data_2PK5
#
_model_server_result.job_id            ffhuBqhVtE243I3R4oYdLA 
_model_server_result.datetime_utc      '2024-10-19 22:21:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pk5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    2PK5 
#
_exptl.entry_id    2PK5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PK5 
_cell.length_a            58.842 
_cell.length_b            85.991 
_cell.length_c            46.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2PK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 235 n n 
C1 C2 GOL sing 236 n n 
C1 H11 GOL sing 237 n n 
C1 H12 GOL sing 238 n n 
O1 HO1 GOL sing 239 n n 
C2 O2 GOL sing 240 n n 
C2 C3 GOL sing 241 n n 
C2 H2 GOL sing 242 n n 
O2 HO2 GOL sing 243 n n 
C3 O3 GOL sing 244 n n 
C3 H31 GOL sing 245 n n 
C3 H32 GOL sing 246 n n 
O3 HO3 GOL sing 247 n n 
#
_atom_sites.entry_id                     2PK5 
_atom_sites.fract_transf_matrix[1][1]    0.016995 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011629 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 075 A 1 900 900 075 075 . 
D 3 GOL A 1 401 401 GOL GOL . 
E 4 HOH A 1 901 1 HOH HOH . 
E 4 HOH A 2 902 7 HOH HOH . 
E 4 HOH A 3 903 10 HOH HOH . 
E 4 HOH A 4 904 13 HOH HOH . 
E 4 HOH A 5 905 15 HOH HOH . 
E 4 HOH A 6 906 16 HOH HOH . 
E 4 HOH A 7 907 17 HOH HOH . 
E 4 HOH A 8 908 18 HOH HOH . 
E 4 HOH A 9 909 19 HOH HOH . 
E 4 HOH A 10 910 23 HOH HOH . 
E 4 HOH A 11 911 25 HOH HOH . 
E 4 HOH A 12 912 26 HOH HOH . 
E 4 HOH A 13 913 29 HOH HOH . 
E 4 HOH A 14 914 30 HOH HOH . 
E 4 HOH A 15 915 32 HOH HOH . 
E 4 HOH A 16 916 33 HOH HOH . 
E 4 HOH A 17 917 34 HOH HOH . 
E 4 HOH A 18 918 38 HOH HOH . 
E 4 HOH A 19 919 39 HOH HOH . 
E 4 HOH A 20 920 40 HOH HOH . 
E 4 HOH A 21 921 43 HOH HOH . 
E 4 HOH A 22 922 45 HOH HOH . 
E 4 HOH A 23 923 50 HOH HOH . 
E 4 HOH A 24 924 51 HOH HOH . 
E 4 HOH A 25 925 55 HOH HOH . 
E 4 HOH A 26 926 57 HOH HOH . 
E 4 HOH A 27 927 58 HOH HOH . 
E 4 HOH A 28 928 60 HOH HOH . 
E 4 HOH A 29 929 61 HOH HOH . 
E 4 HOH A 30 930 67 HOH HOH . 
E 4 HOH A 31 931 69 HOH HOH . 
E 4 HOH A 32 932 70 HOH HOH . 
E 4 HOH A 33 933 71 HOH HOH . 
E 4 HOH A 34 934 72 HOH HOH . 
E 4 HOH A 35 935 73 HOH HOH . 
E 4 HOH A 36 936 74 HOH HOH . 
E 4 HOH A 37 937 76 HOH HOH . 
E 4 HOH A 38 938 82 HOH HOH . 
E 4 HOH A 39 939 85 HOH HOH . 
E 4 HOH A 40 940 86 HOH HOH . 
E 4 HOH A 41 941 89 HOH HOH . 
E 4 HOH A 42 942 92 HOH HOH . 
E 4 HOH A 43 943 93 HOH HOH . 
E 4 HOH A 44 944 94 HOH HOH . 
E 4 HOH A 45 945 95 HOH HOH . 
E 4 HOH A 46 946 96 HOH HOH . 
E 4 HOH A 47 947 98 HOH HOH . 
E 4 HOH A 48 948 99 HOH HOH . 
E 4 HOH A 49 949 100 HOH HOH . 
E 4 HOH A 50 950 102 HOH HOH . 
E 4 HOH A 51 951 104 HOH HOH . 
E 4 HOH A 52 952 106 HOH HOH . 
E 4 HOH A 53 953 107 HOH HOH . 
E 4 HOH A 54 954 115 HOH HOH . 
E 4 HOH A 55 955 118 HOH HOH . 
E 4 HOH A 56 956 119 HOH HOH . 
E 4 HOH A 57 957 120 HOH HOH . 
E 4 HOH A 58 958 121 HOH HOH . 
E 4 HOH A 59 959 123 HOH HOH . 
E 4 HOH A 60 960 124 HOH HOH . 
E 4 HOH A 61 961 125 HOH HOH . 
E 4 HOH A 62 962 127 HOH HOH . 
E 4 HOH A 63 963 129 HOH HOH . 
E 4 HOH A 64 964 131 HOH HOH . 
E 4 HOH A 65 965 133 HOH HOH . 
E 4 HOH A 66 966 134 HOH HOH . 
E 4 HOH A 67 967 135 HOH HOH . 
E 4 HOH A 68 968 138 HOH HOH . 
E 4 HOH A 69 969 139 HOH HOH . 
E 4 HOH A 70 970 140 HOH HOH . 
E 4 HOH A 71 971 141 HOH HOH . 
E 4 HOH A 72 972 145 HOH HOH . 
E 4 HOH A 73 973 147 HOH HOH . 
E 4 HOH A 74 974 148 HOH HOH . 
E 4 HOH A 75 975 153 HOH HOH . 
E 4 HOH A 76 976 155 HOH HOH . 
E 4 HOH A 77 977 158 HOH HOH . 
E 4 HOH A 78 978 159 HOH HOH . 
E 4 HOH A 79 979 160 HOH HOH . 
E 4 HOH A 80 980 168 HOH HOH . 
E 4 HOH A 81 981 170 HOH HOH . 
E 4 HOH A 82 982 173 HOH HOH . 
E 4 HOH A 83 983 175 HOH HOH . 
E 4 HOH A 84 984 176 HOH HOH . 
E 4 HOH A 85 985 181 HOH HOH . 
E 4 HOH A 86 986 182 HOH HOH . 
E 4 HOH A 87 987 183 HOH HOH . 
E 4 HOH A 88 988 184 HOH HOH . 
E 4 HOH A 89 989 186 HOH HOH . 
E 4 HOH A 90 990 187 HOH HOH . 
E 4 HOH A 91 991 188 HOH HOH . 
E 4 HOH A 92 992 189 HOH HOH . 
E 4 HOH A 93 993 191 HOH HOH . 
E 4 HOH A 94 994 192 HOH HOH . 
E 4 HOH A 95 995 195 HOH HOH . 
E 4 HOH A 96 996 198 HOH HOH . 
E 4 HOH A 97 997 201 HOH HOH . 
E 4 HOH A 98 998 202 HOH HOH . 
E 4 HOH A 99 999 203 HOH HOH . 
E 4 HOH A 100 1000 205 HOH HOH . 
E 4 HOH A 101 1001 209 HOH HOH . 
E 4 HOH A 102 1002 210 HOH HOH . 
E 4 HOH A 103 1003 211 HOH HOH . 
E 4 HOH A 104 1004 212 HOH HOH . 
E 4 HOH A 105 1005 213 HOH HOH . 
E 4 HOH A 106 1006 215 HOH HOH . 
E 4 HOH A 107 1007 217 HOH HOH . 
E 4 HOH A 108 1008 222 HOH HOH . 
E 4 HOH A 109 1009 235 HOH HOH . 
E 4 HOH A 110 1010 244 HOH HOH . 
E 4 HOH A 111 1011 246 HOH HOH . 
E 4 HOH A 112 1012 254 HOH HOH . 
E 4 HOH A 113 1013 255 HOH HOH . 
E 4 HOH A 114 1014 256 HOH HOH . 
E 4 HOH A 115 1015 258 HOH HOH . 
E 4 HOH A 116 1016 260 HOH HOH . 
E 4 HOH A 117 1017 261 HOH HOH . 
E 4 HOH A 118 1018 262 HOH HOH . 
F 4 HOH B 1 100 2 HOH HOH . 
F 4 HOH B 2 101 3 HOH HOH . 
F 4 HOH B 3 102 4 HOH HOH . 
F 4 HOH B 4 103 5 HOH HOH . 
F 4 HOH B 5 104 6 HOH HOH . 
F 4 HOH B 6 105 8 HOH HOH . 
F 4 HOH B 7 106 9 HOH HOH . 
F 4 HOH B 8 107 11 HOH HOH . 
F 4 HOH B 9 108 12 HOH HOH . 
F 4 HOH B 10 109 14 HOH HOH . 
F 4 HOH B 11 110 20 HOH HOH . 
F 4 HOH B 12 111 21 HOH HOH . 
F 4 HOH B 13 112 22 HOH HOH . 
F 4 HOH B 14 113 24 HOH HOH . 
F 4 HOH B 15 114 27 HOH HOH . 
F 4 HOH B 16 115 28 HOH HOH . 
F 4 HOH B 17 116 31 HOH HOH . 
F 4 HOH B 18 117 35 HOH HOH . 
F 4 HOH B 19 118 36 HOH HOH . 
F 4 HOH B 20 119 37 HOH HOH . 
F 4 HOH B 21 120 41 HOH HOH . 
F 4 HOH B 22 121 42 HOH HOH . 
F 4 HOH B 23 122 44 HOH HOH . 
F 4 HOH B 24 123 46 HOH HOH . 
F 4 HOH B 25 124 47 HOH HOH . 
F 4 HOH B 26 125 48 HOH HOH . 
F 4 HOH B 27 126 49 HOH HOH . 
F 4 HOH B 28 127 52 HOH HOH . 
F 4 HOH B 29 128 53 HOH HOH . 
F 4 HOH B 30 129 54 HOH HOH . 
F 4 HOH B 31 130 56 HOH HOH . 
F 4 HOH B 32 131 59 HOH HOH . 
F 4 HOH B 33 132 62 HOH HOH . 
F 4 HOH B 34 133 63 HOH HOH . 
F 4 HOH B 35 134 64 HOH HOH . 
F 4 HOH B 36 135 65 HOH HOH . 
F 4 HOH B 37 136 68 HOH HOH . 
F 4 HOH B 38 137 75 HOH HOH . 
F 4 HOH B 39 138 77 HOH HOH . 
F 4 HOH B 40 139 79 HOH HOH . 
F 4 HOH B 41 140 80 HOH HOH . 
F 4 HOH B 42 141 81 HOH HOH . 
F 4 HOH B 43 142 83 HOH HOH . 
F 4 HOH B 44 143 84 HOH HOH . 
F 4 HOH B 45 144 88 HOH HOH . 
F 4 HOH B 46 145 90 HOH HOH . 
F 4 HOH B 47 146 97 HOH HOH . 
F 4 HOH B 48 147 101 HOH HOH . 
F 4 HOH B 49 148 105 HOH HOH . 
F 4 HOH B 50 149 108 HOH HOH . 
F 4 HOH B 51 150 109 HOH HOH . 
F 4 HOH B 52 151 110 HOH HOH . 
F 4 HOH B 53 152 111 HOH HOH . 
F 4 HOH B 54 153 112 HOH HOH . 
F 4 HOH B 55 154 113 HOH HOH . 
F 4 HOH B 56 155 114 HOH HOH . 
F 4 HOH B 57 156 116 HOH HOH . 
F 4 HOH B 58 157 117 HOH HOH . 
F 4 HOH B 59 158 122 HOH HOH . 
F 4 HOH B 60 159 126 HOH HOH . 
F 4 HOH B 61 160 128 HOH HOH . 
F 4 HOH B 62 161 130 HOH HOH . 
F 4 HOH B 63 162 132 HOH HOH . 
F 4 HOH B 64 163 136 HOH HOH . 
F 4 HOH B 65 164 137 HOH HOH . 
F 4 HOH B 66 165 142 HOH HOH . 
F 4 HOH B 67 166 143 HOH HOH . 
F 4 HOH B 68 167 144 HOH HOH . 
F 4 HOH B 69 168 146 HOH HOH . 
F 4 HOH B 70 169 149 HOH HOH . 
F 4 HOH B 71 170 150 HOH HOH . 
F 4 HOH B 72 171 151 HOH HOH . 
F 4 HOH B 73 172 152 HOH HOH . 
F 4 HOH B 74 173 154 HOH HOH . 
F 4 HOH B 75 174 156 HOH HOH . 
F 4 HOH B 76 175 157 HOH HOH . 
F 4 HOH B 77 176 161 HOH HOH . 
F 4 HOH B 78 177 162 HOH HOH . 
F 4 HOH B 79 178 163 HOH HOH . 
F 4 HOH B 80 179 164 HOH HOH . 
F 4 HOH B 81 180 165 HOH HOH . 
F 4 HOH B 82 181 167 HOH HOH . 
F 4 HOH B 83 182 169 HOH HOH . 
F 4 HOH B 84 183 171 HOH HOH . 
F 4 HOH B 85 184 172 HOH HOH . 
F 4 HOH B 86 185 174 HOH HOH . 
F 4 HOH B 87 186 177 HOH HOH . 
F 4 HOH B 88 187 178 HOH HOH . 
F 4 HOH B 89 188 179 HOH HOH . 
F 4 HOH B 90 189 180 HOH HOH . 
F 4 HOH B 91 190 185 HOH HOH . 
F 4 HOH B 92 191 190 HOH HOH . 
F 4 HOH B 93 192 193 HOH HOH . 
F 4 HOH B 94 193 194 HOH HOH . 
F 4 HOH B 95 194 196 HOH HOH . 
F 4 HOH B 96 195 197 HOH HOH . 
F 4 HOH B 97 196 199 HOH HOH . 
F 4 HOH B 98 197 200 HOH HOH . 
F 4 HOH B 99 198 204 HOH HOH . 
F 4 HOH B 100 199 206 HOH HOH . 
F 4 HOH B 101 200 207 HOH HOH . 
F 4 HOH B 102 201 208 HOH HOH . 
F 4 HOH B 103 202 214 HOH HOH . 
F 4 HOH B 104 203 216 HOH HOH . 
F 4 HOH B 105 204 218 HOH HOH . 
F 4 HOH B 106 205 219 HOH HOH . 
F 4 HOH B 107 206 220 HOH HOH . 
F 4 HOH B 108 207 223 HOH HOH . 
F 4 HOH B 109 208 224 HOH HOH . 
F 4 HOH B 110 209 227 HOH HOH . 
F 4 HOH B 111 210 230 HOH HOH . 
F 4 HOH B 112 211 242 HOH HOH . 
F 4 HOH B 113 212 243 HOH HOH . 
F 4 HOH B 114 213 247 HOH HOH . 
F 4 HOH B 115 214 248 HOH HOH . 
F 4 HOH B 116 215 249 HOH HOH . 
F 4 HOH B 117 216 250 HOH HOH . 
F 4 HOH B 118 217 251 HOH HOH . 
F 4 HOH B 119 218 252 HOH HOH . 
F 4 HOH B 120 219 253 HOH HOH . 
F 4 HOH B 121 220 257 HOH HOH . 
F 4 HOH B 122 221 259 HOH HOH . 
F 4 HOH B 123 222 263 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 15.31 -15.732 6.948 1 46.71 ? C1 GOL 401 A 1 
HETATM 2 O O1 GOL . . . D 3 16.662 -16.081 6.885 1 46.49 ? O1 GOL 401 A 1 
HETATM 3 C C2 GOL . . . D 3 15.286 -14.311 6.421 1 47.97 ? C2 GOL 401 A 1 
HETATM 4 O O2 GOL . . . D 3 14.754 -13.371 7.337 1 48.23 ? O2 GOL 401 A 1 
HETATM 5 C C3 GOL . . . D 3 14.507 -14.302 5.136 1 46.17 ? C3 GOL 401 A 1 
HETATM 6 O O3 GOL . . . D 3 14.398 -12.954 4.76 1 45.67 ? O3 GOL 401 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#