data_2PHK # _model_server_result.job_id j4ZnRl70mENpzvvvZOfueA _model_server_result.datetime_utc '2024-11-28 16:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2phk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":383}' # _entry.id 2PHK # _exptl.entry_id 2PHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PHK _cell.length_a 65.3 _cell.length_b 65.3 _cell.length_c 145.8 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 97.95 56.551459 97.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 154 1_555 D MN MN . A MN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A OD1 ASP 154 A ASP 167 1_555 C MN MN . A MN 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OD2 ASP 154 A ASP 167 1_555 C MN MN . A MN 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 A OD2 ASP 154 A ASP 167 1_555 D MN MN . A MN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 E O3G ATP . A ATP 381 1_555 C MN MN . A MN 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 E O2B ATP . A ATP 381 1_555 C MN MN . A MN 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc7 E O2G ATP . A ATP 381 1_555 D MN MN . A MN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc8 E O2A ATP . A ATP 381 1_555 D MN MN . A MN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc9 E O3B ATP . A ATP 381 1_555 D MN MN . A MN 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc10 C MN MN . A MN 382 1_555 G O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc11 C MN MN . A MN 382 1_555 G O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc12 D MN MN . A MN 383 1_555 G O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PHK _atom_sites.fract_transf_matrix[1][1] 0.015314 _atom_sites.fract_transf_matrix[1][2] 0.008842 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 382 382 MN MN . D 3 MN A 1 383 383 MN MN . E 4 ATP A 1 381 381 ATP ATP . F 5 GOL A 1 384 21 GOL GOL . G 6 HOH A 1 385 1 HOH HOH . G 6 HOH A 2 386 2 HOH HOH . G 6 HOH A 3 387 3 HOH HOH . G 6 HOH A 4 388 4 HOH HOH . G 6 HOH A 5 389 5 HOH HOH . G 6 HOH A 6 390 8 HOH HOH . G 6 HOH A 7 391 9 HOH HOH . G 6 HOH A 8 392 10 HOH HOH . G 6 HOH A 9 393 11 HOH HOH . G 6 HOH A 10 394 12 HOH HOH . G 6 HOH A 11 395 13 HOH HOH . G 6 HOH A 12 396 14 HOH HOH . G 6 HOH A 13 397 15 HOH HOH . G 6 HOH A 14 398 16 HOH HOH . G 6 HOH A 15 399 17 HOH HOH . G 6 HOH A 16 400 18 HOH HOH . G 6 HOH A 17 401 19 HOH HOH . G 6 HOH A 18 402 20 HOH HOH . G 6 HOH A 19 403 21 HOH HOH . G 6 HOH A 20 404 22 HOH HOH . G 6 HOH A 21 405 23 HOH HOH . G 6 HOH A 22 406 25 HOH HOH . G 6 HOH A 23 407 26 HOH HOH . G 6 HOH A 24 408 27 HOH HOH . G 6 HOH A 25 409 28 HOH HOH . G 6 HOH A 26 410 29 HOH HOH . G 6 HOH A 27 411 30 HOH HOH . G 6 HOH A 28 412 31 HOH HOH . G 6 HOH A 29 413 32 HOH HOH . G 6 HOH A 30 414 33 HOH HOH . G 6 HOH A 31 415 34 HOH HOH . G 6 HOH A 32 416 35 HOH HOH . G 6 HOH A 33 417 36 HOH HOH . G 6 HOH A 34 418 37 HOH HOH . G 6 HOH A 35 419 38 HOH HOH . G 6 HOH A 36 420 39 HOH HOH . G 6 HOH A 37 421 40 HOH HOH . G 6 HOH A 38 422 41 HOH HOH . G 6 HOH A 39 423 42 HOH HOH . G 6 HOH A 40 424 43 HOH HOH . G 6 HOH A 41 425 44 HOH HOH . G 6 HOH A 42 426 45 HOH HOH . G 6 HOH A 43 427 46 HOH HOH . G 6 HOH A 44 428 47 HOH HOH . G 6 HOH A 45 429 48 HOH HOH . G 6 HOH A 46 430 50 HOH HOH . G 6 HOH A 47 431 51 HOH HOH . G 6 HOH A 48 432 52 HOH HOH . G 6 HOH A 49 433 53 HOH HOH . G 6 HOH A 50 434 54 HOH HOH . G 6 HOH A 51 435 55 HOH HOH . G 6 HOH A 52 436 56 HOH HOH . G 6 HOH A 53 437 57 HOH HOH . G 6 HOH A 54 438 58 HOH HOH . G 6 HOH A 55 439 59 HOH HOH . G 6 HOH A 56 440 60 HOH HOH . G 6 HOH A 57 441 61 HOH HOH . G 6 HOH A 58 442 62 HOH HOH . G 6 HOH A 59 443 63 HOH HOH . G 6 HOH A 60 444 64 HOH HOH . G 6 HOH A 61 445 65 HOH HOH . G 6 HOH A 62 446 66 HOH HOH . G 6 HOH A 63 447 67 HOH HOH . G 6 HOH A 64 448 68 HOH HOH . G 6 HOH A 65 449 69 HOH HOH . G 6 HOH A 66 450 70 HOH HOH . G 6 HOH A 67 451 71 HOH HOH . G 6 HOH A 68 452 72 HOH HOH . G 6 HOH A 69 453 73 HOH HOH . G 6 HOH A 70 454 74 HOH HOH . G 6 HOH A 71 455 75 HOH HOH . G 6 HOH A 72 456 76 HOH HOH . G 6 HOH A 73 457 77 HOH HOH . G 6 HOH A 74 458 79 HOH HOH . G 6 HOH A 75 459 80 HOH HOH . G 6 HOH A 76 460 81 HOH HOH . G 6 HOH A 77 461 82 HOH HOH . G 6 HOH A 78 462 83 HOH HOH . G 6 HOH A 79 463 84 HOH HOH . G 6 HOH A 80 464 85 HOH HOH . G 6 HOH A 81 465 86 HOH HOH . G 6 HOH A 82 466 87 HOH HOH . G 6 HOH A 83 467 88 HOH HOH . H 6 HOH B 1 24 24 HOH HOH . H 6 HOH B 2 49 49 HOH HOH . H 6 HOH B 3 78 78 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 46.375 _atom_site.Cartn_y 14.218 _atom_site.Cartn_z 47.421 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 383 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #