data_2PID # _model_server_result.job_id 2gKVDGcZJGXkGqhAfjY3AA _model_server_result.datetime_utc '2024-10-18 17:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":384}' # _entry.id 2PID # _exptl.entry_id 2PID _exptl.method 'X-RAY DIFFRACTION' # _entity.details "5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE" _entity.formula_weight 509.493 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PID _cell.length_a 54 _cell.length_b 62.4 _cell.length_c 194.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PID _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H23 N7 O8 S' _chem_comp.formula_weight 509.493 _chem_comp.id YSA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms TYROSYLADENYLATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CD1 CE1 YSA doub 376 n y CD1 CG YSA sing 377 n y CD1 HD1 YSA sing 378 n n CE1 CZ YSA sing 379 n y CE1 HE1 YSA sing 380 n n CZ OH YSA sing 381 n n CZ CE2 YSA doub 382 n y OH HOH YSA sing 383 n n CE2 CD2 YSA sing 384 n y CE2 HE2 YSA sing 385 n n CD2 CG YSA doub 386 n y CD2 HD2 YSA sing 387 n n CG CB YSA sing 388 n n CB CA YSA sing 389 n n CB HB1 YSA sing 390 n n CB HB2 YSA sing 391 n n CA N YSA sing 392 n n CA C YSA sing 393 n n CA HA YSA sing 394 n n N HN1 YSA sing 395 n n N HN2 YSA sing 396 n n C O YSA doub 397 n n C NAT YSA sing 398 n n NAT SBI YSA sing 399 n n NAT HAT YSA sing 400 n n SBI OAD YSA doub 401 n n SBI OAE YSA doub 402 n n SBI O5' YSA sing 403 n n O5' C5' YSA sing 404 n n C5' C4' YSA sing 405 n n C5' "H5'1" YSA sing 406 n n C5' "H5'2" YSA sing 407 n n C4' O4' YSA sing 408 n n C4' C3' YSA sing 409 n n C4' H4' YSA sing 410 n n O4' C1' YSA sing 411 n n C3' O3' YSA sing 412 n n C3' C2' YSA sing 413 n n C3' H3' YSA sing 414 n n O3' H3 YSA sing 415 n n C2' O2' YSA sing 416 n n C2' C1' YSA sing 417 n n C2' H2' YSA sing 418 n n O2' H1 YSA sing 419 n n C1' N9 YSA sing 420 n n C1' H1' YSA sing 421 n n N9 C8 YSA sing 422 n y N9 C4 YSA sing 423 n y C8 N7 YSA doub 424 n y C8 H8 YSA sing 425 n n N7 C5 YSA sing 426 n y C5 C4 YSA doub 427 n y C5 C6 YSA sing 428 n y C4 N3 YSA sing 429 n y N3 C2 YSA doub 430 n y C2 N1 YSA sing 431 n y C2 H2 YSA sing 432 n n N1 C6 YSA doub 433 n y C6 N6 YSA sing 434 n n N6 HN61 YSA sing 435 n n N6 HN62 YSA sing 436 n n # _atom_sites.entry_id 2PID _atom_sites.fract_transf_matrix[1][1] 0.018519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YSA A 1 384 1 YSA YSA . D 2 YSA B 1 384 1 YSA YSA . E 3 HOH A 1 385 1 HOH HOH . E 3 HOH A 2 386 2 HOH HOH . E 3 HOH A 3 387 4 HOH HOH . E 3 HOH A 4 388 5 HOH HOH . E 3 HOH A 5 389 6 HOH HOH . E 3 HOH A 6 390 7 HOH HOH . E 3 HOH A 7 391 8 HOH HOH . E 3 HOH A 8 392 9 HOH HOH . E 3 HOH A 9 393 10 HOH HOH . E 3 HOH A 10 394 11 HOH HOH . E 3 HOH A 11 395 13 HOH HOH . E 3 HOH A 12 396 14 HOH HOH . E 3 HOH A 13 397 15 HOH HOH . E 3 HOH A 14 398 22 HOH HOH . E 3 HOH A 15 399 23 HOH HOH . E 3 HOH A 16 400 26 HOH HOH . E 3 HOH A 17 401 27 HOH HOH . E 3 HOH A 18 402 28 HOH HOH . E 3 HOH A 19 403 30 HOH HOH . E 3 HOH A 20 404 31 HOH HOH . E 3 HOH A 21 405 36 HOH HOH . E 3 HOH A 22 406 37 HOH HOH . E 3 HOH A 23 407 40 HOH HOH . E 3 HOH A 24 408 41 HOH HOH . E 3 HOH A 25 409 42 HOH HOH . E 3 HOH A 26 410 54 HOH HOH . E 3 HOH A 27 411 55 HOH HOH . E 3 HOH A 28 412 67 HOH HOH . E 3 HOH A 29 413 68 HOH HOH . E 3 HOH A 30 414 69 HOH HOH . E 3 HOH A 31 415 70 HOH HOH . E 3 HOH A 32 416 71 HOH HOH . E 3 HOH A 33 417 72 HOH HOH . E 3 HOH A 34 418 73 HOH HOH . E 3 HOH A 35 419 74 HOH HOH . E 3 HOH A 36 420 75 HOH HOH . E 3 HOH A 37 421 76 HOH HOH . E 3 HOH A 38 422 77 HOH HOH . E 3 HOH A 39 423 78 HOH HOH . E 3 HOH A 40 424 79 HOH HOH . E 3 HOH A 41 425 80 HOH HOH . E 3 HOH A 42 426 89 HOH HOH . F 3 HOH B 1 385 3 HOH HOH . F 3 HOH B 2 386 12 HOH HOH . F 3 HOH B 3 387 16 HOH HOH . F 3 HOH B 4 388 17 HOH HOH . F 3 HOH B 5 389 18 HOH HOH . F 3 HOH B 6 390 19 HOH HOH . F 3 HOH B 7 391 20 HOH HOH . F 3 HOH B 8 392 21 HOH HOH . F 3 HOH B 9 393 24 HOH HOH . F 3 HOH B 10 394 25 HOH HOH . F 3 HOH B 11 395 29 HOH HOH . F 3 HOH B 12 396 32 HOH HOH . F 3 HOH B 13 397 33 HOH HOH . F 3 HOH B 14 398 34 HOH HOH . F 3 HOH B 15 399 35 HOH HOH . F 3 HOH B 16 400 38 HOH HOH . F 3 HOH B 17 401 39 HOH HOH . F 3 HOH B 18 402 43 HOH HOH . F 3 HOH B 19 403 44 HOH HOH . F 3 HOH B 20 404 45 HOH HOH . F 3 HOH B 21 405 46 HOH HOH . F 3 HOH B 22 406 47 HOH HOH . F 3 HOH B 23 407 48 HOH HOH . F 3 HOH B 24 408 49 HOH HOH . F 3 HOH B 25 409 50 HOH HOH . F 3 HOH B 26 410 51 HOH HOH . F 3 HOH B 27 411 52 HOH HOH . F 3 HOH B 28 412 53 HOH HOH . F 3 HOH B 29 413 56 HOH HOH . F 3 HOH B 30 414 57 HOH HOH . F 3 HOH B 31 415 58 HOH HOH . F 3 HOH B 32 416 59 HOH HOH . F 3 HOH B 33 417 60 HOH HOH . F 3 HOH B 34 418 61 HOH HOH . F 3 HOH B 35 419 62 HOH HOH . F 3 HOH B 36 420 63 HOH HOH . F 3 HOH B 37 421 64 HOH HOH . F 3 HOH B 38 422 65 HOH HOH . F 3 HOH B 39 423 66 HOH HOH . F 3 HOH B 40 424 81 HOH HOH . F 3 HOH B 41 425 82 HOH HOH . F 3 HOH B 42 426 83 HOH HOH . F 3 HOH B 43 427 84 HOH HOH . F 3 HOH B 44 428 85 HOH HOH . F 3 HOH B 45 429 86 HOH HOH . F 3 HOH B 46 430 87 HOH HOH . F 3 HOH B 47 431 88 HOH HOH . F 3 HOH B 48 432 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CD1 YSA . . . C 2 4.17 -0.178 27.904 1 21.34 ? CD1 YSA 384 A 1 HETATM 2 C CE1 YSA . . . C 2 5.534 -0.39 28.066 1 25.45 ? CE1 YSA 384 A 1 HETATM 3 C CZ YSA . . . C 2 6.438 0.254 27.227 1 22.02 ? CZ YSA 384 A 1 HETATM 4 O OH YSA . . . C 2 7.768 -0.001 27.347 1 29.1 ? OH YSA 384 A 1 HETATM 5 C CE2 YSA . . . C 2 5.975 1.116 26.239 1 25.64 ? CE2 YSA 384 A 1 HETATM 6 C CD2 YSA . . . C 2 4.61 1.332 26.081 1 20.47 ? CD2 YSA 384 A 1 HETATM 7 C CG YSA . . . C 2 3.706 0.679 26.911 1 28.48 ? CG YSA 384 A 1 HETATM 8 C CB YSA . . . C 2 2.198 0.831 26.704 1 23.24 ? CB YSA 384 A 1 HETATM 9 C CA YSA . . . C 2 1.714 2.283 26.727 1 35.36 ? CA YSA 384 A 1 HETATM 10 N N YSA . . . C 2 2.151 2.952 27.962 1 31.78 ? N YSA 384 A 1 HETATM 11 C C YSA . . . C 2 0.186 2.266 26.651 1 42.12 ? C YSA 384 A 1 HETATM 12 O O YSA . . . C 2 -0.467 2.117 27.683 1 59.23 ? O YSA 384 A 1 HETATM 13 N NAT YSA . . . C 2 -0.37 2.404 25.451 1 38.1 ? NAT YSA 384 A 1 HETATM 14 S SBI YSA . . . C 2 -1.898 1.827 25.367 1 35.76 ? SBI YSA 384 A 1 HETATM 15 O OAD YSA . . . C 2 -3.036 2.738 25.716 1 47.53 ? OAD YSA 384 A 1 HETATM 16 O OAE YSA . . . C 2 -2.048 0.344 25.543 1 33.69 ? OAE YSA 384 A 1 HETATM 17 O O5' YSA . . . C 2 -2.027 1.829 23.945 1 42.75 ? O5' YSA 384 A 1 HETATM 18 C C5' YSA . . . C 2 -1.703 3.044 23.278 1 43.85 ? C5' YSA 384 A 1 HETATM 19 C C4' YSA . . . C 2 -0.635 2.855 22.201 1 38.9 ? C4' YSA 384 A 1 HETATM 20 O O4' YSA . . . C 2 -1.282 3.117 20.944 1 35.03 ? O4' YSA 384 A 1 HETATM 21 C C3' YSA . . . C 2 0.209 4.107 22.44 1 33.63 ? C3' YSA 384 A 1 HETATM 22 O O3' YSA . . . C 2 1.252 4.211 21.468 1 29.66 ? O3' YSA 384 A 1 HETATM 23 C C2' YSA . . . C 2 -0.9 5.118 22.167 1 31.46 ? C2' YSA 384 A 1 HETATM 24 O O2' YSA . . . C 2 -0.332 6.41 21.955 1 44.95 ? O2' YSA 384 A 1 HETATM 25 C C1' YSA . . . C 2 -1.467 4.543 20.866 1 33.83 ? C1' YSA 384 A 1 HETATM 26 N N9 YSA . . . C 2 -2.893 4.924 20.767 1 34.62 ? N9 YSA 384 A 1 HETATM 27 C C8 YSA . . . C 2 -3.856 4.586 21.623 1 37.21 ? C8 YSA 384 A 1 HETATM 28 N N7 YSA . . . C 2 -5.003 5.163 21.269 1 34.51 ? N7 YSA 384 A 1 HETATM 29 C C5 YSA . . . C 2 -4.769 5.875 20.171 1 33.14 ? C5 YSA 384 A 1 HETATM 30 C C4 YSA . . . C 2 -3.428 5.72 19.848 1 31.27 ? C4 YSA 384 A 1 HETATM 31 N N3 YSA . . . C 2 -2.931 6.349 18.774 1 31.34 ? N3 YSA 384 A 1 HETATM 32 C C2 YSA . . . C 2 -3.712 7.112 18.03 1 34.93 ? C2 YSA 384 A 1 HETATM 33 N N1 YSA . . . C 2 -4.992 7.287 18.308 1 32.43 ? N1 YSA 384 A 1 HETATM 34 C C6 YSA . . . C 2 -5.557 6.689 19.367 1 30.83 ? C6 YSA 384 A 1 HETATM 35 N N6 YSA . . . C 2 -6.843 6.876 19.652 1 29.04 ? N6 YSA 384 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #