data_2PG7
#
_model_server_result.job_id            sVJeMU7zL1OUf8hpeiS_ZA 
_model_server_result.datetime_utc      '2024-12-01 10:16:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":500}' 
#
_entry.id    2PG7 
#
_exptl.entry_id    2PG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.92 
_cell.angle_gamma         90 
_cell.entry_id            2PG7 
_cell.length_a            70.889 
_cell.length_b            159.389 
_cell.length_c            104.101 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 439 1_555 E FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc2 B SG CYS 417 B CYS 439 1_555 F FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 C SG CYS 417 C CYS 439 1_555 G FE HEM . C HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc4 D SG CYS 417 D CYS 439 1_555 H FE HEM . D HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     2PG7 
_atom_sites.fract_transf_matrix[1][1]    0.014107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000473 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006274 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 500 500 HEM HEM . 
F 2 HEM B 1 500 500 HEM HEM . 
G 2 HEM C 1 500 500 HEM HEM . 
H 2 HEM D 1 500 500 HEM HEM . 
I 3 HOH A 1 501 1 HOH HOH . 
I 3 HOH A 2 502 4 HOH HOH . 
I 3 HOH A 3 503 13 HOH HOH . 
I 3 HOH A 4 504 19 HOH HOH . 
I 3 HOH A 5 505 24 HOH HOH . 
I 3 HOH A 6 506 34 HOH HOH . 
I 3 HOH A 7 507 36 HOH HOH . 
I 3 HOH A 8 508 37 HOH HOH . 
I 3 HOH A 9 509 41 HOH HOH . 
I 3 HOH A 10 510 43 HOH HOH . 
I 3 HOH A 11 511 44 HOH HOH . 
I 3 HOH A 12 512 45 HOH HOH . 
I 3 HOH A 13 513 50 HOH HOH . 
I 3 HOH A 14 514 51 HOH HOH . 
I 3 HOH A 15 515 56 HOH HOH . 
I 3 HOH A 16 516 59 HOH HOH . 
I 3 HOH A 17 517 68 HOH HOH . 
I 3 HOH A 18 518 75 HOH HOH . 
I 3 HOH A 19 519 88 HOH HOH . 
I 3 HOH A 20 520 89 HOH HOH . 
J 3 HOH B 1 501 8 HOH HOH . 
J 3 HOH B 2 502 9 HOH HOH . 
J 3 HOH B 3 503 12 HOH HOH . 
J 3 HOH B 4 504 14 HOH HOH . 
J 3 HOH B 5 505 15 HOH HOH . 
J 3 HOH B 6 506 16 HOH HOH . 
J 3 HOH B 7 507 17 HOH HOH . 
J 3 HOH B 8 508 20 HOH HOH . 
J 3 HOH B 9 509 21 HOH HOH . 
J 3 HOH B 10 510 23 HOH HOH . 
J 3 HOH B 11 511 31 HOH HOH . 
J 3 HOH B 12 512 32 HOH HOH . 
J 3 HOH B 13 513 33 HOH HOH . 
J 3 HOH B 14 514 52 HOH HOH . 
J 3 HOH B 15 515 58 HOH HOH . 
J 3 HOH B 16 516 61 HOH HOH . 
J 3 HOH B 17 517 70 HOH HOH . 
J 3 HOH B 18 518 73 HOH HOH . 
J 3 HOH B 19 519 74 HOH HOH . 
J 3 HOH B 20 520 83 HOH HOH . 
J 3 HOH B 21 521 86 HOH HOH . 
J 3 HOH B 22 522 87 HOH HOH . 
J 3 HOH B 23 523 91 HOH HOH . 
K 3 HOH C 1 501 2 HOH HOH . 
K 3 HOH C 2 502 5 HOH HOH . 
K 3 HOH C 3 503 7 HOH HOH . 
K 3 HOH C 4 504 10 HOH HOH . 
K 3 HOH C 5 505 18 HOH HOH . 
K 3 HOH C 6 506 26 HOH HOH . 
K 3 HOH C 7 507 30 HOH HOH . 
K 3 HOH C 8 508 35 HOH HOH . 
K 3 HOH C 9 509 38 HOH HOH . 
K 3 HOH C 10 510 39 HOH HOH . 
K 3 HOH C 11 511 40 HOH HOH . 
K 3 HOH C 12 512 42 HOH HOH . 
K 3 HOH C 13 513 57 HOH HOH . 
K 3 HOH C 14 514 60 HOH HOH . 
K 3 HOH C 15 515 62 HOH HOH . 
K 3 HOH C 16 516 63 HOH HOH . 
K 3 HOH C 17 517 64 HOH HOH . 
K 3 HOH C 18 518 65 HOH HOH . 
K 3 HOH C 19 519 66 HOH HOH . 
K 3 HOH C 20 520 71 HOH HOH . 
K 3 HOH C 21 521 76 HOH HOH . 
K 3 HOH C 22 522 78 HOH HOH . 
K 3 HOH C 23 523 82 HOH HOH . 
K 3 HOH C 24 524 84 HOH HOH . 
K 3 HOH C 25 525 90 HOH HOH . 
L 3 HOH D 1 501 3 HOH HOH . 
L 3 HOH D 2 502 6 HOH HOH . 
L 3 HOH D 3 503 11 HOH HOH . 
L 3 HOH D 4 504 22 HOH HOH . 
L 3 HOH D 5 505 25 HOH HOH . 
L 3 HOH D 6 506 27 HOH HOH . 
L 3 HOH D 7 507 28 HOH HOH . 
L 3 HOH D 8 508 29 HOH HOH . 
L 3 HOH D 9 509 46 HOH HOH . 
L 3 HOH D 10 510 47 HOH HOH . 
L 3 HOH D 11 511 48 HOH HOH . 
L 3 HOH D 12 512 49 HOH HOH . 
L 3 HOH D 13 513 53 HOH HOH . 
L 3 HOH D 14 514 54 HOH HOH . 
L 3 HOH D 15 515 55 HOH HOH . 
L 3 HOH D 16 516 67 HOH HOH . 
L 3 HOH D 17 517 69 HOH HOH . 
L 3 HOH D 18 518 72 HOH HOH . 
L 3 HOH D 19 519 77 HOH HOH . 
L 3 HOH D 20 520 79 HOH HOH . 
L 3 HOH D 21 521 80 HOH HOH . 
L 3 HOH D 22 522 81 HOH HOH . 
L 3 HOH D 23 523 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 2 73.079 78.043 99.595 1 48.98 ? CHA HEM 500 D 1 
HETATM 2 C CHB HEM . . . H 2 74.059 75.136 103.164 1 48.98 ? CHB HEM 500 D 1 
HETATM 3 C CHC HEM . . . H 2 72.739 78.355 106.245 1 48.98 ? CHC HEM 500 D 1 
HETATM 4 C CHD HEM . . . H 2 71.361 81.089 102.687 1 48.98 ? CHD HEM 500 D 1 
HETATM 5 C C1A HEM . . . H 2 73.486 76.891 100.25 1 48.98 ? C1A HEM 500 D 1 
HETATM 6 C C2A HEM . . . H 2 74.126 75.774 99.685 1 48.98 ? C2A HEM 500 D 1 
HETATM 7 C C3A HEM . . . H 2 74.364 74.924 100.75 1 48.98 ? C3A HEM 500 D 1 
HETATM 8 C C4A HEM . . . H 2 73.868 75.559 101.883 1 48.98 ? C4A HEM 500 D 1 
HETATM 9 C CMA HEM . . . H 2 75.061 73.507 100.729 1 48.98 ? CMA HEM 500 D 1 
HETATM 10 C CAA HEM . . . H 2 74.481 75.558 98.199 1 48.98 ? CAA HEM 500 D 1 
HETATM 11 C CBA HEM . . . H 2 75.835 76.051 97.775 1 48.98 ? CBA HEM 500 D 1 
HETATM 12 C CGA HEM . . . H 2 76.202 75.795 96.318 1 48.98 ? CGA HEM 500 D 1 
HETATM 13 O O1A HEM . . . H 2 76.866 74.811 96.02 1 48.98 ? O1A HEM 500 D 1 
HETATM 14 O O2A HEM . . . H 2 75.867 76.549 95.436 1 48.98 ? O2A HEM 500 D 1 
HETATM 15 C C1B HEM . . . H 2 73.508 75.565 104.346 1 48.98 ? C1B HEM 500 D 1 
HETATM 16 C C2B HEM . . . H 2 73.638 74.919 105.604 1 48.98 ? C2B HEM 500 D 1 
HETATM 17 C C3B HEM . . . H 2 73.377 75.944 106.559 1 48.98 ? C3B HEM 500 D 1 
HETATM 18 C C4B HEM . . . H 2 73.114 77.105 105.768 1 48.98 ? C4B HEM 500 D 1 
HETATM 19 C CMB HEM . . . H 2 73.983 73.451 105.792 1 48.98 ? CMB HEM 500 D 1 
HETATM 20 C CAB HEM . . . H 2 73.36 75.893 107.986 1 48.98 ? CAB HEM 500 D 1 
HETATM 21 C CBB HEM . . . H 2 73.974 74.938 108.945 1 48.98 ? CBB HEM 500 D 1 
HETATM 22 C C1C HEM . . . H 2 72.372 79.517 105.586 1 48.98 ? C1C HEM 500 D 1 
HETATM 23 C C2C HEM . . . H 2 71.916 80.667 106.197 1 48.98 ? C2C HEM 500 D 1 
HETATM 24 C C3C HEM . . . H 2 71.424 81.483 105.164 1 48.98 ? C3C HEM 500 D 1 
HETATM 25 C C4C HEM . . . H 2 71.63 80.735 103.99 1 48.98 ? C4C HEM 500 D 1 
HETATM 26 C CMC HEM . . . H 2 71.949 80.981 107.723 1 48.98 ? CMC HEM 500 D 1 
HETATM 27 C CAC HEM . . . H 2 70.858 82.72 105.163 1 48.98 ? CAC HEM 500 D 1 
HETATM 28 C CBC HEM . . . H 2 71.454 83.971 105.433 1 48.98 ? CBC HEM 500 D 1 
HETATM 29 C C1D HEM . . . H 2 71.884 80.609 101.543 1 48.98 ? C1D HEM 500 D 1 
HETATM 30 C C2D HEM . . . H 2 71.783 81.227 100.297 1 48.98 ? C2D HEM 500 D 1 
HETATM 31 C C3D HEM . . . H 2 72.286 80.358 99.366 1 48.98 ? C3D HEM 500 D 1 
HETATM 32 C C4D HEM . . . H 2 72.669 79.241 100.124 1 48.98 ? C4D HEM 500 D 1 
HETATM 33 C CMD HEM . . . H 2 71.208 82.619 100.015 1 48.98 ? CMD HEM 500 D 1 
HETATM 34 C CAD HEM . . . H 2 72.406 80.543 97.809 1 48.98 ? CAD HEM 500 D 1 
HETATM 35 C CBD HEM . . . H 2 73.734 81.176 97.305 1 48.98 ? CBD HEM 500 D 1 
HETATM 36 C CGD HEM . . . H 2 73.879 81.372 95.773 1 48.98 ? CGD HEM 500 D 1 
HETATM 37 O O1D HEM . . . H 2 74.828 81.953 95.307 1 48.98 ? O1D HEM 500 D 1 
HETATM 38 O O2D HEM . . . H 2 73.007 80.922 95.012 1 48.98 ? O2D HEM 500 D 1 
HETATM 39 N NA HEM . . . H 2 73.349 76.718 101.603 1 48.98 ? NA HEM 500 D 1 
HETATM 40 N NB HEM . . . H 2 73.2 76.835 104.489 1 48.98 ? NB HEM 500 D 1 
HETATM 41 N NC HEM . . . H 2 72.199 79.567 104.282 1 48.98 ? NC HEM 500 D 1 
HETATM 42 N ND HEM . . . H 2 72.406 79.446 101.418 1 48.98 ? ND HEM 500 D 1 
HETATM 43 FE FE HEM . . . H 2 72.746 78.129 102.97 1 48.98 ? FE HEM 500 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#