data_2PKC # _model_server_result.job_id AgSoWisk2BXDQb2xnqdQMg _model_server_result.datetime_utc '2025-02-27 19:07:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pkc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":280}' # _entry.id 2PKC # _exptl.entry_id 2PKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PKC _cell.length_a 68.27 _cell.length_b 68.27 _cell.length_c 108.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A O PRO 175 A PRO 175 1_555 B NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc2 A O VAL 177 A VAL 177 1_555 B NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A OD2 ASP 200 A ASP 200 1_555 B NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc4 B NA NA . A NA 280 1_555 C O HOH . A HOH 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc5 B NA NA . A NA 280 1_555 C O HOH . A HOH 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc6 B NA NA . A NA 280 1_555 C O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2PKC _atom_sites.fract_transf_matrix[1][1] 0.014648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 280 280 NA NA . C 3 HOH A 1 281 281 HOH HOH . C 3 HOH A 2 282 282 HOH HOH . C 3 HOH A 3 283 283 HOH HOH . C 3 HOH A 4 284 284 HOH HOH . C 3 HOH A 5 285 285 HOH HOH . C 3 HOH A 6 286 286 HOH HOH . C 3 HOH A 7 287 287 HOH HOH . C 3 HOH A 8 288 288 HOH HOH . C 3 HOH A 9 289 289 HOH HOH . C 3 HOH A 10 290 290 HOH HOH . C 3 HOH A 11 291 291 HOH HOH . C 3 HOH A 12 292 292 HOH HOH . C 3 HOH A 13 293 293 HOH HOH . C 3 HOH A 14 294 294 HOH HOH . C 3 HOH A 15 295 295 HOH HOH . C 3 HOH A 16 296 296 HOH HOH . C 3 HOH A 17 297 297 HOH HOH . C 3 HOH A 18 298 298 HOH HOH . C 3 HOH A 19 299 299 HOH HOH . C 3 HOH A 20 300 300 HOH HOH . C 3 HOH A 21 301 301 HOH HOH . C 3 HOH A 22 302 302 HOH HOH . C 3 HOH A 23 303 303 HOH HOH . C 3 HOH A 24 304 304 HOH HOH . C 3 HOH A 25 305 305 HOH HOH . C 3 HOH A 26 306 306 HOH HOH . C 3 HOH A 27 307 307 HOH HOH . C 3 HOH A 28 308 308 HOH HOH . C 3 HOH A 29 309 309 HOH HOH . C 3 HOH A 30 310 310 HOH HOH . C 3 HOH A 31 311 311 HOH HOH . C 3 HOH A 32 312 312 HOH HOH . C 3 HOH A 33 313 313 HOH HOH . C 3 HOH A 34 314 314 HOH HOH . C 3 HOH A 35 315 315 HOH HOH . C 3 HOH A 36 316 316 HOH HOH . C 3 HOH A 37 317 317 HOH HOH . C 3 HOH A 38 318 318 HOH HOH . C 3 HOH A 39 319 319 HOH HOH . C 3 HOH A 40 320 320 HOH HOH . C 3 HOH A 41 321 321 HOH HOH . C 3 HOH A 42 322 322 HOH HOH . C 3 HOH A 43 323 323 HOH HOH . C 3 HOH A 44 324 324 HOH HOH . C 3 HOH A 45 325 325 HOH HOH . C 3 HOH A 46 326 326 HOH HOH . C 3 HOH A 47 327 327 HOH HOH . C 3 HOH A 48 328 328 HOH HOH . C 3 HOH A 49 329 329 HOH HOH . C 3 HOH A 50 330 330 HOH HOH . C 3 HOH A 51 331 331 HOH HOH . C 3 HOH A 52 332 332 HOH HOH . C 3 HOH A 53 333 333 HOH HOH . C 3 HOH A 54 334 334 HOH HOH . C 3 HOH A 55 335 335 HOH HOH . C 3 HOH A 56 336 336 HOH HOH . C 3 HOH A 57 337 337 HOH HOH . C 3 HOH A 58 338 338 HOH HOH . C 3 HOH A 59 339 339 HOH HOH . C 3 HOH A 60 340 340 HOH HOH . C 3 HOH A 61 341 341 HOH HOH . C 3 HOH A 62 342 342 HOH HOH . C 3 HOH A 63 343 343 HOH HOH . C 3 HOH A 64 344 344 HOH HOH . C 3 HOH A 65 345 345 HOH HOH . C 3 HOH A 66 346 346 HOH HOH . C 3 HOH A 67 347 347 HOH HOH . C 3 HOH A 68 348 348 HOH HOH . C 3 HOH A 69 349 349 HOH HOH . C 3 HOH A 70 350 350 HOH HOH . C 3 HOH A 71 351 351 HOH HOH . C 3 HOH A 72 352 352 HOH HOH . C 3 HOH A 73 353 353 HOH HOH . C 3 HOH A 74 354 354 HOH HOH . C 3 HOH A 75 355 355 HOH HOH . C 3 HOH A 76 356 356 HOH HOH . C 3 HOH A 77 357 357 HOH HOH . C 3 HOH A 78 358 358 HOH HOH . C 3 HOH A 79 359 359 HOH HOH . C 3 HOH A 80 360 360 HOH HOH . C 3 HOH A 81 361 361 HOH HOH . C 3 HOH A 82 362 362 HOH HOH . C 3 HOH A 83 363 363 HOH HOH . C 3 HOH A 84 364 364 HOH HOH . C 3 HOH A 85 365 365 HOH HOH . C 3 HOH A 86 366 366 HOH HOH . C 3 HOH A 87 367 367 HOH HOH . C 3 HOH A 88 368 368 HOH HOH . C 3 HOH A 89 369 369 HOH HOH . C 3 HOH A 90 370 370 HOH HOH . C 3 HOH A 91 371 371 HOH HOH . C 3 HOH A 92 372 372 HOH HOH . C 3 HOH A 93 373 373 HOH HOH . C 3 HOH A 94 374 374 HOH HOH . C 3 HOH A 95 375 375 HOH HOH . C 3 HOH A 96 376 376 HOH HOH . C 3 HOH A 97 377 377 HOH HOH . C 3 HOH A 98 378 378 HOH HOH . C 3 HOH A 99 379 379 HOH HOH . C 3 HOH A 100 380 380 HOH HOH . C 3 HOH A 101 381 381 HOH HOH . C 3 HOH A 102 382 382 HOH HOH . C 3 HOH A 103 383 383 HOH HOH . C 3 HOH A 104 384 384 HOH HOH . C 3 HOH A 105 385 385 HOH HOH . C 3 HOH A 106 386 386 HOH HOH . C 3 HOH A 107 387 387 HOH HOH . C 3 HOH A 108 388 388 HOH HOH . C 3 HOH A 109 389 389 HOH HOH . C 3 HOH A 110 390 390 HOH HOH . C 3 HOH A 111 391 391 HOH HOH . C 3 HOH A 112 392 392 HOH HOH . C 3 HOH A 113 393 393 HOH HOH . C 3 HOH A 114 394 394 HOH HOH . C 3 HOH A 115 395 395 HOH HOH . C 3 HOH A 116 396 396 HOH HOH . C 3 HOH A 117 397 397 HOH HOH . C 3 HOH A 118 398 398 HOH HOH . C 3 HOH A 119 399 399 HOH HOH . C 3 HOH A 120 400 400 HOH HOH . C 3 HOH A 121 401 401 HOH HOH . C 3 HOH A 122 402 402 HOH HOH . C 3 HOH A 123 403 403 HOH HOH . C 3 HOH A 124 404 404 HOH HOH . C 3 HOH A 125 405 405 HOH HOH . C 3 HOH A 126 406 406 HOH HOH . C 3 HOH A 127 407 407 HOH HOH . C 3 HOH A 128 408 408 HOH HOH . C 3 HOH A 129 409 409 HOH HOH . C 3 HOH A 130 410 410 HOH HOH . C 3 HOH A 131 411 411 HOH HOH . C 3 HOH A 132 412 412 HOH HOH . C 3 HOH A 133 413 413 HOH HOH . C 3 HOH A 134 414 414 HOH HOH . C 3 HOH A 135 415 415 HOH HOH . C 3 HOH A 136 416 416 HOH HOH . C 3 HOH A 137 417 417 HOH HOH . C 3 HOH A 138 418 418 HOH HOH . C 3 HOH A 139 419 419 HOH HOH . C 3 HOH A 140 420 420 HOH HOH . C 3 HOH A 141 421 421 HOH HOH . C 3 HOH A 142 422 422 HOH HOH . C 3 HOH A 143 423 423 HOH HOH . C 3 HOH A 144 424 424 HOH HOH . C 3 HOH A 145 425 425 HOH HOH . C 3 HOH A 146 426 426 HOH HOH . C 3 HOH A 147 427 427 HOH HOH . C 3 HOH A 148 428 428 HOH HOH . C 3 HOH A 149 429 429 HOH HOH . C 3 HOH A 150 430 430 HOH HOH . C 3 HOH A 151 431 431 HOH HOH . C 3 HOH A 152 432 432 HOH HOH . C 3 HOH A 153 433 433 HOH HOH . C 3 HOH A 154 434 434 HOH HOH . C 3 HOH A 155 435 435 HOH HOH . C 3 HOH A 156 436 436 HOH HOH . C 3 HOH A 157 437 437 HOH HOH . C 3 HOH A 158 438 438 HOH HOH . C 3 HOH A 159 439 439 HOH HOH . C 3 HOH A 160 440 440 HOH HOH . C 3 HOH A 161 441 441 HOH HOH . C 3 HOH A 162 442 442 HOH HOH . C 3 HOH A 163 443 443 HOH HOH . C 3 HOH A 164 444 444 HOH HOH . C 3 HOH A 165 445 445 HOH HOH . C 3 HOH A 166 446 446 HOH HOH . C 3 HOH A 167 447 447 HOH HOH . C 3 HOH A 168 448 448 HOH HOH . C 3 HOH A 169 449 449 HOH HOH . C 3 HOH A 170 450 450 HOH HOH . C 3 HOH A 171 451 451 HOH HOH . C 3 HOH A 172 452 452 HOH HOH . C 3 HOH A 173 453 453 HOH HOH . C 3 HOH A 174 454 454 HOH HOH . C 3 HOH A 175 455 455 HOH HOH . C 3 HOH A 176 456 456 HOH HOH . C 3 HOH A 177 457 457 HOH HOH . C 3 HOH A 178 458 458 HOH HOH . C 3 HOH A 179 459 459 HOH HOH . C 3 HOH A 180 460 460 HOH HOH . C 3 HOH A 181 461 461 HOH HOH . C 3 HOH A 182 462 462 HOH HOH . C 3 HOH A 183 463 463 HOH HOH . C 3 HOH A 184 464 464 HOH HOH . C 3 HOH A 185 465 465 HOH HOH . C 3 HOH A 186 466 466 HOH HOH . C 3 HOH A 187 467 467 HOH HOH . C 3 HOH A 188 468 468 HOH HOH . C 3 HOH A 189 469 469 HOH HOH . C 3 HOH A 190 470 470 HOH HOH . C 3 HOH A 191 471 471 HOH HOH . C 3 HOH A 192 472 472 HOH HOH . C 3 HOH A 193 473 473 HOH HOH . C 3 HOH A 194 474 474 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 54.275 _atom_site.Cartn_y 34.954 _atom_site.Cartn_z 53.716 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 280 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #