data_2PHH
#
_model_server_result.job_id            HZT2g4VIu9ms0iJCsXCrag 
_model_server_result.datetime_utc      '2025-02-20 15:59:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2phh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":395}' 
#
_entry.id    2PHH 
#
_exptl.entry_id    2PHH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PHH 
_cell.length_a            71.7 
_cell.length_b            146.4 
_cell.length_c            89.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PHH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 146.4 89.2 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     2PHH 
_atom_sites.fract_transf_matrix[1][1]    0.013947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006831 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011211 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 APR A 1 395 395 APR APR . 
C 3 PHB A 1 396 396 PHB PHB . 
D 4 HOH A 1 400 400 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 404 404 HOH HOH . 
D 4 HOH A 4 405 405 HOH HOH . 
D 4 HOH A 5 406 406 HOH HOH . 
D 4 HOH A 6 407 407 HOH HOH . 
D 4 HOH A 7 408 408 HOH HOH . 
D 4 HOH A 8 409 409 HOH HOH . 
D 4 HOH A 9 410 410 HOH HOH . 
D 4 HOH A 10 411 411 HOH HOH . 
D 4 HOH A 11 412 412 HOH HOH . 
D 4 HOH A 12 413 413 HOH HOH . 
D 4 HOH A 13 414 414 HOH HOH . 
D 4 HOH A 14 415 415 HOH HOH . 
D 4 HOH A 15 416 416 HOH HOH . 
D 4 HOH A 16 417 417 HOH HOH . 
D 4 HOH A 17 418 418 HOH HOH . 
D 4 HOH A 18 419 419 HOH HOH . 
D 4 HOH A 19 420 420 HOH HOH . 
D 4 HOH A 20 421 421 HOH HOH . 
D 4 HOH A 21 422 422 HOH HOH . 
D 4 HOH A 22 423 423 HOH HOH . 
D 4 HOH A 23 424 424 HOH HOH . 
D 4 HOH A 24 425 425 HOH HOH . 
D 4 HOH A 25 426 426 HOH HOH . 
D 4 HOH A 26 427 427 HOH HOH . 
D 4 HOH A 27 428 428 HOH HOH . 
D 4 HOH A 28 429 429 HOH HOH . 
D 4 HOH A 29 430 430 HOH HOH . 
D 4 HOH A 30 431 431 HOH HOH . 
D 4 HOH A 31 432 432 HOH HOH . 
D 4 HOH A 32 433 433 HOH HOH . 
D 4 HOH A 33 434 434 HOH HOH . 
D 4 HOH A 34 435 435 HOH HOH . 
D 4 HOH A 35 436 436 HOH HOH . 
D 4 HOH A 36 437 437 HOH HOH . 
D 4 HOH A 37 438 438 HOH HOH . 
D 4 HOH A 38 439 439 HOH HOH . 
D 4 HOH A 39 440 440 HOH HOH . 
D 4 HOH A 40 441 441 HOH HOH . 
D 4 HOH A 41 442 442 HOH HOH . 
D 4 HOH A 42 443 443 HOH HOH . 
D 4 HOH A 43 444 444 HOH HOH . 
D 4 HOH A 44 445 445 HOH HOH . 
D 4 HOH A 45 447 447 HOH HOH . 
D 4 HOH A 46 448 448 HOH HOH . 
D 4 HOH A 47 449 449 HOH HOH . 
D 4 HOH A 48 450 450 HOH HOH . 
D 4 HOH A 49 451 451 HOH HOH . 
D 4 HOH A 50 452 452 HOH HOH . 
D 4 HOH A 51 453 453 HOH HOH . 
D 4 HOH A 52 454 454 HOH HOH . 
D 4 HOH A 53 455 455 HOH HOH . 
D 4 HOH A 54 456 456 HOH HOH . 
D 4 HOH A 55 457 457 HOH HOH . 
D 4 HOH A 56 458 458 HOH HOH . 
D 4 HOH A 57 459 459 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . B 2 28.982 100.522 69.44 1 28.33 ? N1 APR 395 A 1 
HETATM 2 C C2 APR . . . B 2 27.742 101.093 69.148 1 25.53 ? C2 APR 395 A 1 
HETATM 3 N N3 APR . . . B 2 27.157 100.997 68.001 1 23.46 ? N3 APR 395 A 1 
HETATM 4 C C4 APR . . . B 2 27.845 100.318 67.072 1 21.46 ? C4 APR 395 A 1 
HETATM 5 C C5 APR . . . B 2 29.121 99.692 67.269 1 18.51 ? C5 APR 395 A 1 
HETATM 6 C C6 APR . . . B 2 29.693 99.83 68.514 1 23.02 ? C6 APR 395 A 1 
HETATM 7 N N6 APR . . . B 2 30.896 99.305 68.858 1 25.1 ? N6 APR 395 A 1 
HETATM 8 N N7 APR . . . B 2 29.527 99.081 66.133 1 20.26 ? N7 APR 395 A 1 
HETATM 9 C C8 APR . . . B 2 28.573 99.316 65.242 1 22.09 ? C8 APR 395 A 1 
HETATM 10 N N9 APR . . . B 2 27.543 100.077 65.77 1 20.91 ? N9 APR 395 A 1 
HETATM 11 C C1' APR . . . B 2 26.46 100.794 65.04 1 20.24 ? C1' APR 395 A 1 
HETATM 12 C C2' APR . . . B 2 26.832 101.277 63.647 1 21.38 ? C2' APR 395 A 1 
HETATM 13 O O2' APR . . . B 2 27.407 102.537 63.643 1 19.46 ? O2' APR 395 A 1 
HETATM 14 C C3' APR . . . B 2 25.498 101.16 62.917 1 22.3 ? C3' APR 395 A 1 
HETATM 15 O O3' APR . . . B 2 24.808 102.408 63.061 1 17.27 ? O3' APR 395 A 1 
HETATM 16 O O4' APR . . . B 2 25.379 99.905 64.943 1 23.23 ? O4' APR 395 A 1 
HETATM 17 C C4' APR . . . B 2 24.705 100.047 63.665 1 24.88 ? C4' APR 395 A 1 
HETATM 18 C C5' APR . . . B 2 24.652 98.705 62.938 1 27.28 ? C5' APR 395 A 1 
HETATM 19 O O5' APR . . . B 2 23.812 98.912 61.749 1 25.69 ? O5' APR 395 A 1 
HETATM 20 P PA APR . . . B 2 23.517 97.853 60.638 1 33.27 ? PA APR 395 A 1 
HETATM 21 O O1A APR . . . B 2 24.627 96.92 60.133 1 29.58 ? O1A APR 395 A 1 
HETATM 22 O O2A APR . . . B 2 22.628 98.446 59.529 1 30.43 ? O2A APR 395 A 1 
HETATM 23 O O3A APR . . . B 2 22.457 96.905 61.451 1 27.13 ? O3A APR 395 A 1 
HETATM 24 P PB APR . . . B 2 21.193 95.87 61.585 1 21.73 ? PB APR 395 A 1 
HETATM 25 O O1B APR . . . B 2 20.08 96.625 62.267 1 28.65 ? O1B APR 395 A 1 
HETATM 26 O O2B APR . . . B 2 21.754 94.654 62.279 1 24.71 ? O2B APR 395 A 1 
HETATM 27 O O5D APR . . . B 2 21.003 95.69 60.009 1 32.01 ? O5D APR 395 A 1 
HETATM 28 C C5D APR . . . B 2 20.387 96.365 59.01 1 41.11 ? C5D APR 395 A 1 
HETATM 29 O O4D APR . . . B 2 21.784 96.105 57.023 1 51.77 ? O4D APR 395 A 1 
HETATM 30 O O1D APR . . . B 2 23.644 94.691 56.619 1 54.12 ? O1D APR 395 A 1 
HETATM 31 C C1D APR . . . B 2 22.238 94.851 56.484 1 48.36 ? C1D APR 395 A 1 
HETATM 32 O O2D APR . . . B 2 21.473 92.523 56.639 1 55.84 ? O2D APR 395 A 1 
HETATM 33 C C2D APR . . . B 2 21.464 93.797 57.273 1 52.5 ? C2D APR 395 A 1 
HETATM 34 O O3D APR . . . B 2 19.43 94.291 56.044 1 52.85 ? O3D APR 395 A 1 
HETATM 35 C C3D APR . . . B 2 20.077 94.446 57.308 1 53.43 ? C3D APR 395 A 1 
HETATM 36 C C4D APR . . . B 2 20.438 95.932 57.533 1 53.42 ? C4D APR 395 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#