data_2PIL # _model_server_result.job_id H5qdf-_NFeO8xwTCqYRSDw _model_server_result.datetime_utc '2025-02-26 12:22:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":162}' # _entry.id 2PIL # _exptl.entry_id 2PIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 148.2 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEPTANE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PIL _cell.length_a 127.58 _cell.length_b 121.08 _cell.length_c 26.86 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLA _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 161 NAG 2 n B GLA 2 B 2 GLA ? 160 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 121 A CYS 121 1_555 A SG CYS 151 A CYS 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A C MEA 1 A MEA 1 1_555 A N THR 2 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale2 A OG SER 63 A SER 63 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale3 A C ALA 67 A ALA 67 1_555 A N SEP 68 A SEP 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale4 A C SEP 68 A SEP 68 1_555 A N PRO 69 A PRO 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale5 B O3 NAG . B NAG 1 1_555 B C1 GLA . B GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? metalc ? metalc1 A NE2 HIS 54 A HIS 54 4_566 C PT PT . A PT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.331 ? metalc ? metalc2 A NE2 HIS 54 A HIS 54 1_555 C PT PT . A PT 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.331 ? metalc ? metalc3 C PT PT . A PT 200 1_555 E O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 C PT PT . A PT 200 1_555 E O HOH . A HOH 333 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 C PT PT . A PT 200 1_555 E O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc6 C PT PT . A PT 200 1_555 E O HOH . A HOH 810 4_566 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C7 H16 O3' _chem_comp.formula_weight 148.2 _chem_comp.id HTO _chem_comp.mon_nstd_flag . _chem_comp.name HEPTANE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HTO sing 176 n n C1 C2 HTO sing 177 n n C1 H11 HTO sing 178 n n C1 H12 HTO sing 179 n n O1 HO1 HTO sing 180 n n C2 O2 HTO sing 181 n n C2 C3 HTO sing 182 n n C2 H2 HTO sing 183 n n O2 HO2 HTO sing 184 n n C3 O3 HTO sing 185 n n C3 C4 HTO sing 186 n n C3 H3 HTO sing 187 n n O3 HO3 HTO sing 188 n n C4 C5 HTO sing 189 n n C4 H41 HTO sing 190 n n C4 H42 HTO sing 191 n n C5 C6 HTO sing 192 n n C5 H51 HTO sing 193 n n C5 H52 HTO sing 194 n n C6 C7 HTO sing 195 n n C6 H61 HTO sing 196 n n C6 H62 HTO sing 197 n n C7 H71 HTO sing 198 n n C7 H72 HTO sing 199 n n C7 H73 HTO sing 200 n n # _atom_sites.entry_id 2PIL _atom_sites.fract_transf_matrix[1][1] 0.007838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PT A 1 200 200 PT PT . D 4 HTO A 1 162 162 HTO HTO . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 303 303 HOH HOH . E 5 HOH A 3 307 307 HOH HOH . E 5 HOH A 4 308 308 HOH HOH . E 5 HOH A 5 310 310 HOH HOH . E 5 HOH A 6 311 311 HOH HOH . E 5 HOH A 7 314 314 HOH HOH . E 5 HOH A 8 315 315 HOH HOH . E 5 HOH A 9 317 317 HOH HOH . E 5 HOH A 10 322 322 HOH HOH . E 5 HOH A 11 323 323 HOH HOH . E 5 HOH A 12 324 324 HOH HOH . E 5 HOH A 13 325 325 HOH HOH . E 5 HOH A 14 326 326 HOH HOH . E 5 HOH A 15 328 328 HOH HOH . E 5 HOH A 16 333 333 HOH HOH . E 5 HOH A 17 334 334 HOH HOH . E 5 HOH A 18 335 335 HOH HOH . E 5 HOH A 19 336 336 HOH HOH . E 5 HOH A 20 338 338 HOH HOH . E 5 HOH A 21 341 341 HOH HOH . E 5 HOH A 22 343 343 HOH HOH . E 5 HOH A 23 344 344 HOH HOH . E 5 HOH A 24 345 345 HOH HOH . E 5 HOH A 25 346 346 HOH HOH . E 5 HOH A 26 347 347 HOH HOH . E 5 HOH A 27 348 348 HOH HOH . E 5 HOH A 28 352 352 HOH HOH . E 5 HOH A 29 353 353 HOH HOH . E 5 HOH A 30 354 354 HOH HOH . E 5 HOH A 31 355 355 HOH HOH . E 5 HOH A 32 356 356 HOH HOH . E 5 HOH A 33 357 357 HOH HOH . E 5 HOH A 34 358 358 HOH HOH . E 5 HOH A 35 359 359 HOH HOH . E 5 HOH A 36 361 361 HOH HOH . E 5 HOH A 37 362 362 HOH HOH . E 5 HOH A 38 364 364 HOH HOH . E 5 HOH A 39 365 365 HOH HOH . E 5 HOH A 40 366 366 HOH HOH . E 5 HOH A 41 367 367 HOH HOH . E 5 HOH A 42 371 371 HOH HOH . E 5 HOH A 43 372 372 HOH HOH . E 5 HOH A 44 375 375 HOH HOH . E 5 HOH A 45 376 376 HOH HOH . E 5 HOH A 46 377 377 HOH HOH . E 5 HOH A 47 378 378 HOH HOH . E 5 HOH A 48 381 381 HOH HOH . E 5 HOH A 49 382 382 HOH HOH . E 5 HOH A 50 383 383 HOH HOH . E 5 HOH A 51 384 384 HOH HOH . E 5 HOH A 52 386 386 HOH HOH . E 5 HOH A 53 387 387 HOH HOH . E 5 HOH A 54 388 388 HOH HOH . E 5 HOH A 55 389 389 HOH HOH . E 5 HOH A 56 390 390 HOH HOH . E 5 HOH A 57 391 391 HOH HOH . E 5 HOH A 58 394 394 HOH HOH . E 5 HOH A 59 395 395 HOH HOH . E 5 HOH A 60 396 396 HOH HOH . E 5 HOH A 61 397 397 HOH HOH . E 5 HOH A 62 398 398 HOH HOH . E 5 HOH A 63 399 399 HOH HOH . E 5 HOH A 64 401 401 HOH HOH . E 5 HOH A 65 403 403 HOH HOH . E 5 HOH A 66 404 404 HOH HOH . E 5 HOH A 67 405 405 HOH HOH . E 5 HOH A 68 406 406 HOH HOH . E 5 HOH A 69 407 407 HOH HOH . E 5 HOH A 70 408 408 HOH HOH . E 5 HOH A 71 409 409 HOH HOH . E 5 HOH A 72 415 415 HOH HOH . E 5 HOH A 73 416 416 HOH HOH . E 5 HOH A 74 420 420 HOH HOH . E 5 HOH A 75 425 425 HOH HOH . E 5 HOH A 76 426 426 HOH HOH . E 5 HOH A 77 427 427 HOH HOH . E 5 HOH A 78 430 430 HOH HOH . E 5 HOH A 79 431 431 HOH HOH . E 5 HOH A 80 432 432 HOH HOH . E 5 HOH A 81 433 433 HOH HOH . E 5 HOH A 82 436 436 HOH HOH . E 5 HOH A 83 437 437 HOH HOH . E 5 HOH A 84 438 438 HOH HOH . E 5 HOH A 85 440 440 HOH HOH . E 5 HOH A 86 503 503 HOH HOH . E 5 HOH A 87 508 508 HOH HOH . E 5 HOH A 88 509 509 HOH HOH . E 5 HOH A 89 510 510 HOH HOH . E 5 HOH A 90 513 513 HOH HOH . E 5 HOH A 91 515 515 HOH HOH . E 5 HOH A 92 517 517 HOH HOH . E 5 HOH A 93 518 518 HOH HOH . E 5 HOH A 94 522 522 HOH HOH . E 5 HOH A 95 602 602 HOH HOH . E 5 HOH A 96 603 603 HOH HOH . E 5 HOH A 97 604 604 HOH HOH . E 5 HOH A 98 605 605 HOH HOH . E 5 HOH A 99 606 606 HOH HOH . E 5 HOH A 100 608 608 HOH HOH . E 5 HOH A 101 609 609 HOH HOH . E 5 HOH A 102 610 610 HOH HOH . E 5 HOH A 103 701 701 HOH HOH . E 5 HOH A 104 702 702 HOH HOH . E 5 HOH A 105 801 801 HOH HOH . E 5 HOH A 106 802 802 HOH HOH . E 5 HOH A 107 803 803 HOH HOH . E 5 HOH A 108 804 804 HOH HOH . E 5 HOH A 109 805 805 HOH HOH . E 5 HOH A 110 806 806 HOH HOH . E 5 HOH A 111 807 807 HOH HOH . E 5 HOH A 112 808 808 HOH HOH . E 5 HOH A 113 809 809 HOH HOH . E 5 HOH A 114 810 810 HOH HOH . E 5 HOH A 115 811 811 HOH HOH . E 5 HOH A 116 812 812 HOH HOH . E 5 HOH A 117 813 813 HOH HOH . E 5 HOH A 118 814 814 HOH HOH . E 5 HOH A 119 815 815 HOH HOH . E 5 HOH A 120 816 816 HOH HOH . E 5 HOH A 121 817 817 HOH HOH . E 5 HOH A 122 818 818 HOH HOH . E 5 HOH A 123 819 819 HOH HOH . E 5 HOH A 124 820 820 HOH HOH . E 5 HOH A 125 821 821 HOH HOH . E 5 HOH A 126 822 822 HOH HOH . E 5 HOH A 127 823 823 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HTO . . . D 4 64.486 -24.057 -8.633 1 100 ? C1 HTO 162 A 1 HETATM 2 O O1 HTO . . . D 4 65.724 -24.249 -9.321 1 100 ? O1 HTO 162 A 1 HETATM 3 C C2 HTO . . . D 4 64.242 -25.301 -7.728 1 99.99 ? C2 HTO 162 A 1 HETATM 4 O O2 HTO . . . D 4 65.522 -25.9 -7.447 1 99.99 ? O2 HTO 162 A 1 HETATM 5 C C3 HTO . . . D 4 63.56 -24.962 -6.335 1 99.22 ? C3 HTO 162 A 1 HETATM 6 O O3 HTO . . . D 4 62.384 -24.223 -6.655 1 98.31 ? O3 HTO 162 A 1 HETATM 7 C C4 HTO . . . D 4 64.437 -24.184 -5.358 1 94.5 ? C4 HTO 162 A 1 HETATM 8 C C5 HTO . . . D 4 63.795 -23.932 -4.001 1 89.92 ? C5 HTO 162 A 1 HETATM 9 C C6 HTO . . . D 4 64.687 -23.032 -3.177 1 87.1 ? C6 HTO 162 A 1 HETATM 10 C C7 HTO . . . D 4 64.057 -22.812 -1.809 1 84.44 ? C7 HTO 162 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 542 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #