data_2PK4 # _model_server_result.job_id m60IDzIreWtE85Q7YPlDqQ _model_server_result.datetime_utc '2025-07-01 18:56:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":100}' # _entry.id 2PK4 # _exptl.entry_id 2PK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-AMINOHEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.94 _cell.angle_gamma 90 _cell.entry_id 2PK4 _cell.length_a 42.21 _cell.length_b 35.46 _cell.length_c 25.43 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 1 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf2 A SG CYS 24 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 52 A CYS 51 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C6 H13 N O2' _chem_comp.formula_weight 131.173 _chem_comp.id ACA _chem_comp.mon_nstd_flag . _chem_comp.name '6-AMINOHEXANOIC ACID' _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms 'AMINOCAPROIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACA doub 1 n n C OXT ACA sing 2 n n C C2 ACA sing 3 n n OXT HXT ACA sing 4 n n C2 C3 ACA sing 5 n n C2 H21 ACA sing 6 n n C2 H22 ACA sing 7 n n C3 C4 ACA sing 8 n n C3 H31 ACA sing 9 n n C3 H32 ACA sing 10 n n C4 C5 ACA sing 11 n n C4 H41 ACA sing 12 n n C4 H42 ACA sing 13 n n C5 C6 ACA sing 14 n n C5 H51 ACA sing 15 n n C5 H52 ACA sing 16 n n C6 N ACA sing 17 n n C6 H61 ACA sing 18 n n C6 H62 ACA sing 19 n n N H ACA sing 20 n n N H2 ACA sing 21 n n # _atom_sites.entry_id 2PK4 _atom_sites.fract_transf_matrix[1][1] 0.023691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005443 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACA A 1 100 100 ACA ACA . C 3 HOH A 1 101 1 HOH HOH . C 3 HOH A 2 102 2 HOH HOH . C 3 HOH A 3 103 3 HOH HOH . C 3 HOH A 4 104 4 HOH HOH . C 3 HOH A 5 105 5 HOH HOH . C 3 HOH A 6 106 6 HOH HOH . C 3 HOH A 7 107 7 HOH HOH . C 3 HOH A 8 108 8 HOH HOH . C 3 HOH A 9 109 9 HOH HOH . C 3 HOH A 10 110 10 HOH HOH . C 3 HOH A 11 111 11 HOH HOH . C 3 HOH A 12 112 12 HOH HOH . C 3 HOH A 13 113 13 HOH HOH . C 3 HOH A 14 114 14 HOH HOH . C 3 HOH A 15 115 15 HOH HOH . C 3 HOH A 16 116 16 HOH HOH . C 3 HOH A 17 117 17 HOH HOH . C 3 HOH A 18 118 18 HOH HOH . C 3 HOH A 19 119 19 HOH HOH . C 3 HOH A 20 120 20 HOH HOH . C 3 HOH A 21 121 21 HOH HOH . C 3 HOH A 22 122 22 HOH HOH . C 3 HOH A 23 123 23 HOH HOH . C 3 HOH A 24 124 24 HOH HOH . C 3 HOH A 25 125 25 HOH HOH . C 3 HOH A 26 126 26 HOH HOH . C 3 HOH A 27 127 27 HOH HOH . C 3 HOH A 28 128 28 HOH HOH . C 3 HOH A 29 129 29 HOH HOH . C 3 HOH A 30 130 30 HOH HOH . C 3 HOH A 31 131 31 HOH HOH . C 3 HOH A 32 132 32 HOH HOH . C 3 HOH A 33 133 33 HOH HOH . C 3 HOH A 34 134 34 HOH HOH . C 3 HOH A 35 135 35 HOH HOH . C 3 HOH A 36 136 36 HOH HOH . C 3 HOH A 37 137 37 HOH HOH . C 3 HOH A 38 138 38 HOH HOH . C 3 HOH A 39 139 39 HOH HOH . C 3 HOH A 40 140 40 HOH HOH . C 3 HOH A 41 141 41 HOH HOH . C 3 HOH A 42 142 42 HOH HOH . C 3 HOH A 43 143 43 HOH HOH . C 3 HOH A 44 144 44 HOH HOH . C 3 HOH A 45 145 45 HOH HOH . C 3 HOH A 46 146 46 HOH HOH . C 3 HOH A 47 147 47 HOH HOH . C 3 HOH A 48 148 48 HOH HOH . C 3 HOH A 49 149 49 HOH HOH . C 3 HOH A 50 150 50 HOH HOH . C 3 HOH A 51 151 51 HOH HOH . C 3 HOH A 52 152 52 HOH HOH . C 3 HOH A 53 153 53 HOH HOH . C 3 HOH A 54 154 54 HOH HOH . C 3 HOH A 55 155 55 HOH HOH . C 3 HOH A 56 156 56 HOH HOH . C 3 HOH A 57 157 57 HOH HOH . C 3 HOH A 58 158 58 HOH HOH . C 3 HOH A 59 159 59 HOH HOH . C 3 HOH A 60 160 60 HOH HOH . C 3 HOH A 61 161 61 HOH HOH . C 3 HOH A 62 162 62 HOH HOH . C 3 HOH A 63 163 63 HOH HOH . C 3 HOH A 64 164 64 HOH HOH . C 3 HOH A 65 165 65 HOH HOH . C 3 HOH A 66 166 66 HOH HOH . C 3 HOH A 67 167 67 HOH HOH . C 3 HOH A 68 168 68 HOH HOH . C 3 HOH A 69 169 69 HOH HOH . C 3 HOH A 70 170 70 HOH HOH . C 3 HOH A 71 171 71 HOH HOH . C 3 HOH A 72 172 72 HOH HOH . C 3 HOH A 73 173 73 HOH HOH . C 3 HOH A 74 174 74 HOH HOH . C 3 HOH A 75 175 75 HOH HOH . C 3 HOH A 76 176 76 HOH HOH . C 3 HOH A 77 177 77 HOH HOH . C 3 HOH A 78 178 78 HOH HOH . C 3 HOH A 79 179 79 HOH HOH . C 3 HOH A 80 180 80 HOH HOH . C 3 HOH A 81 181 81 HOH HOH . C 3 HOH A 82 182 82 HOH HOH . C 3 HOH A 83 183 83 HOH HOH . C 3 HOH A 84 184 84 HOH HOH . C 3 HOH A 85 185 85 HOH HOH . C 3 HOH A 86 186 86 HOH HOH . C 3 HOH A 87 187 87 HOH HOH . C 3 HOH A 88 188 88 HOH HOH . C 3 HOH A 89 189 89 HOH HOH . C 3 HOH A 90 190 90 HOH HOH . C 3 HOH A 91 191 91 HOH HOH . C 3 HOH A 92 192 92 HOH HOH . C 3 HOH A 93 193 93 HOH HOH . C 3 HOH A 94 194 94 HOH HOH . C 3 HOH A 95 195 95 HOH HOH . C 3 HOH A 96 196 96 HOH HOH . C 3 HOH A 97 197 97 HOH HOH . C 3 HOH A 98 198 98 HOH HOH . C 3 HOH A 99 199 99 HOH HOH . C 3 HOH A 100 200 100 HOH HOH . C 3 HOH A 101 201 101 HOH HOH . C 3 HOH A 102 202 102 HOH HOH . C 3 HOH A 103 203 103 HOH HOH . C 3 HOH A 104 204 104 HOH HOH . C 3 HOH A 105 205 105 HOH HOH . C 3 HOH A 106 206 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACA . . . B 2 0.56 -3.255 0.558 1 35 ? C ACA 100 A 1 HETATM 2 O O ACA . . . B 2 0.789 -4.438 0.901 1 35 ? O ACA 100 A 1 HETATM 3 O OXT ACA . . . B 2 -0.596 -2.8 0.249 1 35 ? OXT ACA 100 A 1 HETATM 4 C C2 ACA . . . B 2 1.46 -2.169 1.174 1 35 ? C2 ACA 100 A 1 HETATM 5 C C3 ACA . . . B 2 2.382 -1.606 0.084 1 35 ? C3 ACA 100 A 1 HETATM 6 C C4 ACA . . . B 2 3.615 -0.941 0.767 1 31.34 ? C4 ACA 100 A 1 HETATM 7 C C5 ACA . . . B 2 4.45 -0.193 -0.235 1 34.63 ? C5 ACA 100 A 1 HETATM 8 C C6 ACA . . . B 2 5.893 0.017 0.162 1 34.19 ? C6 ACA 100 A 1 HETATM 9 N N ACA . . . B 2 6.591 -1.281 0.416 1 32.55 ? N ACA 100 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #