data_2PIV # _model_server_result.job_id NF7rItZxC9ioxXD57OQmGQ _model_server_result.datetime_utc '2024-11-26 00:19:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2piv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":933}' # _entry.id 2PIV # _exptl.entry_id 2PIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PIV _cell.length_a 56.4 _cell.length_b 66.02 _cell.length_c 72.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 348 n y C1 C11 T3 sing 349 n y C1 C13 T3 sing 350 n n C2 C4 T3 doub 351 n y C2 C12 T3 sing 352 n y C2 O2 T3 sing 353 n n C3 C5 T3 sing 354 n y C3 HC3 T3 sing 355 n n C4 C6 T3 sing 356 n y C4 HC4 T3 sing 357 n n C5 C7 T3 doub 358 n y C5 I1 T3 sing 359 n n C6 C8 T3 doub 360 n y C6 I2 T3 sing 361 n n C7 C9 T3 sing 362 n y C7 O2 T3 sing 363 n n C8 C10 T3 sing 364 n y C8 O1 T3 sing 365 n n C9 C11 T3 doub 366 n y C9 I3 T3 sing 367 n n C10 C12 T3 doub 368 n y C10 HC10 T3 sing 369 n n C11 HC11 T3 sing 370 n n C12 HC12 T3 sing 371 n n C13 CA T3 sing 372 n n C13 H131 T3 sing 373 n n C13 H132 T3 sing 374 n n CA C T3 sing 375 n n CA N T3 sing 376 n n CA HA T3 sing 377 n n C OXT T3 sing 378 n n C O T3 doub 379 n n N H2 T3 sing 380 n n N H T3 sing 381 n n O1 HO1 T3 sing 382 n n OXT HXT T3 sing 383 n n # _atom_sites.entry_id 2PIV _atom_sites.fract_transf_matrix[1][1] 0.01773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015147 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013755 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 932 932 SO4 SO4 . C 3 DHT A 1 931 931 DHT DHT . D 4 T3 A 1 933 1 T3 T3 . E 5 HOH A 1 934 1 HOH TIP . E 5 HOH A 2 935 2 HOH TIP . E 5 HOH A 3 936 3 HOH TIP . E 5 HOH A 4 937 4 HOH TIP . E 5 HOH A 5 938 5 HOH TIP . E 5 HOH A 6 939 6 HOH TIP . E 5 HOH A 7 940 7 HOH TIP . E 5 HOH A 8 941 8 HOH TIP . E 5 HOH A 9 942 9 HOH TIP . E 5 HOH A 10 943 10 HOH TIP . E 5 HOH A 11 944 11 HOH TIP . E 5 HOH A 12 945 12 HOH TIP . E 5 HOH A 13 946 13 HOH TIP . E 5 HOH A 14 947 14 HOH TIP . E 5 HOH A 15 948 15 HOH TIP . E 5 HOH A 16 949 16 HOH TIP . E 5 HOH A 17 950 17 HOH TIP . E 5 HOH A 18 951 18 HOH TIP . E 5 HOH A 19 952 19 HOH TIP . E 5 HOH A 20 953 20 HOH TIP . E 5 HOH A 21 954 21 HOH TIP . E 5 HOH A 22 955 22 HOH TIP . E 5 HOH A 23 956 23 HOH TIP . E 5 HOH A 24 957 24 HOH TIP . E 5 HOH A 25 958 25 HOH TIP . E 5 HOH A 26 959 26 HOH TIP . E 5 HOH A 27 960 27 HOH TIP . E 5 HOH A 28 961 28 HOH TIP . E 5 HOH A 29 962 29 HOH TIP . E 5 HOH A 30 963 30 HOH TIP . E 5 HOH A 31 964 31 HOH TIP . E 5 HOH A 32 965 32 HOH TIP . E 5 HOH A 33 966 33 HOH TIP . E 5 HOH A 34 967 34 HOH TIP . E 5 HOH A 35 968 35 HOH TIP . E 5 HOH A 36 969 36 HOH TIP . E 5 HOH A 37 970 37 HOH TIP . E 5 HOH A 38 971 38 HOH TIP . E 5 HOH A 39 972 39 HOH TIP . E 5 HOH A 40 973 41 HOH TIP . E 5 HOH A 41 974 42 HOH TIP . E 5 HOH A 42 975 43 HOH TIP . E 5 HOH A 43 976 44 HOH TIP . E 5 HOH A 44 977 45 HOH TIP . E 5 HOH A 45 978 46 HOH TIP . E 5 HOH A 46 979 47 HOH TIP . E 5 HOH A 47 980 48 HOH TIP . E 5 HOH A 48 981 49 HOH TIP . E 5 HOH A 49 982 50 HOH TIP . E 5 HOH A 50 983 51 HOH TIP . E 5 HOH A 51 984 52 HOH TIP . E 5 HOH A 52 985 53 HOH TIP . E 5 HOH A 53 986 54 HOH TIP . E 5 HOH A 54 987 55 HOH TIP . E 5 HOH A 55 988 56 HOH TIP . E 5 HOH A 56 989 57 HOH TIP . E 5 HOH A 57 990 58 HOH TIP . E 5 HOH A 58 991 59 HOH TIP . E 5 HOH A 59 992 60 HOH TIP . E 5 HOH A 60 993 61 HOH TIP . E 5 HOH A 61 994 62 HOH TIP . E 5 HOH A 62 995 63 HOH TIP . E 5 HOH A 63 996 64 HOH TIP . E 5 HOH A 64 997 65 HOH TIP . E 5 HOH A 65 998 66 HOH TIP . E 5 HOH A 66 999 67 HOH TIP . E 5 HOH A 67 1000 68 HOH TIP . E 5 HOH A 68 1001 69 HOH TIP . E 5 HOH A 69 1002 70 HOH TIP . E 5 HOH A 70 1003 72 HOH TIP . E 5 HOH A 71 1004 73 HOH TIP . E 5 HOH A 72 1005 74 HOH TIP . E 5 HOH A 73 1006 75 HOH TIP . E 5 HOH A 74 1007 76 HOH TIP . E 5 HOH A 75 1008 77 HOH TIP . E 5 HOH A 76 1009 78 HOH TIP . E 5 HOH A 77 1010 79 HOH TIP . E 5 HOH A 78 1011 80 HOH TIP . E 5 HOH A 79 1012 82 HOH TIP . E 5 HOH A 80 1013 83 HOH TIP . E 5 HOH A 81 1014 84 HOH TIP . E 5 HOH A 82 1015 85 HOH TIP . E 5 HOH A 83 1016 86 HOH TIP . E 5 HOH A 84 1017 87 HOH TIP . E 5 HOH A 85 1018 88 HOH TIP . E 5 HOH A 86 1019 90 HOH TIP . E 5 HOH A 87 1020 91 HOH TIP . E 5 HOH A 88 1021 92 HOH TIP . E 5 HOH A 89 1022 93 HOH TIP . E 5 HOH A 90 1023 94 HOH TIP . E 5 HOH A 91 1024 95 HOH TIP . E 5 HOH A 92 1025 96 HOH TIP . E 5 HOH A 93 1026 97 HOH TIP . E 5 HOH A 94 1027 98 HOH TIP . E 5 HOH A 95 1028 99 HOH TIP . E 5 HOH A 96 1029 100 HOH TIP . E 5 HOH A 97 1030 101 HOH TIP . E 5 HOH A 98 1031 102 HOH TIP . E 5 HOH A 99 1032 103 HOH TIP . E 5 HOH A 100 1033 104 HOH TIP . E 5 HOH A 101 1034 105 HOH TIP . E 5 HOH A 102 1035 106 HOH TIP . E 5 HOH A 103 1036 107 HOH TIP . E 5 HOH A 104 1037 108 HOH TIP . E 5 HOH A 105 1038 109 HOH TIP . E 5 HOH A 106 1039 110 HOH TIP . E 5 HOH A 107 1040 111 HOH TIP . E 5 HOH A 108 1041 112 HOH TIP . E 5 HOH A 109 1042 113 HOH TIP . E 5 HOH A 110 1043 114 HOH TIP . E 5 HOH A 111 1044 115 HOH TIP . E 5 HOH A 112 1045 116 HOH TIP . E 5 HOH A 113 1046 117 HOH TIP . E 5 HOH A 114 1047 118 HOH TIP . E 5 HOH A 115 1048 119 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . D 4 15.798 19.619 28.568 1 70.02 ? C1 T3 933 A 1 HETATM 2 C C2 T3 . . . D 4 18.751 16.299 31.201 1 75.38 ? C2 T3 933 A 1 HETATM 3 C C3 T3 . . . D 4 15.95 19.612 30.003 1 73.72 ? C3 T3 933 A 1 HETATM 4 C C4 T3 . . . D 4 19.826 17.043 30.745 1 78.65 ? C4 T3 933 A 1 HETATM 5 C C5 T3 . . . D 4 16.536 18.516 30.617 1 78.94 ? C5 T3 933 A 1 HETATM 6 C C6 T3 . . . D 4 20.961 17.175 31.482 1 81.47 ? C6 T3 933 A 1 HETATM 7 C C7 T3 . . . D 4 17 17.409 29.853 1 77.41 ? C7 T3 933 A 1 HETATM 8 C C8 T3 . . . D 4 21.062 16.513 32.741 1 80.18 ? C8 T3 933 A 1 HETATM 9 C C9 T3 . . . D 4 16.843 17.446 28.432 1 76.92 ? C9 T3 933 A 1 HETATM 10 C C10 T3 . . . D 4 19.972 15.74 33.227 1 75.08 ? C10 T3 933 A 1 HETATM 11 C C11 T3 . . . D 4 16.232 18.586 27.794 1 72.2 ? C11 T3 933 A 1 HETATM 12 C C12 T3 . . . D 4 18.805 15.63 32.442 1 73.72 ? C12 T3 933 A 1 HETATM 13 C C13 T3 . . . D 4 15.448 20.825 27.83 1 42.63 ? C13 T3 933 A 1 HETATM 14 C CA T3 . . . D 4 14.097 21.359 28.189 1 39.2 ? CA T3 933 A 1 HETATM 15 C C T3 . . . D 4 13.828 22.536 27.296 1 40.84 ? C T3 933 A 1 HETATM 16 I I1 T3 . . . D 4 16.695 18.501 32.725 1 87.85 ? I1 T3 933 A 1 HETATM 17 I I2 T3 . . . D 4 22.497 18.392 30.783 1 95.27 ? I2 T3 933 A 1 HETATM 18 I I3 T3 . . . D 4 17.509 15.798 27.281 1 79.15 ? I3 T3 933 A 1 HETATM 19 N N T3 . . . D 4 13.083 20.337 28.2 1 37.01 ? N T3 933 A 1 HETATM 20 O O1 T3 . . . D 4 22.244 16.642 33.482 1 80.67 ? O1 T3 933 A 1 HETATM 21 O O2 T3 . . . D 4 17.602 16.271 30.403 1 74.89 ? O2 T3 933 A 1 HETATM 22 O OXT T3 . . . D 4 13.009 22.359 26.284 1 40.88 ? OXT T3 933 A 1 HETATM 23 O O T3 . . . D 4 14.292 23.683 27.517 1 42.8 ? O T3 933 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #