data_2PHI # _model_server_result.job_id L_S1LCo_aQf0zf7QW-pCDA _model_server_result.datetime_utc '2025-09-12 12:31:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2phi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":125}' # _entry.id 2PHI # _exptl.entry_id 2PHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PHI _cell.length_a 79.88 _cell.length_b 65.23 _cell.length_c 52.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 A SG CYS 27 A CYS 27 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 29 A CYS 29 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 44 A CYS 44 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 51 A CYS 51 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 A SG CYS 61 A CYS 61 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf7 A SG CYS 84 A CYS 84 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf8 B SG CYS 11 B CYS 11 1_555 B SG CYS 77 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf9 B SG CYS 27 B CYS 27 1_555 B SG CYS 124 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 29 B CYS 29 1_555 B SG CYS 45 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 44 B CYS 44 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf12 B SG CYS 51 B CYS 51 1_555 B SG CYS 98 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf13 B SG CYS 61 B CYS 61 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf14 B SG CYS 84 B CYS 84 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc1 A O TYR 28 A TYR 28 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A O GLY 30 A GLY 30 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 A O GLY 32 A GLY 32 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A OD1 ASP 49 A ASP 49 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc5 A OD2 ASP 49 A ASP 49 1_555 C CA CA . A CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc6 A OE2 GLU 71 A GLU 71 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc7 A O SER 72 A SER 72 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc8 A OE2 GLU 92 A GLU 92 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc9 C CA CA . A CA 125 1_555 F O HOH . A HOH 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc10 C CA CA . A CA 125 1_555 F O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B O TYR 28 B TYR 28 1_555 E CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc12 B O GLY 30 B GLY 30 1_555 E CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc13 B O GLY 32 B GLY 32 1_555 E CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc14 B OD1 ASP 49 B ASP 49 1_555 E CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc15 B OD2 ASP 49 B ASP 49 1_555 E CA CA . B CA 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc16 B OE2 GLU 71 B GLU 71 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc17 B O SER 72 B SER 72 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc18 B OE2 GLU 92 B GLU 92 1_555 D CA CA . B CA 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc19 E CA CA . B CA 126 1_555 G O HOH . B HOH 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc20 E CA CA . B CA 126 1_555 G O HOH . B HOH 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PHI _atom_sites.fract_transf_matrix[1][1] 0.012519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 125 125 CA CA . D 2 CA B 1 125 125 CA CA . E 2 CA B 1 126 1 CA CA . F 3 HOH A 1 126 2 HOH HOH . F 3 HOH A 2 127 3 HOH HOH . F 3 HOH A 3 128 13 HOH HOH . F 3 HOH A 4 129 14 HOH HOH . F 3 HOH A 5 130 16 HOH HOH . F 3 HOH A 6 131 17 HOH HOH . F 3 HOH A 7 132 18 HOH HOH . F 3 HOH A 8 133 19 HOH HOH . F 3 HOH A 9 134 21 HOH HOH . F 3 HOH A 10 135 23 HOH HOH . F 3 HOH A 11 136 24 HOH HOH . F 3 HOH A 12 137 25 HOH HOH . F 3 HOH A 13 138 31 HOH HOH . F 3 HOH A 14 139 36 HOH HOH . F 3 HOH A 15 140 37 HOH HOH . F 3 HOH A 16 141 39 HOH HOH . F 3 HOH A 17 142 43 HOH HOH . F 3 HOH A 18 143 46 HOH HOH . F 3 HOH A 19 144 48 HOH HOH . F 3 HOH A 20 145 49 HOH HOH . F 3 HOH A 21 146 51 HOH HOH . F 3 HOH A 22 147 52 HOH HOH . F 3 HOH A 23 148 53 HOH HOH . F 3 HOH A 24 149 54 HOH HOH . F 3 HOH A 25 150 56 HOH HOH . F 3 HOH A 26 151 59 HOH HOH . F 3 HOH A 27 152 60 HOH HOH . F 3 HOH A 28 153 61 HOH HOH . F 3 HOH A 29 154 62 HOH HOH . F 3 HOH A 30 155 63 HOH HOH . F 3 HOH A 31 156 64 HOH HOH . F 3 HOH A 32 157 65 HOH HOH . F 3 HOH A 33 158 68 HOH HOH . F 3 HOH A 34 159 73 HOH HOH . F 3 HOH A 35 160 74 HOH HOH . F 3 HOH A 36 161 78 HOH HOH . F 3 HOH A 37 162 80 HOH HOH . F 3 HOH A 38 163 81 HOH HOH . F 3 HOH A 39 164 82 HOH HOH . F 3 HOH A 40 165 83 HOH HOH . F 3 HOH A 41 166 84 HOH HOH . F 3 HOH A 42 167 87 HOH HOH . F 3 HOH A 43 168 88 HOH HOH . F 3 HOH A 44 169 89 HOH HOH . F 3 HOH A 45 170 90 HOH HOH . F 3 HOH A 46 171 91 HOH HOH . F 3 HOH A 47 172 95 HOH HOH . F 3 HOH A 48 173 96 HOH HOH . F 3 HOH A 49 174 99 HOH HOH . F 3 HOH A 50 175 102 HOH HOH . F 3 HOH A 51 176 104 HOH HOH . F 3 HOH A 52 177 110 HOH HOH . F 3 HOH A 53 178 111 HOH HOH . F 3 HOH A 54 179 112 HOH HOH . F 3 HOH A 55 180 113 HOH HOH . F 3 HOH A 56 181 114 HOH HOH . F 3 HOH A 57 182 117 HOH HOH . F 3 HOH A 58 183 118 HOH HOH . F 3 HOH A 59 184 119 HOH HOH . F 3 HOH A 60 185 120 HOH HOH . F 3 HOH A 61 186 122 HOH HOH . F 3 HOH A 62 187 124 HOH HOH . F 3 HOH A 63 188 127 HOH HOH . F 3 HOH A 64 189 129 HOH HOH . F 3 HOH A 65 190 130 HOH HOH . F 3 HOH A 66 191 131 HOH HOH . F 3 HOH A 67 192 133 HOH HOH . F 3 HOH A 68 193 135 HOH HOH . F 3 HOH A 69 194 136 HOH HOH . F 3 HOH A 70 195 137 HOH HOH . F 3 HOH A 71 196 142 HOH HOH . F 3 HOH A 72 197 143 HOH HOH . F 3 HOH A 73 198 144 HOH HOH . F 3 HOH A 74 199 147 HOH HOH . F 3 HOH A 75 200 151 HOH HOH . F 3 HOH A 76 201 152 HOH HOH . F 3 HOH A 77 202 154 HOH HOH . F 3 HOH A 78 203 155 HOH HOH . F 3 HOH A 79 204 157 HOH HOH . F 3 HOH A 80 205 158 HOH HOH . F 3 HOH A 81 206 159 HOH HOH . F 3 HOH A 82 207 162 HOH HOH . F 3 HOH A 83 208 164 HOH HOH . F 3 HOH A 84 209 167 HOH HOH . F 3 HOH A 85 210 168 HOH HOH . F 3 HOH A 86 211 169 HOH HOH . F 3 HOH A 87 212 170 HOH HOH . F 3 HOH A 88 213 172 HOH HOH . F 3 HOH A 89 214 174 HOH HOH . F 3 HOH A 90 215 179 HOH HOH . F 3 HOH A 91 216 189 HOH HOH . F 3 HOH A 92 217 190 HOH HOH . F 3 HOH A 93 218 192 HOH HOH . F 3 HOH A 94 219 193 HOH HOH . F 3 HOH A 95 220 1 HOH HOH . F 3 HOH A 96 221 1 HOH HOH . G 3 HOH B 1 127 4 HOH HOH . G 3 HOH B 2 128 5 HOH HOH . G 3 HOH B 3 129 6 HOH HOH . G 3 HOH B 4 130 7 HOH HOH . G 3 HOH B 5 131 8 HOH HOH . G 3 HOH B 6 132 9 HOH HOH . G 3 HOH B 7 133 10 HOH HOH . G 3 HOH B 8 134 11 HOH HOH . G 3 HOH B 9 135 12 HOH HOH . G 3 HOH B 10 136 15 HOH HOH . G 3 HOH B 11 137 20 HOH HOH . G 3 HOH B 12 138 22 HOH HOH . G 3 HOH B 13 139 26 HOH HOH . G 3 HOH B 14 140 27 HOH HOH . G 3 HOH B 15 141 28 HOH HOH . G 3 HOH B 16 142 29 HOH HOH . G 3 HOH B 17 143 30 HOH HOH . G 3 HOH B 18 144 32 HOH HOH . G 3 HOH B 19 145 33 HOH HOH . G 3 HOH B 20 146 34 HOH HOH . G 3 HOH B 21 147 35 HOH HOH . G 3 HOH B 22 148 38 HOH HOH . G 3 HOH B 23 149 40 HOH HOH . G 3 HOH B 24 150 41 HOH HOH . G 3 HOH B 25 151 42 HOH HOH . G 3 HOH B 26 152 44 HOH HOH . G 3 HOH B 27 153 45 HOH HOH . G 3 HOH B 28 154 47 HOH HOH . G 3 HOH B 29 155 50 HOH HOH . G 3 HOH B 30 156 55 HOH HOH . G 3 HOH B 31 157 57 HOH HOH . G 3 HOH B 32 158 58 HOH HOH . G 3 HOH B 33 159 66 HOH HOH . G 3 HOH B 34 160 67 HOH HOH . G 3 HOH B 35 161 69 HOH HOH . G 3 HOH B 36 162 70 HOH HOH . G 3 HOH B 37 163 71 HOH HOH . G 3 HOH B 38 164 72 HOH HOH . G 3 HOH B 39 165 75 HOH HOH . G 3 HOH B 40 166 76 HOH HOH . G 3 HOH B 41 167 77 HOH HOH . G 3 HOH B 42 168 79 HOH HOH . G 3 HOH B 43 169 85 HOH HOH . G 3 HOH B 44 170 86 HOH HOH . G 3 HOH B 45 171 92 HOH HOH . G 3 HOH B 46 172 93 HOH HOH . G 3 HOH B 47 173 94 HOH HOH . G 3 HOH B 48 174 97 HOH HOH . G 3 HOH B 49 175 98 HOH HOH . G 3 HOH B 50 176 100 HOH HOH . G 3 HOH B 51 177 101 HOH HOH . G 3 HOH B 52 178 103 HOH HOH . G 3 HOH B 53 179 105 HOH HOH . G 3 HOH B 54 180 106 HOH HOH . G 3 HOH B 55 181 107 HOH HOH . G 3 HOH B 56 182 108 HOH HOH . G 3 HOH B 57 183 109 HOH HOH . G 3 HOH B 58 184 115 HOH HOH . G 3 HOH B 59 185 116 HOH HOH . G 3 HOH B 60 186 121 HOH HOH . G 3 HOH B 61 187 123 HOH HOH . G 3 HOH B 62 188 125 HOH HOH . G 3 HOH B 63 189 126 HOH HOH . G 3 HOH B 64 190 128 HOH HOH . G 3 HOH B 65 191 132 HOH HOH . G 3 HOH B 66 192 134 HOH HOH . G 3 HOH B 67 193 138 HOH HOH . G 3 HOH B 68 194 139 HOH HOH . G 3 HOH B 69 195 140 HOH HOH . G 3 HOH B 70 196 141 HOH HOH . G 3 HOH B 71 197 145 HOH HOH . G 3 HOH B 72 198 146 HOH HOH . G 3 HOH B 73 199 148 HOH HOH . G 3 HOH B 74 200 149 HOH HOH . G 3 HOH B 75 201 150 HOH HOH . G 3 HOH B 76 202 153 HOH HOH . G 3 HOH B 77 203 156 HOH HOH . G 3 HOH B 78 204 160 HOH HOH . G 3 HOH B 79 205 161 HOH HOH . G 3 HOH B 80 206 163 HOH HOH . G 3 HOH B 81 207 165 HOH HOH . G 3 HOH B 82 208 166 HOH HOH . G 3 HOH B 83 209 171 HOH HOH . G 3 HOH B 84 210 173 HOH HOH . G 3 HOH B 85 211 175 HOH HOH . G 3 HOH B 86 212 176 HOH HOH . G 3 HOH B 87 213 177 HOH HOH . G 3 HOH B 88 214 178 HOH HOH . G 3 HOH B 89 215 180 HOH HOH . G 3 HOH B 90 216 181 HOH HOH . G 3 HOH B 91 217 182 HOH HOH . G 3 HOH B 92 218 183 HOH HOH . G 3 HOH B 93 219 184 HOH HOH . G 3 HOH B 94 220 185 HOH HOH . G 3 HOH B 95 221 186 HOH HOH . G 3 HOH B 96 222 187 HOH HOH . G 3 HOH B 97 223 188 HOH HOH . G 3 HOH B 98 224 191 HOH HOH . G 3 HOH B 99 225 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 42.752 _atom_site.Cartn_y 16.764 _atom_site.Cartn_z 31.311 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 125 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #