data_2PHB
#
_model_server_result.job_id            azWnvQVszbOYCbkTuFSvFA 
_model_server_result.datetime_utc      '2024-12-22 06:27:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2phb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":9000}' 
#
_entry.id    2PHB 
#
_exptl.entry_id    2PHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PHB 
_cell.length_a            56.483 
_cell.length_b            72.406 
_cell.length_c            77.715 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 45 B CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? 
disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
disulf ? disulf6 B SG CYS 2 B CYS 1 1_555 B SG CYS 13 B CYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
disulf ? disulf7 B SG CYS 9 B CYS 8 1_555 B SG CYS 22 B CYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
disulf ? disulf8 B SG CYS 24 B CYS 23 1_555 B SG CYS 37 B CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc4 A OE1 GLU 66 A GLU 80 1_555 C CA CA . A CA 9000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 C CA CA . A CA 9000 1_555 E O HOH . A HOH 9038 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2PHB 
_atom_sites.fract_transf_matrix[1][1]    0.017704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 9000 9000 CA CA . 
D 4 230 A 1 9001 9001 230 230 . 
E 5 HOH A 1 9002 2 HOH HOH . 
E 5 HOH A 2 9003 3 HOH HOH . 
E 5 HOH A 3 9004 4 HOH HOH . 
E 5 HOH A 4 9005 5 HOH HOH . 
E 5 HOH A 5 9006 6 HOH HOH . 
E 5 HOH A 6 9007 8 HOH HOH . 
E 5 HOH A 7 9008 9 HOH HOH . 
E 5 HOH A 8 9009 10 HOH HOH . 
E 5 HOH A 9 9010 11 HOH HOH . 
E 5 HOH A 10 9011 12 HOH HOH . 
E 5 HOH A 11 9012 13 HOH HOH . 
E 5 HOH A 12 9013 14 HOH HOH . 
E 5 HOH A 13 9014 16 HOH HOH . 
E 5 HOH A 14 9015 18 HOH HOH . 
E 5 HOH A 15 9016 19 HOH HOH . 
E 5 HOH A 16 9017 20 HOH HOH . 
E 5 HOH A 17 9018 21 HOH HOH . 
E 5 HOH A 18 9019 22 HOH HOH . 
E 5 HOH A 19 9020 23 HOH HOH . 
E 5 HOH A 20 9021 24 HOH HOH . 
E 5 HOH A 21 9022 25 HOH HOH . 
E 5 HOH A 22 9023 26 HOH HOH . 
E 5 HOH A 23 9024 27 HOH HOH . 
E 5 HOH A 24 9025 28 HOH HOH . 
E 5 HOH A 25 9026 30 HOH HOH . 
E 5 HOH A 26 9027 31 HOH HOH . 
E 5 HOH A 27 9028 32 HOH HOH . 
E 5 HOH A 28 9029 33 HOH HOH . 
E 5 HOH A 29 9030 34 HOH HOH . 
E 5 HOH A 30 9031 35 HOH HOH . 
E 5 HOH A 31 9032 36 HOH HOH . 
E 5 HOH A 32 9033 37 HOH HOH . 
E 5 HOH A 33 9034 38 HOH HOH . 
E 5 HOH A 34 9035 39 HOH HOH . 
E 5 HOH A 35 9036 42 HOH HOH . 
E 5 HOH A 36 9037 43 HOH HOH . 
E 5 HOH A 37 9038 44 HOH HOH . 
E 5 HOH A 38 9039 46 HOH HOH . 
E 5 HOH A 39 9040 47 HOH HOH . 
E 5 HOH A 40 9041 48 HOH HOH . 
E 5 HOH A 41 9042 49 HOH HOH . 
E 5 HOH A 42 9043 1 HOH HOH . 
F 5 HOH B 1 51 7 HOH HOH . 
F 5 HOH B 2 52 15 HOH HOH . 
F 5 HOH B 3 53 17 HOH HOH . 
F 5 HOH B 4 54 29 HOH HOH . 
F 5 HOH B 5 55 40 HOH HOH . 
F 5 HOH B 6 56 41 HOH HOH . 
F 5 HOH B 7 57 45 HOH HOH . 
F 5 HOH B 8 58 50 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               13.233 
_atom_site.Cartn_y               31.193 
_atom_site.Cartn_z               30.154 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        53.87 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           9000 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#