data_2PFZ # _model_server_result.job_id j6jSwmipl12VZYsTMGcZQQ _model_server_result.datetime_utc '2024-11-05 19:33:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2PFZ # _exptl.entry_id 2PFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 129.114 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROGLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PFZ _cell.length_a 108.39 _cell.length_b 108.39 _cell.length_c 63.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H7 N O3' _chem_comp.formula_weight 129.114 _chem_comp.id PCA _chem_comp.mon_nstd_flag n _chem_comp.name 'PYROGLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PCA sing 224 n n N CD PCA sing 225 n n N H PCA sing 226 n n CA CB PCA sing 227 n n CA C PCA sing 228 n n CA HA PCA sing 229 n n CB CG PCA sing 230 n n CB HB2 PCA sing 231 n n CB HB3 PCA sing 232 n n CG CD PCA sing 233 n n CG HG2 PCA sing 234 n n CG HG3 PCA sing 235 n n CD OE PCA doub 236 n n C O PCA doub 237 n n C OXT PCA sing 238 n n OXT HXT PCA sing 239 n n # _atom_sites.entry_id 2PFZ _atom_sites.fract_transf_matrix[1][1] 0.009226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009226 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PCA A 1 1 1 PCA PCA . C 3 HOH A 1 303 1 HOH HOH . C 3 HOH A 2 304 2 HOH HOH . C 3 HOH A 3 305 3 HOH HOH . C 3 HOH A 4 306 5 HOH HOH . C 3 HOH A 5 307 6 HOH HOH . C 3 HOH A 6 308 7 HOH HOH . C 3 HOH A 7 309 9 HOH HOH . C 3 HOH A 8 310 10 HOH HOH . C 3 HOH A 9 311 11 HOH HOH . C 3 HOH A 10 312 12 HOH HOH . C 3 HOH A 11 313 13 HOH HOH . C 3 HOH A 12 314 14 HOH HOH . C 3 HOH A 13 315 15 HOH HOH . C 3 HOH A 14 316 16 HOH HOH . C 3 HOH A 15 317 17 HOH HOH . C 3 HOH A 16 318 18 HOH HOH . C 3 HOH A 17 319 19 HOH HOH . C 3 HOH A 18 320 20 HOH HOH . C 3 HOH A 19 321 21 HOH HOH . C 3 HOH A 20 322 22 HOH HOH . C 3 HOH A 21 323 23 HOH HOH . C 3 HOH A 22 324 24 HOH HOH . C 3 HOH A 23 325 25 HOH HOH . C 3 HOH A 24 326 26 HOH HOH . C 3 HOH A 25 327 27 HOH HOH . C 3 HOH A 26 328 28 HOH HOH . C 3 HOH A 27 329 29 HOH HOH . C 3 HOH A 28 330 30 HOH HOH . C 3 HOH A 29 331 31 HOH HOH . C 3 HOH A 30 332 32 HOH HOH . C 3 HOH A 31 333 33 HOH HOH . C 3 HOH A 32 334 34 HOH HOH . C 3 HOH A 33 335 35 HOH HOH . C 3 HOH A 34 336 36 HOH HOH . C 3 HOH A 35 337 37 HOH HOH . C 3 HOH A 36 338 38 HOH HOH . C 3 HOH A 37 339 39 HOH HOH . C 3 HOH A 38 340 40 HOH HOH . C 3 HOH A 39 341 41 HOH HOH . C 3 HOH A 40 342 42 HOH HOH . C 3 HOH A 41 343 43 HOH HOH . C 3 HOH A 42 344 44 HOH HOH . C 3 HOH A 43 345 45 HOH HOH . C 3 HOH A 44 346 46 HOH HOH . C 3 HOH A 45 347 47 HOH HOH . C 3 HOH A 46 348 48 HOH HOH . C 3 HOH A 47 349 49 HOH HOH . C 3 HOH A 48 350 50 HOH HOH . C 3 HOH A 49 351 51 HOH HOH . C 3 HOH A 50 352 52 HOH HOH . C 3 HOH A 51 353 53 HOH HOH . C 3 HOH A 52 354 54 HOH HOH . C 3 HOH A 53 355 55 HOH HOH . C 3 HOH A 54 356 56 HOH HOH . C 3 HOH A 55 357 57 HOH HOH . C 3 HOH A 56 358 58 HOH HOH . C 3 HOH A 57 359 59 HOH HOH . C 3 HOH A 58 360 60 HOH HOH . C 3 HOH A 59 361 61 HOH HOH . C 3 HOH A 60 362 62 HOH HOH . C 3 HOH A 61 363 63 HOH HOH . C 3 HOH A 62 364 64 HOH HOH . C 3 HOH A 63 365 65 HOH HOH . C 3 HOH A 64 366 66 HOH HOH . C 3 HOH A 65 367 67 HOH HOH . C 3 HOH A 66 368 68 HOH HOH . C 3 HOH A 67 369 69 HOH HOH . C 3 HOH A 68 370 70 HOH HOH . C 3 HOH A 69 371 71 HOH HOH . C 3 HOH A 70 372 72 HOH HOH . C 3 HOH A 71 373 73 HOH HOH . C 3 HOH A 72 374 74 HOH HOH . C 3 HOH A 73 375 75 HOH HOH . C 3 HOH A 74 376 76 HOH HOH . C 3 HOH A 75 377 77 HOH HOH . C 3 HOH A 76 378 78 HOH HOH . C 3 HOH A 77 379 79 HOH HOH . C 3 HOH A 78 380 80 HOH HOH . C 3 HOH A 79 381 81 HOH HOH . C 3 HOH A 80 382 82 HOH HOH . C 3 HOH A 81 383 83 HOH HOH . C 3 HOH A 82 384 84 HOH HOH . C 3 HOH A 83 385 85 HOH HOH . C 3 HOH A 84 386 86 HOH HOH . C 3 HOH A 85 387 87 HOH HOH . C 3 HOH A 86 388 88 HOH HOH . C 3 HOH A 87 389 89 HOH HOH . C 3 HOH A 88 390 90 HOH HOH . C 3 HOH A 89 391 91 HOH HOH . C 3 HOH A 90 392 92 HOH HOH . C 3 HOH A 91 393 93 HOH HOH . C 3 HOH A 92 394 94 HOH HOH . C 3 HOH A 93 395 95 HOH HOH . C 3 HOH A 94 396 96 HOH HOH . C 3 HOH A 95 397 97 HOH HOH . C 3 HOH A 96 398 98 HOH HOH . C 3 HOH A 97 399 99 HOH HOH . C 3 HOH A 98 400 100 HOH HOH . C 3 HOH A 99 401 101 HOH HOH . C 3 HOH A 100 402 102 HOH HOH . C 3 HOH A 101 403 103 HOH HOH . C 3 HOH A 102 404 104 HOH HOH . C 3 HOH A 103 405 105 HOH HOH . C 3 HOH A 104 406 106 HOH HOH . C 3 HOH A 105 407 107 HOH HOH . C 3 HOH A 106 408 108 HOH HOH . C 3 HOH A 107 409 109 HOH HOH . C 3 HOH A 108 410 110 HOH HOH . C 3 HOH A 109 411 111 HOH HOH . C 3 HOH A 110 412 112 HOH HOH . C 3 HOH A 111 413 113 HOH HOH . C 3 HOH A 112 414 114 HOH HOH . C 3 HOH A 113 415 115 HOH HOH . C 3 HOH A 114 416 116 HOH HOH . C 3 HOH A 115 417 117 HOH HOH . C 3 HOH A 116 418 118 HOH HOH . C 3 HOH A 117 419 119 HOH HOH . C 3 HOH A 118 420 120 HOH HOH . C 3 HOH A 119 421 121 HOH HOH . C 3 HOH A 120 422 122 HOH HOH . C 3 HOH A 121 423 123 HOH HOH . C 3 HOH A 122 424 124 HOH HOH . C 3 HOH A 123 425 125 HOH HOH . C 3 HOH A 124 426 126 HOH HOH . C 3 HOH A 125 427 127 HOH HOH . C 3 HOH A 126 428 128 HOH HOH . C 3 HOH A 127 429 129 HOH HOH . C 3 HOH A 128 430 130 HOH HOH . C 3 HOH A 129 431 131 HOH HOH . C 3 HOH A 130 432 132 HOH HOH . C 3 HOH A 131 433 133 HOH HOH . C 3 HOH A 132 434 134 HOH HOH . C 3 HOH A 133 435 135 HOH HOH . C 3 HOH A 134 436 136 HOH HOH . C 3 HOH A 135 437 137 HOH HOH . C 3 HOH A 136 438 138 HOH HOH . C 3 HOH A 137 439 139 HOH HOH . C 3 HOH A 138 440 140 HOH HOH . C 3 HOH A 139 441 141 HOH HOH . C 3 HOH A 140 442 142 HOH HOH . C 3 HOH A 141 443 143 HOH HOH . C 3 HOH A 142 444 144 HOH HOH . C 3 HOH A 143 445 145 HOH HOH . C 3 HOH A 144 446 146 HOH HOH . C 3 HOH A 145 447 147 HOH HOH . C 3 HOH A 146 448 148 HOH HOH . C 3 HOH A 147 449 149 HOH HOH . C 3 HOH A 148 450 150 HOH HOH . C 3 HOH A 149 451 151 HOH HOH . C 3 HOH A 150 452 152 HOH HOH . C 3 HOH A 151 453 153 HOH HOH . C 3 HOH A 152 454 154 HOH HOH . C 3 HOH A 153 455 156 HOH HOH . C 3 HOH A 154 456 157 HOH HOH . C 3 HOH A 155 457 158 HOH HOH . C 3 HOH A 156 458 159 HOH HOH . C 3 HOH A 157 459 160 HOH HOH . C 3 HOH A 158 460 161 HOH HOH . C 3 HOH A 159 461 162 HOH HOH . C 3 HOH A 160 462 163 HOH HOH . C 3 HOH A 161 463 164 HOH HOH . C 3 HOH A 162 464 165 HOH HOH . C 3 HOH A 163 465 166 HOH HOH . C 3 HOH A 164 466 167 HOH HOH . C 3 HOH A 165 467 168 HOH HOH . C 3 HOH A 166 468 169 HOH HOH . C 3 HOH A 167 469 170 HOH HOH . C 3 HOH A 168 470 171 HOH HOH . C 3 HOH A 169 471 172 HOH HOH . C 3 HOH A 170 472 173 HOH HOH . C 3 HOH A 171 473 174 HOH HOH . C 3 HOH A 172 474 175 HOH HOH . C 3 HOH A 173 475 176 HOH HOH . C 3 HOH A 174 476 177 HOH HOH . C 3 HOH A 175 477 178 HOH HOH . C 3 HOH A 176 478 179 HOH HOH . C 3 HOH A 177 479 180 HOH HOH . C 3 HOH A 178 480 181 HOH HOH . C 3 HOH A 179 481 182 HOH HOH . C 3 HOH A 180 482 183 HOH HOH . C 3 HOH A 181 483 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PCA . . . B 2 31.945 62.946 2.556 1 15.94 ? N PCA 1 A 1 HETATM 2 C CA PCA . . . B 2 30.814 62.724 1.634 1 16.87 ? CA PCA 1 A 1 HETATM 3 C CB PCA . . . B 2 29.74 63.797 1.816 1 16.52 ? CB PCA 1 A 1 HETATM 4 C CG PCA . . . B 2 30.266 64.745 2.877 1 15.73 ? CG PCA 1 A 1 HETATM 5 C CD PCA . . . B 2 31.564 64.123 3.302 1 15.83 ? CD PCA 1 A 1 HETATM 6 O OE PCA . . . B 2 32.245 64.552 4.246 1 15.77 ? OE PCA 1 A 1 HETATM 7 C C PCA . . . B 2 31.362 62.861 0.232 1 17.64 ? C PCA 1 A 1 HETATM 8 O O PCA . . . B 2 30.751 62.424 -0.752 1 17.85 ? O PCA 1 A 1 HETATM 9 O OXT PCA . . . B 2 32.455 63.43 0.079 1 17.91 ? OXT PCA 1 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #