data_2PH5 # _model_server_result.job_id n9q_au7FsiF2rJtkuyLZMQ _model_server_result.datetime_utc '2024-11-04 22:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ph5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 2PH5 # _exptl.entry_id 2PH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PH5 _cell.length_a 95.848 _cell.length_b 146.902 _cell.length_c 85.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -95.848 0 42.8425 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 28 A LEU 28 1_555 A N MSE 29 A MSE 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 29 A MSE 29 1_555 A N PRO 30 A PRO 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C ALA 195 A ALA 195 1_555 A N MSE 196 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 196 A MSE 196 1_555 A N THR 197 A THR 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C VAL 274 A VAL 274 1_555 A N MSE 275 A MSE 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 275 A MSE 275 1_555 A N VAL 276 A VAL 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale7 A C LEU 363 A LEU 363 1_555 A N MSE 364 A MSE 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 364 A MSE 364 1_555 A N GLY 365 A GLY 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale9 A C SER 399 A SER 399 1_555 A N MSE 400 A MSE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 400 A MSE 400 1_555 A N ILE 401 A ILE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PH5 _atom_sites.fract_transf_matrix[1][1] 0.010433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 502 502 SO4 SO4 . C 3 NAD A 1 501 501 NAD NAD . D 4 HOH A 1 503 1 HOH HOH . D 4 HOH A 2 504 2 HOH HOH . D 4 HOH A 3 505 3 HOH HOH . D 4 HOH A 4 506 4 HOH HOH . D 4 HOH A 5 507 5 HOH HOH . D 4 HOH A 6 508 6 HOH HOH . D 4 HOH A 7 509 7 HOH HOH . D 4 HOH A 8 510 8 HOH HOH . D 4 HOH A 9 511 9 HOH HOH . D 4 HOH A 10 512 10 HOH HOH . D 4 HOH A 11 513 11 HOH HOH . D 4 HOH A 12 514 12 HOH HOH . D 4 HOH A 13 515 13 HOH HOH . D 4 HOH A 14 516 14 HOH HOH . D 4 HOH A 15 517 15 HOH HOH . D 4 HOH A 16 518 16 HOH HOH . D 4 HOH A 17 519 17 HOH HOH . D 4 HOH A 18 520 18 HOH HOH . D 4 HOH A 19 521 19 HOH HOH . D 4 HOH A 20 522 20 HOH HOH . D 4 HOH A 21 523 21 HOH HOH . D 4 HOH A 22 524 22 HOH HOH . D 4 HOH A 23 525 23 HOH HOH . D 4 HOH A 24 526 24 HOH HOH . D 4 HOH A 25 527 25 HOH HOH . D 4 HOH A 26 528 26 HOH HOH . D 4 HOH A 27 529 27 HOH HOH . D 4 HOH A 28 530 28 HOH HOH . D 4 HOH A 29 531 29 HOH HOH . D 4 HOH A 30 532 30 HOH HOH . D 4 HOH A 31 533 31 HOH HOH . D 4 HOH A 32 534 32 HOH HOH . D 4 HOH A 33 535 33 HOH HOH . D 4 HOH A 34 536 34 HOH HOH . D 4 HOH A 35 537 35 HOH HOH . D 4 HOH A 36 538 36 HOH HOH . D 4 HOH A 37 539 37 HOH HOH . D 4 HOH A 38 540 38 HOH HOH . D 4 HOH A 39 541 39 HOH HOH . D 4 HOH A 40 542 40 HOH HOH . D 4 HOH A 41 543 41 HOH HOH . D 4 HOH A 42 544 42 HOH HOH . D 4 HOH A 43 545 43 HOH HOH . D 4 HOH A 44 546 44 HOH HOH . D 4 HOH A 45 547 45 HOH HOH . D 4 HOH A 46 548 46 HOH HOH . D 4 HOH A 47 549 47 HOH HOH . D 4 HOH A 48 550 48 HOH HOH . D 4 HOH A 49 551 49 HOH HOH . D 4 HOH A 50 552 50 HOH HOH . D 4 HOH A 51 553 51 HOH HOH . D 4 HOH A 52 554 52 HOH HOH . D 4 HOH A 53 555 53 HOH HOH . D 4 HOH A 54 556 54 HOH HOH . D 4 HOH A 55 557 55 HOH HOH . D 4 HOH A 56 558 56 HOH HOH . D 4 HOH A 57 559 57 HOH HOH . D 4 HOH A 58 560 58 HOH HOH . D 4 HOH A 59 561 59 HOH HOH . D 4 HOH A 60 562 60 HOH HOH . D 4 HOH A 61 563 61 HOH HOH . D 4 HOH A 62 564 62 HOH HOH . D 4 HOH A 63 565 63 HOH HOH . D 4 HOH A 64 566 64 HOH HOH . D 4 HOH A 65 567 65 HOH HOH . D 4 HOH A 66 568 66 HOH HOH . D 4 HOH A 67 569 67 HOH HOH . D 4 HOH A 68 570 68 HOH HOH . D 4 HOH A 69 571 69 HOH HOH . D 4 HOH A 70 572 70 HOH HOH . D 4 HOH A 71 573 71 HOH HOH . D 4 HOH A 72 574 72 HOH HOH . D 4 HOH A 73 575 73 HOH HOH . D 4 HOH A 74 576 74 HOH HOH . D 4 HOH A 75 577 75 HOH HOH . D 4 HOH A 76 578 76 HOH HOH . D 4 HOH A 77 579 77 HOH HOH . D 4 HOH A 78 580 78 HOH HOH . D 4 HOH A 79 581 79 HOH HOH . D 4 HOH A 80 582 80 HOH HOH . D 4 HOH A 81 583 81 HOH HOH . D 4 HOH A 82 584 82 HOH HOH . D 4 HOH A 83 585 83 HOH HOH . D 4 HOH A 84 586 84 HOH HOH . D 4 HOH A 85 587 85 HOH HOH . D 4 HOH A 86 588 86 HOH HOH . D 4 HOH A 87 589 87 HOH HOH . D 4 HOH A 88 590 88 HOH HOH . D 4 HOH A 89 591 89 HOH HOH . D 4 HOH A 90 592 90 HOH HOH . D 4 HOH A 91 593 91 HOH HOH . D 4 HOH A 92 594 92 HOH HOH . D 4 HOH A 93 595 93 HOH HOH . D 4 HOH A 94 596 94 HOH HOH . D 4 HOH A 95 597 95 HOH HOH . D 4 HOH A 96 598 96 HOH HOH . D 4 HOH A 97 599 97 HOH HOH . D 4 HOH A 98 600 98 HOH HOH . D 4 HOH A 99 601 99 HOH HOH . D 4 HOH A 100 602 100 HOH HOH . D 4 HOH A 101 603 101 HOH HOH . D 4 HOH A 102 604 102 HOH HOH . D 4 HOH A 103 605 103 HOH HOH . D 4 HOH A 104 606 104 HOH HOH . D 4 HOH A 105 607 105 HOH HOH . D 4 HOH A 106 608 106 HOH HOH . D 4 HOH A 107 609 107 HOH HOH . D 4 HOH A 108 610 108 HOH HOH . D 4 HOH A 109 611 109 HOH HOH . D 4 HOH A 110 612 110 HOH HOH . D 4 HOH A 111 613 111 HOH HOH . D 4 HOH A 112 614 112 HOH HOH . D 4 HOH A 113 615 113 HOH HOH . D 4 HOH A 114 616 114 HOH HOH . D 4 HOH A 115 617 115 HOH HOH . D 4 HOH A 116 618 116 HOH HOH . D 4 HOH A 117 619 117 HOH HOH . D 4 HOH A 118 620 118 HOH HOH . D 4 HOH A 119 621 119 HOH HOH . D 4 HOH A 120 622 120 HOH HOH . D 4 HOH A 121 623 121 HOH HOH . D 4 HOH A 122 624 122 HOH HOH . D 4 HOH A 123 625 123 HOH HOH . D 4 HOH A 124 626 124 HOH HOH . D 4 HOH A 125 627 125 HOH HOH . D 4 HOH A 126 628 126 HOH HOH . D 4 HOH A 127 629 127 HOH HOH . D 4 HOH A 128 630 128 HOH HOH . D 4 HOH A 129 631 129 HOH HOH . D 4 HOH A 130 632 130 HOH HOH . D 4 HOH A 131 633 131 HOH HOH . D 4 HOH A 132 634 132 HOH HOH . D 4 HOH A 133 635 133 HOH HOH . D 4 HOH A 134 636 134 HOH HOH . D 4 HOH A 135 637 135 HOH HOH . D 4 HOH A 136 638 136 HOH HOH . D 4 HOH A 137 639 137 HOH HOH . D 4 HOH A 138 640 138 HOH HOH . D 4 HOH A 139 641 139 HOH HOH . D 4 HOH A 140 642 140 HOH HOH . D 4 HOH A 141 643 141 HOH HOH . D 4 HOH A 142 644 142 HOH HOH . D 4 HOH A 143 645 143 HOH HOH . D 4 HOH A 144 646 144 HOH HOH . D 4 HOH A 145 647 145 HOH HOH . D 4 HOH A 146 648 146 HOH HOH . D 4 HOH A 147 649 147 HOH HOH . D 4 HOH A 148 650 148 HOH HOH . D 4 HOH A 149 651 149 HOH HOH . D 4 HOH A 150 652 150 HOH HOH . D 4 HOH A 151 653 151 HOH HOH . D 4 HOH A 152 654 152 HOH HOH . D 4 HOH A 153 655 153 HOH HOH . D 4 HOH A 154 656 154 HOH HOH . D 4 HOH A 155 657 155 HOH HOH . D 4 HOH A 156 658 156 HOH HOH . D 4 HOH A 157 659 157 HOH HOH . D 4 HOH A 158 660 158 HOH HOH . D 4 HOH A 159 661 159 HOH HOH . D 4 HOH A 160 662 160 HOH HOH . D 4 HOH A 161 663 161 HOH HOH . D 4 HOH A 162 664 162 HOH HOH . D 4 HOH A 163 665 163 HOH HOH . D 4 HOH A 164 666 164 HOH HOH . D 4 HOH A 165 667 165 HOH HOH . D 4 HOH A 166 668 166 HOH HOH . D 4 HOH A 167 669 167 HOH HOH . D 4 HOH A 168 670 168 HOH HOH . D 4 HOH A 169 671 169 HOH HOH . D 4 HOH A 170 672 170 HOH HOH . D 4 HOH A 171 673 171 HOH HOH . D 4 HOH A 172 674 172 HOH HOH . D 4 HOH A 173 675 173 HOH HOH . D 4 HOH A 174 676 174 HOH HOH . D 4 HOH A 175 677 175 HOH HOH . D 4 HOH A 176 678 176 HOH HOH . D 4 HOH A 177 679 177 HOH HOH . D 4 HOH A 178 680 178 HOH HOH . D 4 HOH A 179 681 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 -29.261 88.553 35.846 1 27.86 ? PA NAD 501 A 1 HETATM 2 O O1A NAD . . . C 3 -30.035 89.485 36.738 1 26.13 ? O1A NAD 501 A 1 HETATM 3 O O2A NAD . . . C 3 -30.005 87.461 35.16 1 27.37 ? O2A NAD 501 A 1 HETATM 4 O O5B NAD . . . C 3 -28.03 87.877 36.657 1 25.38 ? O5B NAD 501 A 1 HETATM 5 C C5B NAD . . . C 3 -27.17 88.677 37.464 1 27 ? C5B NAD 501 A 1 HETATM 6 C C4B NAD . . . C 3 -26.556 87.777 38.553 1 29.21 ? C4B NAD 501 A 1 HETATM 7 O O4B NAD . . . C 3 -25.752 88.622 39.347 1 29 ? O4B NAD 501 A 1 HETATM 8 C C3B NAD . . . C 3 -27.576 87.115 39.485 1 28.14 ? C3B NAD 501 A 1 HETATM 9 O O3B NAD . . . C 3 -27.38 85.699 39.509 1 29.26 ? O3B NAD 501 A 1 HETATM 10 C C2B NAD . . . C 3 -27.318 87.745 40.825 1 28.91 ? C2B NAD 501 A 1 HETATM 11 O O2B NAD . . . C 3 -27.561 86.915 41.938 1 28.66 ? O2B NAD 501 A 1 HETATM 12 C C1B NAD . . . C 3 -25.879 88.249 40.704 1 28.62 ? C1B NAD 501 A 1 HETATM 13 N N9A NAD . . . C 3 -25.548 89.431 41.509 1 29.31 ? N9A NAD 501 A 1 HETATM 14 C C8A NAD . . . C 3 -26.463 90.445 41.842 1 29.97 ? C8A NAD 501 A 1 HETATM 15 N N7A NAD . . . C 3 -26.244 90.921 43.084 1 29.74 ? N7A NAD 501 A 1 HETATM 16 C C5A NAD . . . C 3 -25.2 90.219 43.581 1 30.34 ? C5A NAD 501 A 1 HETATM 17 C C6A NAD . . . C 3 -24.541 90.287 44.808 1 29.38 ? C6A NAD 501 A 1 HETATM 18 N N6A NAD . . . C 3 -24.859 91.149 45.775 1 26.74 ? N6A NAD 501 A 1 HETATM 19 N N1A NAD . . . C 3 -23.49 89.403 45.008 1 29.57 ? N1A NAD 501 A 1 HETATM 20 C C2A NAD . . . C 3 -23.099 88.488 44.051 1 28.17 ? C2A NAD 501 A 1 HETATM 21 N N3A NAD . . . C 3 -23.728 88.408 42.831 1 29.92 ? N3A NAD 501 A 1 HETATM 22 C C4A NAD . . . C 3 -24.761 89.279 42.634 1 29.62 ? C4A NAD 501 A 1 HETATM 23 O O3 NAD . . . C 3 -28.625 89.486 34.738 1 28.99 ? O3 NAD 501 A 1 HETATM 24 P PN NAD . . . C 3 -27.619 89.213 33.518 1 29.46 ? PN NAD 501 A 1 HETATM 25 O O1N NAD . . . C 3 -28.204 89.861 32.32 1 29.57 ? O1N NAD 501 A 1 HETATM 26 O O2N NAD . . . C 3 -27.323 87.737 33.48 1 25.34 ? O2N NAD 501 A 1 HETATM 27 O O5D NAD . . . C 3 -26.452 90.074 34.156 1 32.91 ? O5D NAD 501 A 1 HETATM 28 C C5D NAD . . . C 3 -25.193 90.319 33.581 1 34.33 ? C5D NAD 501 A 1 HETATM 29 C C4D NAD . . . C 3 -25.306 91.696 32.961 1 35.46 ? C4D NAD 501 A 1 HETATM 30 O O4D NAD . . . C 3 -24.923 91.622 31.614 1 35.99 ? O4D NAD 501 A 1 HETATM 31 C C3D NAD . . . C 3 -25.752 93.117 33.237 1 35.59 ? C3D NAD 501 A 1 HETATM 32 O O3D NAD . . . C 3 -24.729 93.875 33.863 1 35.53 ? O3D NAD 501 A 1 HETATM 33 C C2D NAD . . . C 3 -26.093 93.611 31.842 1 35.56 ? C2D NAD 501 A 1 HETATM 34 O O2D NAD . . . C 3 -26.06 95.004 31.716 1 37.5 ? O2D NAD 501 A 1 HETATM 35 C C1D NAD . . . C 3 -25.095 92.867 30.963 1 34.3 ? C1D NAD 501 A 1 HETATM 36 N N1N NAD . . . C 3 -25.547 92.505 29.599 1 33.51 ? N1N NAD 501 A 1 HETATM 37 C C2N NAD . . . C 3 -24.862 92.965 28.497 1 32.92 ? C2N NAD 501 A 1 HETATM 38 C C3N NAD . . . C 3 -25.321 92.57 27.222 1 32.9 ? C3N NAD 501 A 1 HETATM 39 C C7N NAD . . . C 3 -24.635 93.006 25.974 1 31.18 ? C7N NAD 501 A 1 HETATM 40 O O7N NAD . . . C 3 -25.147 92.555 24.784 1 32.78 ? O7N NAD 501 A 1 HETATM 41 N N7N NAD . . . C 3 -23.563 93.77 25.976 1 30.93 ? N7N NAD 501 A 1 HETATM 42 C C4N NAD . . . C 3 -26.463 91.719 27.075 1 33.89 ? C4N NAD 501 A 1 HETATM 43 C C5N NAD . . . C 3 -27.137 91.275 28.232 1 33.84 ? C5N NAD 501 A 1 HETATM 44 C C6N NAD . . . C 3 -26.694 91.654 29.485 1 32.74 ? C6N NAD 501 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #