data_2PH9 # _model_server_result.job_id Afd6moG1PlR0TyY714zizg _model_server_result.datetime_utc '2024-11-07 13:10:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ph9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 2PH9 # _exptl.entry_id 2PH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (-)-GALANTHAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PH9 _cell.length_a 143.95 _cell.length_b 145.472 _cell.length_c 143.555 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 127 1_555 A SG CYS 149 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf2 A SG CYS 199 A CYS 190 1_555 A SG CYS 200 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf3 B SG CYS 136 B CYS 127 1_555 B SG CYS 149 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf4 B SG CYS 199 B CYS 190 1_555 B SG CYS 200 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf5 C SG CYS 136 C CYS 127 1_555 C SG CYS 149 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf6 C SG CYS 199 C CYS 190 1_555 C SG CYS 200 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 D SG CYS 136 D CYS 127 1_555 D SG CYS 149 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 D SG CYS 199 D CYS 190 1_555 D SG CYS 200 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf9 E SG CYS 136 E CYS 127 1_555 E SG CYS 149 E CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf10 E SG CYS 199 E CYS 190 1_555 E SG CYS 200 E CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C17 H21 N O3' _chem_comp.formula_weight 287.354 _chem_comp.id GNT _chem_comp.mon_nstd_flag . _chem_comp.name (-)-GALANTHAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GNT doub 129 n n C1 C42 GNT sing 130 n n C1 H1 GNT sing 131 n n C2 C3 GNT sing 132 n n C2 H2 GNT sing 133 n n C3 C4 GNT sing 134 n n C3 O18 GNT sing 135 n n C3 H3 GNT sing 136 n n C4 C41 GNT sing 137 n n C4 H41A GNT sing 138 n n C4 H42 GNT sing 139 n n C41 C42 GNT sing 140 n n C41 O5 GNT sing 141 n n C41 H41 GNT sing 142 n n C42 C12 GNT sing 143 n n C42 C14 GNT sing 144 n n O5 C13 GNT sing 145 n n C6 C7 GNT doub 146 n y C6 C13 GNT sing 147 n y C6 O17 GNT sing 148 n n C7 C8 GNT sing 149 n y C7 H7 GNT sing 150 n n C8 C15 GNT doub 151 n y C8 H8 GNT sing 152 n n C9 N10 GNT sing 153 n n C9 C15 GNT sing 154 n n C9 H91 GNT sing 155 n n C9 H92 GNT sing 156 n n N10 C11 GNT sing 157 n n N10 C19 GNT sing 158 n n C11 C12 GNT sing 159 n n C11 H111 GNT sing 160 n n C11 H112 GNT sing 161 n n C12 H121 GNT sing 162 n n C12 H122 GNT sing 163 n n C13 C14 GNT doub 164 n y C14 C15 GNT sing 165 n y C16 O17 GNT sing 166 n n C16 H161 GNT sing 167 n n C16 H162 GNT sing 168 n n C16 H163 GNT sing 169 n n O18 H18 GNT sing 170 n n C19 H191 GNT sing 171 n n C19 H192 GNT sing 172 n n C19 H193 GNT sing 173 n n # _atom_sites.entry_id 2PH9 _atom_sites.fract_transf_matrix[1][1] 0.006947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GNT A 1 301 301 GNT GNT . G 3 PG4 B 1 401 401 PG4 PG8 . H 2 GNT C 1 301 301 GNT GNT . I 2 GNT D 1 301 301 GNT GNT . J 2 GNT E 1 301 301 GNT GNT . K 4 HOH A 1 302 5 HOH HOH . K 4 HOH A 2 303 9 HOH HOH . K 4 HOH A 3 304 16 HOH HOH . K 4 HOH A 4 305 19 HOH HOH . K 4 HOH A 5 306 25 HOH HOH . K 4 HOH A 6 307 30 HOH HOH . K 4 HOH A 7 308 51 HOH HOH . K 4 HOH A 8 309 54 HOH HOH . K 4 HOH A 9 310 78 HOH HOH . K 4 HOH A 10 311 80 HOH HOH . K 4 HOH A 11 312 83 HOH HOH . K 4 HOH A 12 313 93 HOH HOH . K 4 HOH A 13 314 107 HOH HOH . K 4 HOH A 14 315 137 HOH HOH . K 4 HOH A 15 316 182 HOH HOH . K 4 HOH A 16 317 196 HOH HOH . K 4 HOH A 17 318 208 HOH HOH . K 4 HOH A 18 319 226 HOH HOH . K 4 HOH A 19 320 227 HOH HOH . K 4 HOH A 20 321 228 HOH HOH . K 4 HOH A 21 322 229 HOH HOH . K 4 HOH A 22 323 230 HOH HOH . K 4 HOH A 23 324 231 HOH HOH . K 4 HOH A 24 325 232 HOH HOH . L 4 HOH B 1 402 6 HOH HOH . L 4 HOH B 2 403 24 HOH HOH . L 4 HOH B 3 404 34 HOH HOH . L 4 HOH B 4 405 38 HOH HOH . L 4 HOH B 5 406 44 HOH HOH . L 4 HOH B 6 407 50 HOH HOH . L 4 HOH B 7 408 88 HOH HOH . L 4 HOH B 8 409 100 HOH HOH . L 4 HOH B 9 410 119 HOH HOH . L 4 HOH B 10 411 123 HOH HOH . L 4 HOH B 11 412 133 HOH HOH . L 4 HOH B 12 413 201 HOH HOH . L 4 HOH B 13 414 202 HOH HOH . L 4 HOH B 14 415 203 HOH HOH . L 4 HOH B 15 416 204 HOH HOH . L 4 HOH B 16 417 207 HOH HOH . L 4 HOH B 17 418 214 HOH HOH . L 4 HOH B 18 419 219 HOH HOH . L 4 HOH B 19 420 222 HOH HOH . L 4 HOH B 20 421 223 HOH HOH . L 4 HOH B 21 422 224 HOH HOH . M 4 HOH C 1 302 2 HOH HOH . M 4 HOH C 2 303 11 HOH HOH . M 4 HOH C 3 304 13 HOH HOH . M 4 HOH C 4 305 14 HOH HOH . M 4 HOH C 5 306 15 HOH HOH . M 4 HOH C 6 307 23 HOH HOH . M 4 HOH C 7 308 32 HOH HOH . M 4 HOH C 8 309 42 HOH HOH . M 4 HOH C 9 310 47 HOH HOH . M 4 HOH C 10 311 49 HOH HOH . M 4 HOH C 11 312 63 HOH HOH . M 4 HOH C 12 313 86 HOH HOH . M 4 HOH C 13 314 120 HOH HOH . M 4 HOH C 14 315 130 HOH HOH . M 4 HOH C 15 316 149 HOH HOH . M 4 HOH C 16 317 186 HOH HOH . M 4 HOH C 17 318 190 HOH HOH . M 4 HOH C 18 319 211 HOH HOH . M 4 HOH C 19 320 225 HOH HOH . N 4 HOH D 1 302 1 HOH HOH . N 4 HOH D 2 303 20 HOH HOH . N 4 HOH D 3 304 22 HOH HOH . N 4 HOH D 4 305 26 HOH HOH . N 4 HOH D 5 306 27 HOH HOH . N 4 HOH D 6 307 28 HOH HOH . N 4 HOH D 7 308 31 HOH HOH . N 4 HOH D 8 309 41 HOH HOH . N 4 HOH D 9 310 55 HOH HOH . N 4 HOH D 10 311 56 HOH HOH . N 4 HOH D 11 312 76 HOH HOH . N 4 HOH D 12 313 90 HOH HOH . N 4 HOH D 13 314 91 HOH HOH . N 4 HOH D 14 315 104 HOH HOH . N 4 HOH D 15 316 172 HOH HOH . N 4 HOH D 16 317 198 HOH HOH . N 4 HOH D 17 318 212 HOH HOH . N 4 HOH D 18 319 217 HOH HOH . N 4 HOH D 19 320 221 HOH HOH . O 4 HOH E 1 302 7 HOH HOH . O 4 HOH E 2 303 8 HOH HOH . O 4 HOH E 3 304 17 HOH HOH . O 4 HOH E 4 305 33 HOH HOH . O 4 HOH E 5 306 46 HOH HOH . O 4 HOH E 6 307 81 HOH HOH . O 4 HOH E 7 308 84 HOH HOH . O 4 HOH E 8 309 85 HOH HOH . O 4 HOH E 9 310 102 HOH HOH . O 4 HOH E 10 311 109 HOH HOH . O 4 HOH E 11 312 131 HOH HOH . O 4 HOH E 12 313 135 HOH HOH . O 4 HOH E 13 314 139 HOH HOH . O 4 HOH E 14 315 170 HOH HOH . O 4 HOH E 15 316 189 HOH HOH . O 4 HOH E 16 317 194 HOH HOH . O 4 HOH E 17 318 200 HOH HOH . O 4 HOH E 18 319 210 HOH HOH . O 4 HOH E 19 320 213 HOH HOH . O 4 HOH E 20 321 215 HOH HOH . O 4 HOH E 21 322 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GNT . A . I 2 35.926 23.32 35.331 0.5 28.8 ? C1 GNT 301 D 1 HETATM 2 C C1 GNT . B . I 2 34.272 26.835 35.835 0.5 28 ? C1 GNT 301 D 1 HETATM 3 C C2 GNT . A . I 2 35.727 22.345 36.213 0.5 28.22 ? C2 GNT 301 D 1 HETATM 4 C C2 GNT . B . I 2 34.55 27.772 36.74 0.5 27.53 ? C2 GNT 301 D 1 HETATM 5 C C3 GNT . A . I 2 35.361 22.6 37.655 0.5 28.82 ? C3 GNT 301 D 1 HETATM 6 C C3 GNT . B . I 2 35.542 27.517 37.84 0.5 28.15 ? C3 GNT 301 D 1 HETATM 7 C C4 GNT . A . I 2 35.835 23.981 38.09 0.5 28.57 ? C4 GNT 301 D 1 HETATM 8 C C4 GNT . B . I 2 35.581 26.035 38.253 0.5 28.29 ? C4 GNT 301 D 1 HETATM 9 C C41 GNT . A . I 2 35.344 25.046 37.117 0.5 29.77 ? C41 GNT 301 D 1 HETATM 10 C C41 GNT . B . I 2 35.734 25.059 37.072 0.5 29.23 ? C41 GNT 301 D 1 HETATM 11 C C42 GNT . A . I 2 35.778 24.806 35.636 0.5 29.84 ? C42 GNT 301 D 1 HETATM 12 C C42 GNT . B . I 2 34.856 25.414 35.823 0.5 29.16 ? C42 GNT 301 D 1 HETATM 13 O O5 GNT . A . I 2 33.894 25.176 37.15 0.5 30.17 ? O5 GNT 301 D 1 HETATM 14 O O5 GNT . B . I 2 37.114 24.941 36.636 0.5 29.63 ? O5 GNT 301 D 1 HETATM 15 C C6 GNT . A . I 2 32.132 25.846 35.353 0.5 29.58 ? C6 GNT 301 D 1 HETATM 16 C C6 GNT . B . I 2 38.274 24.787 34.322 0.5 29.16 ? C6 GNT 301 D 1 HETATM 17 C C7 GNT . A . I 2 31.968 26.018 33.975 0.5 28.89 ? C7 GNT 301 D 1 HETATM 18 C C7 GNT . B . I 2 37.998 24.864 32.947 0.5 28.43 ? C7 GNT 301 D 1 HETATM 19 C C8 GNT . A . I 2 33.012 25.824 33.055 0.5 29.65 ? C8 GNT 301 D 1 HETATM 20 C C8 GNT . B . I 2 36.724 25.116 32.422 0.5 28.99 ? C8 GNT 301 D 1 HETATM 21 C C9 GNT . A . I 2 35.405 25.243 32.461 0.5 29.98 ? C9 GNT 301 D 1 HETATM 22 C C9 GNT . B . I 2 34.243 25.596 32.667 0.5 29.31 ? C9 GNT 301 D 1 HETATM 23 N N10 GNT . A . I 2 36.436 26.178 32.951 0.5 30.1 ? N10 GNT 301 D 1 HETATM 24 N N10 GNT . B . I 2 33.298 24.587 33.157 0.5 29.05 ? N10 GNT 301 D 1 HETATM 25 C C11 GNT . A . I 2 37.451 25.49 33.767 0.5 29.02 ? C11 GNT 301 D 1 HETATM 26 C C11 GNT . B . I 2 32.77 24.893 34.497 0.5 28.43 ? C11 GNT 301 D 1 HETATM 27 C C12 GNT . A . I 2 37.041 25.611 35.24 0.5 29.9 ? C12 GNT 301 D 1 HETATM 28 C C12 GNT . B . I 2 33.727 24.397 35.594 0.5 28.99 ? C12 GNT 301 D 1 HETATM 29 C C13 GNT . A . I 2 33.459 25.421 35.862 0.5 30.48 ? C13 GNT 301 D 1 HETATM 30 C C13 GNT . B . I 2 37.153 24.982 35.263 0.5 29.71 ? C13 GNT 301 D 1 HETATM 31 C C14 GNT . A . I 2 34.545 25.239 34.903 0.5 29.72 ? C14 GNT 301 D 1 HETATM 32 C C14 GNT . B . I 2 35.83 25.26 34.712 0.5 29.09 ? C14 GNT 301 D 1 HETATM 33 C C15 GNT . A . I 2 34.289 25.428 33.454 0.5 29.84 ? C15 GNT 301 D 1 HETATM 34 C C15 GNT . B . I 2 35.612 25.319 33.246 0.5 29.39 ? C15 GNT 301 D 1 HETATM 35 C C16 GNT . A . I 2 30.223 24.917 36.495 0.5 30.41 ? C16 GNT 301 D 1 HETATM 36 C C16 GNT . B . I 2 40.735 24.881 34.079 0.5 31.04 ? C16 GNT 301 D 1 HETATM 37 O O17 GNT . A . I 2 31.106 26.017 36.237 0.5 30.55 ? O17 GNT 301 D 1 HETATM 38 O O17 GNT . B . I 2 39.535 24.54 34.815 0.5 30.4 ? O17 GNT 301 D 1 HETATM 39 O O18 GNT . A . I 2 33.943 22.503 37.828 0.5 29.29 ? O18 GNT 301 D 1 HETATM 40 O O18 GNT . B . I 2 36.792 27.956 37.299 0.5 28.15 ? O18 GNT 301 D 1 HETATM 41 C C19 GNT . A . I 2 37.029 26.838 31.798 0.5 29.88 ? C19 GNT 301 D 1 HETATM 42 C C19 GNT . B . I 2 32.172 24.609 32.236 0.5 29.24 ? C19 GNT 301 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 42 #