data_2PG7 # _model_server_result.job_id pwTAGEDgmfPjEiw0I9VKog _model_server_result.datetime_utc '2024-11-28 22:50:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2PG7 # _exptl.entry_id 2PG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.92 _cell.angle_gamma 90 _cell.entry_id 2PG7 _cell.length_a 70.889 _cell.length_b 159.389 _cell.length_c 104.101 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 G FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 H FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2PG7 _atom_sites.fract_transf_matrix[1][1] 0.014107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000473 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 500 500 HEM HEM . F 2 HEM B 1 500 500 HEM HEM . G 2 HEM C 1 500 500 HEM HEM . H 2 HEM D 1 500 500 HEM HEM . I 3 HOH A 1 501 1 HOH HOH . I 3 HOH A 2 502 4 HOH HOH . I 3 HOH A 3 503 13 HOH HOH . I 3 HOH A 4 504 19 HOH HOH . I 3 HOH A 5 505 24 HOH HOH . I 3 HOH A 6 506 34 HOH HOH . I 3 HOH A 7 507 36 HOH HOH . I 3 HOH A 8 508 37 HOH HOH . I 3 HOH A 9 509 41 HOH HOH . I 3 HOH A 10 510 43 HOH HOH . I 3 HOH A 11 511 44 HOH HOH . I 3 HOH A 12 512 45 HOH HOH . I 3 HOH A 13 513 50 HOH HOH . I 3 HOH A 14 514 51 HOH HOH . I 3 HOH A 15 515 56 HOH HOH . I 3 HOH A 16 516 59 HOH HOH . I 3 HOH A 17 517 68 HOH HOH . I 3 HOH A 18 518 75 HOH HOH . I 3 HOH A 19 519 88 HOH HOH . I 3 HOH A 20 520 89 HOH HOH . J 3 HOH B 1 501 8 HOH HOH . J 3 HOH B 2 502 9 HOH HOH . J 3 HOH B 3 503 12 HOH HOH . J 3 HOH B 4 504 14 HOH HOH . J 3 HOH B 5 505 15 HOH HOH . J 3 HOH B 6 506 16 HOH HOH . J 3 HOH B 7 507 17 HOH HOH . J 3 HOH B 8 508 20 HOH HOH . J 3 HOH B 9 509 21 HOH HOH . J 3 HOH B 10 510 23 HOH HOH . J 3 HOH B 11 511 31 HOH HOH . J 3 HOH B 12 512 32 HOH HOH . J 3 HOH B 13 513 33 HOH HOH . J 3 HOH B 14 514 52 HOH HOH . J 3 HOH B 15 515 58 HOH HOH . J 3 HOH B 16 516 61 HOH HOH . J 3 HOH B 17 517 70 HOH HOH . J 3 HOH B 18 518 73 HOH HOH . J 3 HOH B 19 519 74 HOH HOH . J 3 HOH B 20 520 83 HOH HOH . J 3 HOH B 21 521 86 HOH HOH . J 3 HOH B 22 522 87 HOH HOH . J 3 HOH B 23 523 91 HOH HOH . K 3 HOH C 1 501 2 HOH HOH . K 3 HOH C 2 502 5 HOH HOH . K 3 HOH C 3 503 7 HOH HOH . K 3 HOH C 4 504 10 HOH HOH . K 3 HOH C 5 505 18 HOH HOH . K 3 HOH C 6 506 26 HOH HOH . K 3 HOH C 7 507 30 HOH HOH . K 3 HOH C 8 508 35 HOH HOH . K 3 HOH C 9 509 38 HOH HOH . K 3 HOH C 10 510 39 HOH HOH . K 3 HOH C 11 511 40 HOH HOH . K 3 HOH C 12 512 42 HOH HOH . K 3 HOH C 13 513 57 HOH HOH . K 3 HOH C 14 514 60 HOH HOH . K 3 HOH C 15 515 62 HOH HOH . K 3 HOH C 16 516 63 HOH HOH . K 3 HOH C 17 517 64 HOH HOH . K 3 HOH C 18 518 65 HOH HOH . K 3 HOH C 19 519 66 HOH HOH . K 3 HOH C 20 520 71 HOH HOH . K 3 HOH C 21 521 76 HOH HOH . K 3 HOH C 22 522 78 HOH HOH . K 3 HOH C 23 523 82 HOH HOH . K 3 HOH C 24 524 84 HOH HOH . K 3 HOH C 25 525 90 HOH HOH . L 3 HOH D 1 501 3 HOH HOH . L 3 HOH D 2 502 6 HOH HOH . L 3 HOH D 3 503 11 HOH HOH . L 3 HOH D 4 504 22 HOH HOH . L 3 HOH D 5 505 25 HOH HOH . L 3 HOH D 6 506 27 HOH HOH . L 3 HOH D 7 507 28 HOH HOH . L 3 HOH D 8 508 29 HOH HOH . L 3 HOH D 9 509 46 HOH HOH . L 3 HOH D 10 510 47 HOH HOH . L 3 HOH D 11 511 48 HOH HOH . L 3 HOH D 12 512 49 HOH HOH . L 3 HOH D 13 513 53 HOH HOH . L 3 HOH D 14 514 54 HOH HOH . L 3 HOH D 15 515 55 HOH HOH . L 3 HOH D 16 516 67 HOH HOH . L 3 HOH D 17 517 69 HOH HOH . L 3 HOH D 18 518 72 HOH HOH . L 3 HOH D 19 519 77 HOH HOH . L 3 HOH D 20 520 79 HOH HOH . L 3 HOH D 21 521 80 HOH HOH . L 3 HOH D 22 522 81 HOH HOH . L 3 HOH D 23 523 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 2 52.633 83.429 60.425 1 48.98 ? CHA HEM 500 A 1 HETATM 2 C CHB HEM . . . E 2 49.913 81.289 57.245 1 48.98 ? CHB HEM 500 A 1 HETATM 3 C CHC HEM . . . E 2 52.825 82.529 53.84 1 48.98 ? CHC HEM 500 A 1 HETATM 4 C CHD HEM . . . E 2 55.771 84.237 57.055 1 48.98 ? CHD HEM 500 A 1 HETATM 5 C C1A HEM . . . E 2 51.503 82.863 59.871 1 48.98 ? C1A HEM 500 A 1 HETATM 6 C C2A HEM . . . E 2 50.32 82.523 60.533 1 48.98 ? C2A HEM 500 A 1 HETATM 7 C C3A HEM . . . E 2 49.564 81.856 59.586 1 48.98 ? C3A HEM 500 A 1 HETATM 8 C C4A HEM . . . E 2 50.318 81.831 58.43 1 48.98 ? C4A HEM 500 A 1 HETATM 9 C CMA HEM . . . E 2 48.129 81.23 59.733 1 48.98 ? CMA HEM 500 A 1 HETATM 10 C CAA HEM . . . E 2 49.966 82.841 62.001 1 48.98 ? CAA HEM 500 A 1 HETATM 11 C CBA HEM . . . E 2 49.263 84.144 62.242 1 48.98 ? CBA HEM 500 A 1 HETATM 12 C CGA HEM . . . E 2 48.886 84.433 63.686 1 48.98 ? CGA HEM 500 A 1 HETATM 13 O O1A HEM . . . E 2 47.78 84.136 64.106 1 48.98 ? O1A HEM 500 A 1 HETATM 14 O O2A HEM . . . E 2 49.652 84.964 64.436 1 48.98 ? O2A HEM 500 A 1 HETATM 15 C C1B HEM . . . E 2 50.319 81.516 55.957 1 48.98 ? C1B HEM 500 A 1 HETATM 16 C C2B HEM . . . E 2 49.691 81.054 54.772 1 48.98 ? C2B HEM 500 A 1 HETATM 17 C C3B HEM . . . E 2 50.603 81.388 53.742 1 48.98 ? C3B HEM 500 A 1 HETATM 18 C C4B HEM . . . E 2 51.687 82.018 54.427 1 48.98 ? C4B HEM 500 A 1 HETATM 19 C CMB HEM . . . E 2 48.338 80.362 54.708 1 48.98 ? CMB HEM 500 A 1 HETATM 20 C CAB HEM . . . E 2 50.533 81.175 52.32 1 48.98 ? CAB HEM 500 A 1 HETATM 21 C CBB HEM . . . E 2 49.395 80.898 51.404 1 48.98 ? CBB HEM 500 A 1 HETATM 22 C C1C HEM . . . E 2 53.919 83.175 54.366 1 48.98 ? C1C HEM 500 A 1 HETATM 23 C C2C HEM . . . E 2 55.004 83.578 53.635 1 48.98 ? C2C HEM 500 A 1 HETATM 24 C C3C HEM . . . E 2 55.992 83.927 54.56 1 48.98 ? C3C HEM 500 A 1 HETATM 25 C C4C HEM . . . E 2 55.393 83.701 55.829 1 48.98 ? C4C HEM 500 A 1 HETATM 26 C CMC HEM . . . E 2 55.101 83.626 52.082 1 48.98 ? CMC HEM 500 A 1 HETATM 27 C CAC HEM . . . E 2 57.269 84.392 54.397 1 48.98 ? CAC HEM 500 A 1 HETATM 28 C CBC HEM . . . E 2 57.72 85.649 53.928 1 48.98 ? CBC HEM 500 A 1 HETATM 29 C C1D HEM . . . E 2 55.223 84.08 58.284 1 48.98 ? C1D HEM 500 A 1 HETATM 30 C C2D HEM . . . E 2 55.821 84.477 59.479 1 48.98 ? C2D HEM 500 A 1 HETATM 31 C C3D HEM . . . E 2 54.886 84.384 60.465 1 48.98 ? C3D HEM 500 A 1 HETATM 32 C C4D HEM . . . E 2 53.745 83.921 59.797 1 48.98 ? C4D HEM 500 A 1 HETATM 33 C CMD HEM . . . E 2 57.268 84.932 59.66 1 48.98 ? CMD HEM 500 A 1 HETATM 34 C CAD HEM . . . E 2 55.051 84.715 61.993 1 48.98 ? CAD HEM 500 A 1 HETATM 35 C CBD HEM . . . E 2 54.709 86.201 62.355 1 48.98 ? CBD HEM 500 A 1 HETATM 36 C CGD HEM . . . E 2 54.856 86.663 63.831 1 48.98 ? CGD HEM 500 A 1 HETATM 37 O O1D HEM . . . E 2 54.779 87.836 64.114 1 48.98 ? O1D HEM 500 A 1 HETATM 38 O O2D HEM . . . E 2 55.07 85.825 64.731 1 48.98 ? O2D HEM 500 A 1 HETATM 39 N NA HEM . . . E 2 51.459 82.42 58.584 1 48.98 ? NA HEM 500 A 1 HETATM 40 N NB HEM . . . E 2 51.48 82.07 55.712 1 48.98 ? NB HEM 500 A 1 HETATM 41 N NC HEM . . . E 2 54.149 83.248 55.656 1 48.98 ? NC HEM 500 A 1 HETATM 42 N ND HEM . . . E 2 54.005 83.757 58.495 1 48.98 ? ND HEM 500 A 1 HETATM 43 FE FE HEM . . . E 2 52.781 82.873 57.1 1 48.98 ? FE HEM 500 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #