data_2PG4 # _model_server_result.job_id YjwuSb7JxH1I9FdNbkaJRQ _model_server_result.datetime_utc '2024-11-05 01:21:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pg4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":97}' # _entry.id 2PG4 # _exptl.entry_id 2PG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PG4 _cell.length_a 109.84 _cell.length_b 109.84 _cell.length_c 36.76 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 3 1,3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 4 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 109.84 109.84 36.76 3 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 36.76 4 'crystal symmetry operation' 8_667 -y+1,-x+1,-z+2 0 -1 0 -1 0 0 0 0 -1 109.84 109.84 73.52 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 2 A MSE 1 1_555 A N ASP 3 A ASP 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N ASP 3 A ASP 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C PHE 48 A PHE 47 1_555 A N MSE 49 A MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 49 A MSE 48 1_555 A N GLY 50 A GLY 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C PHE 48 B PHE 47 1_555 B N MSE 49 B MSE 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale6 B C MSE 49 B MSE 48 1_555 B N GLY 50 B GLY 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 87 n n C1 C2 EDO sing 88 n n C1 H11 EDO sing 89 n n C1 H12 EDO sing 90 n n O1 HO1 EDO sing 91 n n C2 O2 EDO sing 92 n n C2 H21 EDO sing 93 n n C2 H22 EDO sing 94 n n O2 HO2 EDO sing 95 n n # _atom_sites.entry_id 2PG4 _atom_sites.fract_transf_matrix[1][1] 0.0091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 95 2 CL CL . D 3 EDO A 1 96 5 EDO EDO . E 3 EDO A 1 97 6 EDO EDO . F 3 EDO A 1 98 7 EDO EDO . G 3 EDO A 1 99 8 EDO EDO . H 3 EDO A 1 100 10 EDO EDO . I 2 CL B 1 95 1 CL CL . J 2 CL B 1 96 3 CL CL . K 4 CIT B 1 97 4 CIT CIT . L 3 EDO B 1 98 9 EDO EDO . M 3 EDO B 1 99 11 EDO EDO . N 5 PEG B 1 100 12 PEG PEG . O 6 HOH A 1 101 15 HOH HOH . O 6 HOH A 2 102 18 HOH HOH . O 6 HOH A 3 103 22 HOH HOH . O 6 HOH A 4 104 24 HOH HOH . O 6 HOH A 5 105 26 HOH HOH . O 6 HOH A 6 106 27 HOH HOH . O 6 HOH A 7 107 28 HOH HOH . O 6 HOH A 8 108 30 HOH HOH . O 6 HOH A 9 109 31 HOH HOH . O 6 HOH A 10 110 32 HOH HOH . O 6 HOH A 11 111 33 HOH HOH . O 6 HOH A 12 112 34 HOH HOH . O 6 HOH A 13 113 39 HOH HOH . O 6 HOH A 14 114 40 HOH HOH . P 6 HOH B 1 101 13 HOH HOH . P 6 HOH B 2 102 14 HOH HOH . P 6 HOH B 3 103 16 HOH HOH . P 6 HOH B 4 104 17 HOH HOH . P 6 HOH B 5 105 19 HOH HOH . P 6 HOH B 6 106 20 HOH HOH . P 6 HOH B 7 107 21 HOH HOH . P 6 HOH B 8 108 23 HOH HOH . P 6 HOH B 9 109 25 HOH HOH . P 6 HOH B 10 110 29 HOH HOH . P 6 HOH B 11 111 35 HOH HOH . P 6 HOH B 12 112 36 HOH HOH . P 6 HOH B 13 113 37 HOH HOH . P 6 HOH B 14 114 38 HOH HOH . P 6 HOH B 15 115 41 HOH HOH . P 6 HOH B 16 116 42 HOH HOH . P 6 HOH B 17 117 43 HOH HOH . P 6 HOH B 18 118 44 HOH HOH . P 6 HOH B 19 119 45 HOH HOH . P 6 HOH B 20 120 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 33.676 33.591 10.497 1 60.36 ? C1 EDO 97 A 1 HETATM 2 O O1 EDO . . . E 3 33.513 35 10.26 1 64.12 ? O1 EDO 97 A 1 HETATM 3 C C2 EDO . . . E 3 33.855 33.299 11.979 1 62.82 ? C2 EDO 97 A 1 HETATM 4 O O2 EDO . . . E 3 35.014 34.007 12.45 1 56.13 ? O2 EDO 97 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #