data_2PGR
#
_model_server_result.job_id            E_jR1pQFh6WlOkQpqAwq1w 
_model_server_result.datetime_utc      '2024-12-02 15:31:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pgr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    2PGR 
#
_exptl.entry_id    2PGR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              41.052 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ACETONITRILE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PGR 
_cell.length_a            143.488 
_cell.length_b            146.386 
_cell.length_c            50.034 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PGR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 31 A GLN 23 1_555 A N MSE 32 A MSE 24 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C GLN 31 A GLN 23 1_555 A N MSE 32 A MSE 24 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 A C MSE 32 A MSE 24 1_555 A N SER 33 A SER 25 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 32 A MSE 24 1_555 A N SER 33 A SER 25 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C LEU 131 A LEU 123 1_555 A N MSE 132 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 A C MSE 132 A MSE 124 1_555 A N GLU 133 A GLU 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C LEU 175 A LEU 167 1_555 A N MSE 176 A MSE 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 A C MSE 176 A MSE 168 1_555 A N CYS 177 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale9 A C ASP 273 A ASP 265 1_555 A N MSE 274 A MSE 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 A C MSE 274 A MSE 266 1_555 A N VAL 275 A VAL 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C SER 297 A SER 289 1_555 A N MSE 298 A MSE 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 A C MSE 298 A MSE 290 1_555 A N ASP 299 A ASP 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale13 A C GLY 321 A GLY 313 1_555 A N MSE 322 A MSE 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 A C MSE 322 A MSE 314 1_555 A N PHE 323 A PHE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 A C PHE 345 A PHE 337 1_555 A N MSE 346 A MSE 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 A C MSE 346 A MSE 338 1_555 A N LYS 347 A LYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale17 A C LYS 347 A LYS 339 1_555 A N MSE 348 A MSE 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale18 A C MSE 348 A MSE 340 1_555 A N ASN 349 A ASN 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale19 A C PHE 357 A PHE 349 1_555 A N MSE 358 A MSE 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 A C MSE 358 A MSE 350 1_555 A N ASP 359 A ASP 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 50 A HIS 42 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 A NE2 HIS 52 A HIS 44 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc3 A NE2 HIS 234 A HIS 226 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc4 A OD1 ASP 318 A ASP 310 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C O8 DCF . A DCF 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? 
#
_chem_comp.formula           'C2 H3 N' 
_chem_comp.formula_weight    41.052 
_chem_comp.id                CCN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ACETONITRILE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C1 CCN trip 70 n n 
C1 C2 CCN sing 71 n n 
C2 H21 CCN sing 72 n n 
C2 H22 CCN sing 73 n n 
C2 H23 CCN sing 74 n n 
#
_atom_sites.entry_id                     2PGR 
_atom_sites.fract_transf_matrix[1][1]    0.006969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006831 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 401 401 ZN ZN . 
C 3 DCF A 1 501 501 DCF DCF . 
D 4 CCN A 1 601 601 CCN CCN . 
E 4 CCN A 1 602 602 CCN CCN . 
F 5 HOH A 1 603 1 HOH HOH . 
F 5 HOH A 2 604 2 HOH HOH . 
F 5 HOH A 3 605 3 HOH HOH . 
F 5 HOH A 4 606 4 HOH HOH . 
F 5 HOH A 5 607 5 HOH HOH . 
F 5 HOH A 6 608 6 HOH HOH . 
F 5 HOH A 7 609 7 HOH HOH . 
F 5 HOH A 8 610 8 HOH HOH . 
F 5 HOH A 9 611 9 HOH HOH . 
F 5 HOH A 10 612 10 HOH HOH . 
F 5 HOH A 11 613 11 HOH HOH . 
F 5 HOH A 12 614 12 HOH HOH . 
F 5 HOH A 13 615 13 HOH HOH . 
F 5 HOH A 14 616 14 HOH HOH . 
F 5 HOH A 15 617 16 HOH HOH . 
F 5 HOH A 16 618 17 HOH HOH . 
F 5 HOH A 17 619 18 HOH HOH . 
F 5 HOH A 18 620 19 HOH HOH . 
F 5 HOH A 19 621 20 HOH HOH . 
F 5 HOH A 20 622 21 HOH HOH . 
F 5 HOH A 21 623 22 HOH HOH . 
F 5 HOH A 22 624 23 HOH HOH . 
F 5 HOH A 23 625 24 HOH HOH . 
F 5 HOH A 24 626 25 HOH HOH . 
F 5 HOH A 25 627 26 HOH HOH . 
F 5 HOH A 26 628 27 HOH HOH . 
F 5 HOH A 27 629 28 HOH HOH . 
F 5 HOH A 28 630 29 HOH HOH . 
F 5 HOH A 29 631 30 HOH HOH . 
F 5 HOH A 30 632 31 HOH HOH . 
F 5 HOH A 31 633 32 HOH HOH . 
F 5 HOH A 32 634 33 HOH HOH . 
F 5 HOH A 33 635 34 HOH HOH . 
F 5 HOH A 34 636 35 HOH HOH . 
F 5 HOH A 35 637 36 HOH HOH . 
F 5 HOH A 36 638 37 HOH HOH . 
F 5 HOH A 37 639 38 HOH HOH . 
F 5 HOH A 38 640 39 HOH HOH . 
F 5 HOH A 39 641 40 HOH HOH . 
F 5 HOH A 40 642 41 HOH HOH . 
F 5 HOH A 41 643 43 HOH HOH . 
F 5 HOH A 42 644 44 HOH HOH . 
F 5 HOH A 43 645 46 HOH HOH . 
F 5 HOH A 44 646 47 HOH HOH . 
F 5 HOH A 45 647 48 HOH HOH . 
F 5 HOH A 46 648 49 HOH HOH . 
F 5 HOH A 47 649 50 HOH HOH . 
F 5 HOH A 48 650 52 HOH HOH . 
F 5 HOH A 49 651 53 HOH HOH . 
F 5 HOH A 50 652 54 HOH HOH . 
F 5 HOH A 51 653 56 HOH HOH . 
F 5 HOH A 52 654 57 HOH HOH . 
F 5 HOH A 53 655 58 HOH HOH . 
F 5 HOH A 54 656 60 HOH HOH . 
F 5 HOH A 55 657 61 HOH HOH . 
F 5 HOH A 56 658 62 HOH HOH . 
F 5 HOH A 57 659 63 HOH HOH . 
F 5 HOH A 58 660 64 HOH HOH . 
F 5 HOH A 59 661 66 HOH HOH . 
F 5 HOH A 60 662 67 HOH HOH . 
F 5 HOH A 61 663 68 HOH HOH . 
F 5 HOH A 62 664 69 HOH HOH . 
F 5 HOH A 63 665 70 HOH HOH . 
F 5 HOH A 64 666 71 HOH HOH . 
F 5 HOH A 65 667 72 HOH HOH . 
F 5 HOH A 66 668 73 HOH HOH . 
F 5 HOH A 67 669 74 HOH HOH . 
F 5 HOH A 68 670 75 HOH HOH . 
F 5 HOH A 69 671 76 HOH HOH . 
F 5 HOH A 70 672 77 HOH HOH . 
F 5 HOH A 71 673 78 HOH HOH . 
F 5 HOH A 72 674 79 HOH HOH . 
F 5 HOH A 73 675 80 HOH HOH . 
F 5 HOH A 74 676 81 HOH HOH . 
F 5 HOH A 75 677 82 HOH HOH . 
F 5 HOH A 76 678 83 HOH HOH . 
F 5 HOH A 77 679 84 HOH HOH . 
F 5 HOH A 78 680 85 HOH HOH . 
F 5 HOH A 79 681 86 HOH HOH . 
F 5 HOH A 80 682 87 HOH HOH . 
F 5 HOH A 81 683 88 HOH HOH . 
F 5 HOH A 82 684 89 HOH HOH . 
F 5 HOH A 83 685 90 HOH HOH . 
F 5 HOH A 84 686 91 HOH HOH . 
F 5 HOH A 85 687 92 HOH HOH . 
F 5 HOH A 86 688 93 HOH HOH . 
F 5 HOH A 87 689 94 HOH HOH . 
F 5 HOH A 88 690 95 HOH HOH . 
F 5 HOH A 89 691 96 HOH HOH . 
F 5 HOH A 90 692 97 HOH HOH . 
F 5 HOH A 91 693 98 HOH HOH . 
F 5 HOH A 92 694 99 HOH HOH . 
F 5 HOH A 93 695 100 HOH HOH . 
F 5 HOH A 94 696 101 HOH HOH . 
F 5 HOH A 95 697 102 HOH HOH . 
F 5 HOH A 96 698 103 HOH HOH . 
F 5 HOH A 97 699 104 HOH HOH . 
F 5 HOH A 98 700 107 HOH HOH . 
F 5 HOH A 99 701 109 HOH HOH . 
F 5 HOH A 100 702 110 HOH HOH . 
F 5 HOH A 101 703 112 HOH HOH . 
F 5 HOH A 102 704 114 HOH HOH . 
F 5 HOH A 103 705 115 HOH HOH . 
F 5 HOH A 104 706 116 HOH HOH . 
F 5 HOH A 105 707 117 HOH HOH . 
F 5 HOH A 106 708 118 HOH HOH . 
F 5 HOH A 107 709 119 HOH HOH . 
F 5 HOH A 108 710 120 HOH HOH . 
F 5 HOH A 109 711 121 HOH HOH . 
F 5 HOH A 110 712 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N CCN . . . D 4 42.523 34.525 33.891 1 46.22 ? N CCN 601 A 1 
HETATM 2 C C1 CCN . . . D 4 42.04 34.066 34.851 1 48.37 ? C1 CCN 601 A 1 
HETATM 3 C C2 CCN . . . D 4 41.328 33.498 36.013 1 45.01 ? C2 CCN 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           3 
#