data_2PH9 # _model_server_result.job_id UA2X13fU1s8haSVGnWCukg _model_server_result.datetime_utc '2024-12-01 11:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ph9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 2PH9 # _exptl.entry_id 2PH9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PH9 _cell.length_a 143.95 _cell.length_b 145.472 _cell.length_c 143.555 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PH9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 127 1_555 A SG CYS 149 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf2 A SG CYS 199 A CYS 190 1_555 A SG CYS 200 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf3 B SG CYS 136 B CYS 127 1_555 B SG CYS 149 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? disulf ? disulf4 B SG CYS 199 B CYS 190 1_555 B SG CYS 200 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf5 C SG CYS 136 C CYS 127 1_555 C SG CYS 149 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf6 C SG CYS 199 C CYS 190 1_555 C SG CYS 200 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf7 D SG CYS 136 D CYS 127 1_555 D SG CYS 149 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf8 D SG CYS 199 D CYS 190 1_555 D SG CYS 200 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf9 E SG CYS 136 E CYS 127 1_555 E SG CYS 149 E CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf10 E SG CYS 199 E CYS 190 1_555 E SG CYS 200 E CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 282 n n O1 HO1 PG4 sing 283 n n C1 C2 PG4 sing 284 n n C1 H11 PG4 sing 285 n n C1 H12 PG4 sing 286 n n C2 O2 PG4 sing 287 n n C2 H21 PG4 sing 288 n n C2 H22 PG4 sing 289 n n O2 C3 PG4 sing 290 n n C3 C4 PG4 sing 291 n n C3 H31 PG4 sing 292 n n C3 H32 PG4 sing 293 n n C4 O3 PG4 sing 294 n n C4 H41 PG4 sing 295 n n C4 H42 PG4 sing 296 n n O3 C5 PG4 sing 297 n n C5 C6 PG4 sing 298 n n C5 H51 PG4 sing 299 n n C5 H52 PG4 sing 300 n n C6 O4 PG4 sing 301 n n C6 H61 PG4 sing 302 n n C6 H62 PG4 sing 303 n n O4 C7 PG4 sing 304 n n C7 C8 PG4 sing 305 n n C7 H71 PG4 sing 306 n n C7 H72 PG4 sing 307 n n C8 O5 PG4 sing 308 n n C8 H81 PG4 sing 309 n n C8 H82 PG4 sing 310 n n O5 HO5 PG4 sing 311 n n # _atom_sites.entry_id 2PH9 _atom_sites.fract_transf_matrix[1][1] 0.006947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GNT A 1 301 301 GNT GNT . G 3 PG4 B 1 401 401 PG4 PG8 . H 2 GNT C 1 301 301 GNT GNT . I 2 GNT D 1 301 301 GNT GNT . J 2 GNT E 1 301 301 GNT GNT . K 4 HOH A 1 302 5 HOH HOH . K 4 HOH A 2 303 9 HOH HOH . K 4 HOH A 3 304 16 HOH HOH . K 4 HOH A 4 305 19 HOH HOH . K 4 HOH A 5 306 25 HOH HOH . K 4 HOH A 6 307 30 HOH HOH . K 4 HOH A 7 308 51 HOH HOH . K 4 HOH A 8 309 54 HOH HOH . K 4 HOH A 9 310 78 HOH HOH . K 4 HOH A 10 311 80 HOH HOH . K 4 HOH A 11 312 83 HOH HOH . K 4 HOH A 12 313 93 HOH HOH . K 4 HOH A 13 314 107 HOH HOH . K 4 HOH A 14 315 137 HOH HOH . K 4 HOH A 15 316 182 HOH HOH . K 4 HOH A 16 317 196 HOH HOH . K 4 HOH A 17 318 208 HOH HOH . K 4 HOH A 18 319 226 HOH HOH . K 4 HOH A 19 320 227 HOH HOH . K 4 HOH A 20 321 228 HOH HOH . K 4 HOH A 21 322 229 HOH HOH . K 4 HOH A 22 323 230 HOH HOH . K 4 HOH A 23 324 231 HOH HOH . K 4 HOH A 24 325 232 HOH HOH . L 4 HOH B 1 402 6 HOH HOH . L 4 HOH B 2 403 24 HOH HOH . L 4 HOH B 3 404 34 HOH HOH . L 4 HOH B 4 405 38 HOH HOH . L 4 HOH B 5 406 44 HOH HOH . L 4 HOH B 6 407 50 HOH HOH . L 4 HOH B 7 408 88 HOH HOH . L 4 HOH B 8 409 100 HOH HOH . L 4 HOH B 9 410 119 HOH HOH . L 4 HOH B 10 411 123 HOH HOH . L 4 HOH B 11 412 133 HOH HOH . L 4 HOH B 12 413 201 HOH HOH . L 4 HOH B 13 414 202 HOH HOH . L 4 HOH B 14 415 203 HOH HOH . L 4 HOH B 15 416 204 HOH HOH . L 4 HOH B 16 417 207 HOH HOH . L 4 HOH B 17 418 214 HOH HOH . L 4 HOH B 18 419 219 HOH HOH . L 4 HOH B 19 420 222 HOH HOH . L 4 HOH B 20 421 223 HOH HOH . L 4 HOH B 21 422 224 HOH HOH . M 4 HOH C 1 302 2 HOH HOH . M 4 HOH C 2 303 11 HOH HOH . M 4 HOH C 3 304 13 HOH HOH . M 4 HOH C 4 305 14 HOH HOH . M 4 HOH C 5 306 15 HOH HOH . M 4 HOH C 6 307 23 HOH HOH . M 4 HOH C 7 308 32 HOH HOH . M 4 HOH C 8 309 42 HOH HOH . M 4 HOH C 9 310 47 HOH HOH . M 4 HOH C 10 311 49 HOH HOH . M 4 HOH C 11 312 63 HOH HOH . M 4 HOH C 12 313 86 HOH HOH . M 4 HOH C 13 314 120 HOH HOH . M 4 HOH C 14 315 130 HOH HOH . M 4 HOH C 15 316 149 HOH HOH . M 4 HOH C 16 317 186 HOH HOH . M 4 HOH C 17 318 190 HOH HOH . M 4 HOH C 18 319 211 HOH HOH . M 4 HOH C 19 320 225 HOH HOH . N 4 HOH D 1 302 1 HOH HOH . N 4 HOH D 2 303 20 HOH HOH . N 4 HOH D 3 304 22 HOH HOH . N 4 HOH D 4 305 26 HOH HOH . N 4 HOH D 5 306 27 HOH HOH . N 4 HOH D 6 307 28 HOH HOH . N 4 HOH D 7 308 31 HOH HOH . N 4 HOH D 8 309 41 HOH HOH . N 4 HOH D 9 310 55 HOH HOH . N 4 HOH D 10 311 56 HOH HOH . N 4 HOH D 11 312 76 HOH HOH . N 4 HOH D 12 313 90 HOH HOH . N 4 HOH D 13 314 91 HOH HOH . N 4 HOH D 14 315 104 HOH HOH . N 4 HOH D 15 316 172 HOH HOH . N 4 HOH D 16 317 198 HOH HOH . N 4 HOH D 17 318 212 HOH HOH . N 4 HOH D 18 319 217 HOH HOH . N 4 HOH D 19 320 221 HOH HOH . O 4 HOH E 1 302 7 HOH HOH . O 4 HOH E 2 303 8 HOH HOH . O 4 HOH E 3 304 17 HOH HOH . O 4 HOH E 4 305 33 HOH HOH . O 4 HOH E 5 306 46 HOH HOH . O 4 HOH E 6 307 81 HOH HOH . O 4 HOH E 7 308 84 HOH HOH . O 4 HOH E 8 309 85 HOH HOH . O 4 HOH E 9 310 102 HOH HOH . O 4 HOH E 10 311 109 HOH HOH . O 4 HOH E 11 312 131 HOH HOH . O 4 HOH E 12 313 135 HOH HOH . O 4 HOH E 13 314 139 HOH HOH . O 4 HOH E 14 315 170 HOH HOH . O 4 HOH E 15 316 189 HOH HOH . O 4 HOH E 16 317 194 HOH HOH . O 4 HOH E 17 318 200 HOH HOH . O 4 HOH E 18 319 210 HOH HOH . O 4 HOH E 19 320 213 HOH HOH . O 4 HOH E 20 321 215 HOH HOH . O 4 HOH E 21 322 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . G 3 40.551 37.194 -20.294 1 73.11 ? O1 PG4 401 B 1 HETATM 2 C C1 PG4 . . . G 3 40.24 38.569 -20.007 1 75.54 ? C1 PG4 401 B 1 HETATM 3 C C2 PG4 . . . G 3 39.486 38.73 -18.674 1 76.71 ? C2 PG4 401 B 1 HETATM 4 O O2 PG4 . . . G 3 38.264 37.965 -18.627 1 76.53 ? O2 PG4 401 B 1 HETATM 5 C C3 PG4 . . . G 3 37.133 38.725 -18.158 1 75 ? C3 PG4 401 B 1 HETATM 6 C C4 PG4 . . . G 3 35.91 37.832 -17.887 1 72.58 ? C4 PG4 401 B 1 HETATM 7 O O3 PG4 . . . G 3 35.156 38.236 -16.733 1 69.52 ? O3 PG4 401 B 1 HETATM 8 C C5 PG4 . . . G 3 34.918 37.159 -15.832 1 67.39 ? C5 PG4 401 B 1 HETATM 9 C C6 PG4 . . . G 3 35.799 37.294 -14.599 1 66.6 ? C6 PG4 401 B 1 HETATM 10 O O4 PG4 . . . G 3 36.628 36.14 -14.494 1 66.44 ? O4 PG4 401 B 1 HETATM 11 C C7 PG4 . . . G 3 37.642 36.295 -13.508 1 66.75 ? C7 PG4 401 B 1 HETATM 12 C C8 PG4 . . . G 3 39.021 36.321 -14.17 1 67.27 ? C8 PG4 401 B 1 HETATM 13 O O5 PG4 . . . G 3 39.434 37.666 -14.47 1 67.54 ? O5 PG4 401 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #