data_2PFW # _model_server_result.job_id S1aXmQTkWxnj0a8DoP1S9w _model_server_result.datetime_utc '2024-11-14 13:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pfw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":118}' # _entry.id 2PFW # _exptl.entry_id 2PFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PFW _cell.length_a 58.5 _cell.length_b 73.14 _cell.length_c 73.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N GLN 3 A GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C GLN 26 A GLN 25 1_555 A N MSE 27 A MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C MSE 27 A MSE 26 1_555 A N LEU 28 A LEU 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C LEU 34 A LEU 33 1_555 A N MSE 35 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 35 A MSE 34 1_555 A N ALA 36 A ALA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C MSE 2 B MSE 1 1_555 B N GLN 3 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C GLN 26 B GLN 25 1_555 B N MSE 27 B MSE 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 27 B MSE 26 1_555 B N LEU 28 B LEU 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 B C LEU 34 B LEU 33 1_555 B N MSE 35 B MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 B C MSE 35 B MSE 34 1_555 B N ALA 36 B ALA 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 2PFW _atom_sites.fract_transf_matrix[1][1] 0.01709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 116 4 EDO EDO . D 2 EDO B 1 116 1 EDO EDO . E 2 EDO B 1 117 2 EDO EDO . F 2 EDO B 1 118 3 EDO EDO . G 2 EDO B 1 119 5 EDO EDO . H 3 HOH A 1 117 6 HOH HOH . H 3 HOH A 2 118 7 HOH HOH . H 3 HOH A 3 119 12 HOH HOH . H 3 HOH A 4 120 14 HOH HOH . H 3 HOH A 5 121 15 HOH HOH . H 3 HOH A 6 122 16 HOH HOH . H 3 HOH A 7 123 17 HOH HOH . H 3 HOH A 8 124 18 HOH HOH . H 3 HOH A 9 125 20 HOH HOH . H 3 HOH A 10 126 21 HOH HOH . H 3 HOH A 11 127 22 HOH HOH . H 3 HOH A 12 128 25 HOH HOH . H 3 HOH A 13 129 26 HOH HOH . H 3 HOH A 14 130 28 HOH HOH . H 3 HOH A 15 131 29 HOH HOH . H 3 HOH A 16 132 30 HOH HOH . H 3 HOH A 17 133 32 HOH HOH . H 3 HOH A 18 134 33 HOH HOH . H 3 HOH A 19 135 35 HOH HOH . H 3 HOH A 20 136 39 HOH HOH . H 3 HOH A 21 137 40 HOH HOH . H 3 HOH A 22 138 41 HOH HOH . H 3 HOH A 23 139 42 HOH HOH . H 3 HOH A 24 140 43 HOH HOH . H 3 HOH A 25 141 47 HOH HOH . H 3 HOH A 26 142 48 HOH HOH . H 3 HOH A 27 143 51 HOH HOH . H 3 HOH A 28 144 52 HOH HOH . H 3 HOH A 29 145 53 HOH HOH . H 3 HOH A 30 146 54 HOH HOH . H 3 HOH A 31 147 55 HOH HOH . H 3 HOH A 32 148 63 HOH HOH . H 3 HOH A 33 149 64 HOH HOH . H 3 HOH A 34 150 66 HOH HOH . H 3 HOH A 35 151 69 HOH HOH . H 3 HOH A 36 152 70 HOH HOH . H 3 HOH A 37 153 71 HOH HOH . H 3 HOH A 38 154 72 HOH HOH . H 3 HOH A 39 155 73 HOH HOH . H 3 HOH A 40 156 74 HOH HOH . H 3 HOH A 41 157 77 HOH HOH . H 3 HOH A 42 158 79 HOH HOH . H 3 HOH A 43 159 82 HOH HOH . H 3 HOH A 44 160 89 HOH HOH . H 3 HOH A 45 161 90 HOH HOH . H 3 HOH A 46 162 91 HOH HOH . H 3 HOH A 47 163 92 HOH HOH . H 3 HOH A 48 164 94 HOH HOH . H 3 HOH A 49 165 95 HOH HOH . H 3 HOH A 50 166 96 HOH HOH . H 3 HOH A 51 167 98 HOH HOH . H 3 HOH A 52 168 105 HOH HOH . H 3 HOH A 53 169 107 HOH HOH . H 3 HOH A 54 170 108 HOH HOH . H 3 HOH A 55 171 109 HOH HOH . H 3 HOH A 56 172 112 HOH HOH . I 3 HOH B 1 120 8 HOH HOH . I 3 HOH B 2 121 9 HOH HOH . I 3 HOH B 3 122 10 HOH HOH . I 3 HOH B 4 123 11 HOH HOH . I 3 HOH B 5 124 13 HOH HOH . I 3 HOH B 6 125 19 HOH HOH . I 3 HOH B 7 126 23 HOH HOH . I 3 HOH B 8 127 24 HOH HOH . I 3 HOH B 9 128 27 HOH HOH . I 3 HOH B 10 129 31 HOH HOH . I 3 HOH B 11 130 34 HOH HOH . I 3 HOH B 12 131 36 HOH HOH . I 3 HOH B 13 132 37 HOH HOH . I 3 HOH B 14 133 38 HOH HOH . I 3 HOH B 15 134 44 HOH HOH . I 3 HOH B 16 135 45 HOH HOH . I 3 HOH B 17 136 46 HOH HOH . I 3 HOH B 18 137 49 HOH HOH . I 3 HOH B 19 138 50 HOH HOH . I 3 HOH B 20 139 56 HOH HOH . I 3 HOH B 21 140 57 HOH HOH . I 3 HOH B 22 141 58 HOH HOH . I 3 HOH B 23 142 59 HOH HOH . I 3 HOH B 24 143 60 HOH HOH . I 3 HOH B 25 144 61 HOH HOH . I 3 HOH B 26 145 62 HOH HOH . I 3 HOH B 27 146 65 HOH HOH . I 3 HOH B 28 147 67 HOH HOH . I 3 HOH B 29 148 68 HOH HOH . I 3 HOH B 30 149 75 HOH HOH . I 3 HOH B 31 150 76 HOH HOH . I 3 HOH B 32 151 78 HOH HOH . I 3 HOH B 33 152 80 HOH HOH . I 3 HOH B 34 153 81 HOH HOH . I 3 HOH B 35 154 83 HOH HOH . I 3 HOH B 36 155 84 HOH HOH . I 3 HOH B 37 156 85 HOH HOH . I 3 HOH B 38 157 86 HOH HOH . I 3 HOH B 39 158 87 HOH HOH . I 3 HOH B 40 159 88 HOH HOH . I 3 HOH B 41 160 93 HOH HOH . I 3 HOH B 42 161 97 HOH HOH . I 3 HOH B 43 162 99 HOH HOH . I 3 HOH B 44 163 100 HOH HOH . I 3 HOH B 45 164 101 HOH HOH . I 3 HOH B 46 165 102 HOH HOH . I 3 HOH B 47 166 103 HOH HOH . I 3 HOH B 48 167 104 HOH HOH . I 3 HOH B 49 168 106 HOH HOH . I 3 HOH B 50 169 110 HOH HOH . I 3 HOH B 51 170 111 HOH HOH . I 3 HOH B 52 171 113 HOH HOH . I 3 HOH B 53 172 114 HOH HOH . I 3 HOH B 54 173 115 HOH HOH . I 3 HOH B 55 174 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 38.188 24.791 9.959 1 31.38 ? C1 EDO 118 B 1 HETATM 2 O O1 EDO . . . F 2 39.166 25.394 10.81 1 25.35 ? O1 EDO 118 B 1 HETATM 3 C C2 EDO . . . F 2 38.611 24.899 8.501 1 33.8 ? C2 EDO 118 B 1 HETATM 4 O O2 EDO . . . F 2 40.035 24.888 8.379 1 26.03 ? O2 EDO 118 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #