ADX . . . C 2 20.302 -4.374 16.017 1 14.64 ? SB ADX 400 A 1 HETATM 2 O O1B ADX . . . C 2 19.714 -3.063 15.709 1 12.34 ? O1B ADX 400 A 1 HETATM 3 O O2B ADX . . . C 2 20.832 -4.971 14.794 1 15.72 ? O2B ADX 400 A 1 HETATM 4 O O3B ADX . . . C 2 21.333 -4.163 17.06 1 14.26 ? O3B ADX 400 A 1 HETATM 5 P PA ADX . . . C 2 17.692 -5.579 16.004 1 16.57 ? PA ADX 400 A 1 HETATM 6 O O1A ADX . . . C 2 16.731 -4.589 16.615 1 14.74 ? O1A ADX 400 A 1 HETATM 7 O O2A ADX . . . C 2 17.822 -5.775 14.519 1 15.58 ? O2A ADX 400 A 1 HETATM 8 O O3A ADX . . . C 2 19.145 -5.324 16.65 1 16.26 ? O3A ADX 400 A 1 HETATM 9 O O5' ADX . . . C 2 17.324 -6.983 16.67 1 20.01 ? O5' ADX 400 A 1 HETATM 10 C C5' ADX . . . C 2 17.04 -6.999 18.073 1 22.42 ? C5' ADX 400 A 1 HETATM 11 C C4' ADX . . . C 2 16.1 -8.144 18.383 1 25.17 ? C4' ADX 400 A 1 HETATM 12 O O4' ADX . . . C 2 16.781 -9.362 18.026 1 24.32 ? O4' ADX 400 A 1 HETATM 13 C C3' ADX . . . C 2 15.797 -8.226 19.888 1 25.95 ? C3' ADX 400 A 1 HETATM 14 O O3' ADX . . . C 2 14.456 -7.854 20.191 1 30.73 ? O3' ADX 400 A 1 HETATM 15 C C2' ADX . . . C 2 16.02 -9.679 20.107 1 26.01 ? C2' ADX 400 A 1 HETATM 16 O O2' ADX . . . C 2 15.253 -10.414 20.891 1 28.47 ? O2' ADX 400 A 1 HETATM 17 C C1' ADX . . . C 2 16.991 -10.042 19.291 1 22.44 ? C1' ADX 400 A 1 HETATM 18 N N9 ADX . . . C 2 18.206 -10.631 19.47 1 21.36 ? N9 ADX 400 A 1 HETATM 19 C C8 ADX . . . C 2 18.611 -11.823 19.042 1 20.45 ? C8 ADX 400 A 1 HETATM 20 N N7 ADX . . . C 2 19.953 -11.837 19.333 1 21.34 ? N7 ADX 400 A 1 HETATM 21 C C5 ADX . . . C 2 20.316 -10.633 19.871 1 19.72 ? C5 ADX 400 A 1 HETATM 22 C C6 ADX . . . C 2 21.493 -10.069 20.355 1 20.42 ? C6 ADX 400 A 1 HETATM 23 N N6 ADX . . . C 2 22.641 -10.778 20.343 1 20.59 ? N6 ADX 400 A 1 HETATM 24 N N1 ADX . . . C 2 21.502 -8.785 20.837 1 20.7 ? N1 ADX 400 A 1 HETATM 25 C C2 ADX . . . C 2 20.395 -8.036 20.862 1 20.77 ? C2 ADX 400 A 1 HETATM 26 N N3 ADX . . . C 2 19.235 -8.56 20.409 1 18.34 ? N3 ADX 400 A 1 HETATM 27 C C4 ADX . . . C 2 19.186 -9.838 19.911 1 20.23 ? C4 ADX 400 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 385 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #