data_2PGB # _model_server_result.job_id 4uaVi0rWuAtuPuOAK8b0lw _model_server_result.datetime_utc '2024-12-27 01:21:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 2PGB # _exptl.entry_id 2PGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PGB _cell.length_a 61.412 _cell.length_b 96.597 _cell.length_c 48.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 320 n n S O2 SO4 doub 321 n n S O3 SO4 sing 322 n n S O4 SO4 sing 323 n n # _atom_sites.entry_id 2PGB _atom_sites.fract_transf_matrix[1][1] 0.016283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG B 1 600 600 NAG NAG . D 4 SO4 B 1 303 303 SO4 SO4 . E 4 SO4 B 1 304 304 SO4 SO4 . F 5 HOH A 1 541 541 HOH HOH . F 5 HOH A 2 547 547 HOH HOH . F 5 HOH A 3 600 600 HOH HOH . F 5 HOH A 4 602 602 HOH HOH . F 5 HOH A 5 603 603 HOH HOH . F 5 HOH A 6 606 606 HOH HOH . F 5 HOH A 7 614 614 HOH HOH . F 5 HOH A 8 616 616 HOH HOH . F 5 HOH A 9 617 617 HOH HOH . F 5 HOH A 10 618 618 HOH HOH . F 5 HOH A 11 620 620 HOH HOH . F 5 HOH A 12 621 621 HOH HOH . F 5 HOH A 13 627 627 HOH HOH . F 5 HOH A 14 628 628 HOH HOH . F 5 HOH A 15 629 629 HOH HOH . F 5 HOH A 16 630 630 HOH HOH . F 5 HOH A 17 632 632 HOH HOH . F 5 HOH A 18 642 642 HOH HOH . F 5 HOH A 19 643 643 HOH HOH . F 5 HOH A 20 646 646 HOH HOH . F 5 HOH A 21 677 677 HOH HOH . F 5 HOH A 22 680 680 HOH HOH . F 5 HOH A 23 682 682 HOH HOH . F 5 HOH A 24 689 689 HOH HOH . F 5 HOH A 25 690 690 HOH HOH . F 5 HOH A 26 704 704 HOH HOH . F 5 HOH A 27 705 705 HOH HOH . F 5 HOH A 28 706 706 HOH HOH . F 5 HOH A 29 707 707 HOH HOH . F 5 HOH A 30 712 712 HOH HOH . F 5 HOH A 31 713 713 HOH HOH . F 5 HOH A 32 727 727 HOH HOH . F 5 HOH A 33 728 728 HOH HOH . F 5 HOH A 34 729 729 HOH HOH . F 5 HOH A 35 730 730 HOH HOH . F 5 HOH A 36 731 731 HOH HOH . F 5 HOH A 37 732 732 HOH HOH . F 5 HOH A 38 745 745 HOH HOH . F 5 HOH A 39 746 746 HOH HOH . F 5 HOH A 40 747 747 HOH HOH . F 5 HOH A 41 748 748 HOH HOH . G 5 HOH B 1 500 500 HOH HOH . G 5 HOH B 2 501 501 HOH HOH . G 5 HOH B 3 502 502 HOH HOH . G 5 HOH B 4 503 503 HOH HOH . G 5 HOH B 5 504 504 HOH HOH . G 5 HOH B 6 505 505 HOH HOH . G 5 HOH B 7 506 506 HOH HOH . G 5 HOH B 8 507 507 HOH HOH . G 5 HOH B 9 508 508 HOH HOH . G 5 HOH B 10 509 509 HOH HOH . G 5 HOH B 11 510 510 HOH HOH . G 5 HOH B 12 511 511 HOH HOH . G 5 HOH B 13 512 512 HOH HOH . G 5 HOH B 14 513 513 HOH HOH . G 5 HOH B 15 514 514 HOH HOH . G 5 HOH B 16 515 515 HOH HOH . G 5 HOH B 17 516 516 HOH HOH . G 5 HOH B 18 517 517 HOH HOH . G 5 HOH B 19 518 518 HOH HOH . G 5 HOH B 20 519 519 HOH HOH . G 5 HOH B 21 520 520 HOH HOH . G 5 HOH B 22 521 521 HOH HOH . G 5 HOH B 23 522 522 HOH HOH . G 5 HOH B 24 523 523 HOH HOH . G 5 HOH B 25 524 524 HOH HOH . G 5 HOH B 26 525 525 HOH HOH . G 5 HOH B 27 526 526 HOH HOH . G 5 HOH B 28 527 527 HOH HOH . G 5 HOH B 29 528 528 HOH HOH . G 5 HOH B 30 529 529 HOH HOH . G 5 HOH B 31 530 530 HOH HOH . G 5 HOH B 32 531 531 HOH HOH . G 5 HOH B 33 532 532 HOH HOH . G 5 HOH B 34 533 533 HOH HOH . G 5 HOH B 35 534 534 HOH HOH . G 5 HOH B 36 535 535 HOH HOH . G 5 HOH B 37 536 536 HOH HOH . G 5 HOH B 38 537 537 HOH HOH . G 5 HOH B 39 538 538 HOH HOH . G 5 HOH B 40 539 539 HOH HOH . G 5 HOH B 41 540 540 HOH HOH . G 5 HOH B 42 542 542 HOH HOH . G 5 HOH B 43 543 543 HOH HOH . G 5 HOH B 44 544 544 HOH HOH . G 5 HOH B 45 545 545 HOH HOH . G 5 HOH B 46 546 546 HOH HOH . G 5 HOH B 47 548 548 HOH HOH . G 5 HOH B 48 549 549 HOH HOH . G 5 HOH B 49 550 550 HOH HOH . G 5 HOH B 50 551 551 HOH HOH . G 5 HOH B 51 552 552 HOH HOH . G 5 HOH B 52 553 553 HOH HOH . G 5 HOH B 53 554 554 HOH HOH . G 5 HOH B 54 555 555 HOH HOH . G 5 HOH B 55 556 556 HOH HOH . G 5 HOH B 56 557 557 HOH HOH . G 5 HOH B 57 558 558 HOH HOH . G 5 HOH B 58 559 559 HOH HOH . G 5 HOH B 59 560 560 HOH HOH . G 5 HOH B 60 561 561 HOH HOH . G 5 HOH B 61 562 562 HOH HOH . G 5 HOH B 62 563 563 HOH HOH . G 5 HOH B 63 564 564 HOH HOH . G 5 HOH B 64 565 565 HOH HOH . G 5 HOH B 65 566 566 HOH HOH . G 5 HOH B 66 567 567 HOH HOH . G 5 HOH B 67 568 568 HOH HOH . G 5 HOH B 68 569 569 HOH HOH . G 5 HOH B 69 570 570 HOH HOH . G 5 HOH B 70 571 571 HOH HOH . G 5 HOH B 71 572 572 HOH HOH . G 5 HOH B 72 573 573 HOH HOH . G 5 HOH B 73 574 574 HOH HOH . G 5 HOH B 74 575 575 HOH HOH . G 5 HOH B 75 576 576 HOH HOH . G 5 HOH B 76 577 577 HOH HOH . G 5 HOH B 77 578 578 HOH HOH . G 5 HOH B 78 579 579 HOH HOH . G 5 HOH B 79 580 580 HOH HOH . G 5 HOH B 80 581 581 HOH HOH . G 5 HOH B 81 582 582 HOH HOH . G 5 HOH B 82 583 583 HOH HOH . G 5 HOH B 83 584 584 HOH HOH . G 5 HOH B 84 585 585 HOH HOH . G 5 HOH B 85 586 586 HOH HOH . G 5 HOH B 86 587 587 HOH HOH . G 5 HOH B 87 588 588 HOH HOH . G 5 HOH B 88 589 589 HOH HOH . G 5 HOH B 89 590 590 HOH HOH . G 5 HOH B 90 591 591 HOH HOH . G 5 HOH B 91 592 592 HOH HOH . G 5 HOH B 92 593 593 HOH HOH . G 5 HOH B 93 594 594 HOH HOH . G 5 HOH B 94 595 595 HOH HOH . G 5 HOH B 95 596 596 HOH HOH . G 5 HOH B 96 597 597 HOH HOH . G 5 HOH B 97 598 598 HOH HOH . G 5 HOH B 98 599 599 HOH HOH . G 5 HOH B 99 601 601 HOH HOH . G 5 HOH B 100 604 604 HOH HOH . G 5 HOH B 101 605 605 HOH HOH . G 5 HOH B 102 607 607 HOH HOH . G 5 HOH B 103 608 608 HOH HOH . G 5 HOH B 104 609 609 HOH HOH . G 5 HOH B 105 610 610 HOH HOH . G 5 HOH B 106 611 611 HOH HOH . G 5 HOH B 107 612 612 HOH HOH . G 5 HOH B 108 613 613 HOH HOH . G 5 HOH B 109 615 615 HOH HOH . G 5 HOH B 110 619 619 HOH HOH . G 5 HOH B 111 622 622 HOH HOH . G 5 HOH B 112 623 623 HOH HOH . G 5 HOH B 113 624 624 HOH HOH . G 5 HOH B 114 625 625 HOH HOH . G 5 HOH B 115 626 626 HOH HOH . G 5 HOH B 116 631 631 HOH HOH . G 5 HOH B 117 633 633 HOH HOH . G 5 HOH B 118 634 634 HOH HOH . G 5 HOH B 119 635 635 HOH HOH . G 5 HOH B 120 636 636 HOH HOH . G 5 HOH B 121 637 637 HOH HOH . G 5 HOH B 122 638 638 HOH HOH . G 5 HOH B 123 639 639 HOH HOH . G 5 HOH B 124 640 640 HOH HOH . G 5 HOH B 125 641 641 HOH HOH . G 5 HOH B 126 644 644 HOH HOH . G 5 HOH B 127 645 645 HOH HOH . G 5 HOH B 128 647 647 HOH HOH . G 5 HOH B 129 648 648 HOH HOH . G 5 HOH B 130 649 649 HOH HOH . G 5 HOH B 131 650 650 HOH HOH . G 5 HOH B 132 651 651 HOH HOH . G 5 HOH B 133 652 652 HOH HOH . G 5 HOH B 134 653 653 HOH HOH . G 5 HOH B 135 654 654 HOH HOH . G 5 HOH B 136 655 655 HOH HOH . G 5 HOH B 137 656 656 HOH HOH . G 5 HOH B 138 657 657 HOH HOH . G 5 HOH B 139 658 658 HOH HOH . G 5 HOH B 140 659 659 HOH HOH . G 5 HOH B 141 660 660 HOH HOH . G 5 HOH B 142 661 661 HOH HOH . G 5 HOH B 143 662 662 HOH HOH . G 5 HOH B 144 663 663 HOH HOH . G 5 HOH B 145 664 664 HOH HOH . G 5 HOH B 146 665 665 HOH HOH . G 5 HOH B 147 666 666 HOH HOH . G 5 HOH B 148 667 667 HOH HOH . G 5 HOH B 149 668 668 HOH HOH . G 5 HOH B 150 669 669 HOH HOH . G 5 HOH B 151 670 670 HOH HOH . G 5 HOH B 152 671 671 HOH HOH . G 5 HOH B 153 672 672 HOH HOH . G 5 HOH B 154 673 673 HOH HOH . G 5 HOH B 155 674 674 HOH HOH . G 5 HOH B 156 675 675 HOH HOH . G 5 HOH B 157 676 676 HOH HOH . G 5 HOH B 158 678 678 HOH HOH . G 5 HOH B 159 679 679 HOH HOH . G 5 HOH B 160 681 681 HOH HOH . G 5 HOH B 161 683 683 HOH HOH . G 5 HOH B 162 684 684 HOH HOH . G 5 HOH B 163 685 685 HOH HOH . G 5 HOH B 164 686 686 HOH HOH . G 5 HOH B 165 687 687 HOH HOH . G 5 HOH B 166 688 688 HOH HOH . G 5 HOH B 167 691 691 HOH HOH . G 5 HOH B 168 692 692 HOH HOH . G 5 HOH B 169 693 693 HOH HOH . G 5 HOH B 170 694 694 HOH HOH . G 5 HOH B 171 695 695 HOH HOH . G 5 HOH B 172 696 696 HOH HOH . G 5 HOH B 173 697 697 HOH HOH . G 5 HOH B 174 698 698 HOH HOH . G 5 HOH B 175 699 699 HOH HOH . G 5 HOH B 176 700 700 HOH HOH . G 5 HOH B 177 701 701 HOH HOH . G 5 HOH B 178 702 702 HOH HOH . G 5 HOH B 179 703 703 HOH HOH . G 5 HOH B 180 708 708 HOH HOH . G 5 HOH B 181 709 709 HOH HOH . G 5 HOH B 182 710 710 HOH HOH . G 5 HOH B 183 711 711 HOH HOH . G 5 HOH B 184 714 714 HOH HOH . G 5 HOH B 185 715 715 HOH HOH . G 5 HOH B 186 716 716 HOH HOH . G 5 HOH B 187 717 717 HOH HOH . G 5 HOH B 188 718 718 HOH HOH . G 5 HOH B 189 719 719 HOH HOH . G 5 HOH B 190 720 720 HOH HOH . G 5 HOH B 191 722 722 HOH HOH . G 5 HOH B 192 723 723 HOH HOH . G 5 HOH B 193 724 724 HOH HOH . G 5 HOH B 194 725 725 HOH HOH . G 5 HOH B 195 726 726 HOH HOH . G 5 HOH B 196 733 733 HOH HOH . G 5 HOH B 197 734 734 HOH HOH . G 5 HOH B 198 735 735 HOH HOH . G 5 HOH B 199 736 736 HOH HOH . G 5 HOH B 200 737 737 HOH HOH . G 5 HOH B 201 738 738 HOH HOH . G 5 HOH B 202 739 739 HOH HOH . G 5 HOH B 203 740 740 HOH HOH . G 5 HOH B 204 741 741 HOH HOH . G 5 HOH B 205 742 742 HOH HOH . G 5 HOH B 206 743 743 HOH HOH . G 5 HOH B 207 744 744 HOH HOH . G 5 HOH B 208 749 749 HOH HOH . G 5 HOH B 209 750 750 HOH HOH . G 5 HOH B 210 751 751 HOH HOH . G 5 HOH B 211 752 752 HOH HOH . G 5 HOH B 212 753 753 HOH HOH . G 5 HOH B 213 754 754 HOH HOH . G 5 HOH B 214 755 755 HOH HOH . G 5 HOH B 215 756 756 HOH HOH . G 5 HOH B 216 757 757 HOH HOH . G 5 HOH B 217 758 758 HOH HOH . G 5 HOH B 218 759 759 HOH HOH . G 5 HOH B 219 760 760 HOH HOH . G 5 HOH B 220 761 761 HOH HOH . G 5 HOH B 221 762 762 HOH HOH . G 5 HOH B 222 764 764 HOH HOH . G 5 HOH B 223 765 765 HOH HOH . G 5 HOH B 224 766 766 HOH HOH . G 5 HOH B 225 767 767 HOH HOH . G 5 HOH B 226 768 768 HOH HOH . G 5 HOH B 227 769 769 HOH HOH . G 5 HOH B 228 770 770 HOH HOH . G 5 HOH B 229 771 771 HOH HOH . G 5 HOH B 230 772 772 HOH HOH . G 5 HOH B 231 773 773 HOH HOH . G 5 HOH B 232 774 774 HOH HOH . G 5 HOH B 233 775 775 HOH HOH . G 5 HOH B 234 776 776 HOH HOH . G 5 HOH B 235 777 777 HOH HOH . G 5 HOH B 236 778 778 HOH HOH . G 5 HOH B 237 779 779 HOH HOH . G 5 HOH B 238 780 780 HOH HOH . G 5 HOH B 239 781 781 HOH HOH . G 5 HOH B 240 782 782 HOH HOH . G 5 HOH B 241 783 783 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 156.598 29.061 88.332 1 18.2 ? S SO4 303 B 1 HETATM 2 O O1 SO4 . . . D 4 155.12 29.089 88.396 1 19.87 ? O1 SO4 303 B 1 HETATM 3 O O2 SO4 . . . D 4 157.165 30.365 88.706 1 14.31 ? O2 SO4 303 B 1 HETATM 4 O O3 SO4 . . . D 4 157.088 28.055 89.284 1 21.18 ? O3 SO4 303 B 1 HETATM 5 O O4 SO4 . . . D 4 157.027 28.729 86.961 1 23.13 ? O4 SO4 303 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #