data_2PKK # _model_server_result.job_id jxDV-VlM1r3JXLqec1TsWg _model_server_result.datetime_utc '2024-11-05 00:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pkk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 2PKK # _exptl.entry_id 2PKK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 285.232 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2PKK _cell.length_a 71.916 _cell.length_b 71.916 _cell.length_c 110.521 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PKK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 124.562166 73.680667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 F N5 O4' _chem_comp.formula_weight 285.232 _chem_comp.id 2FA _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-AMINO-2-FLUORO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-FLUOROADENOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' 2FA sing 1 n n O5' H5' 2FA sing 2 n n C5' C4' 2FA sing 3 n n C5' "H5'1" 2FA sing 4 n n C5' "H5'2" 2FA sing 5 n n C4' O4' 2FA sing 6 n n C4' C3' 2FA sing 7 n n C4' H4' 2FA sing 8 n n O4' C1' 2FA sing 9 n n C1' N9 2FA sing 10 n n C1' C2' 2FA sing 11 n n C1' H1' 2FA sing 12 n n N9 C4 2FA sing 13 n y N9 C8 2FA sing 14 n y C4 N3 2FA doub 15 n y C4 C5 2FA sing 16 n y N3 C2 2FA sing 17 n y C2 F 2FA sing 18 n n C2 N1 2FA doub 19 n y N1 C6 2FA sing 20 n y C6 N6 2FA sing 21 n n C6 C5 2FA doub 22 n y N6 HN61 2FA sing 23 n n N6 HN62 2FA sing 24 n n C5 N7 2FA sing 25 n y N7 C8 2FA doub 26 n y C8 H8 2FA sing 27 n n C2' O2' 2FA sing 28 n n C2' C3' 2FA sing 29 n n C2' H2' 2FA sing 30 n n O2' H1 2FA sing 31 n n C3' O3' 2FA sing 32 n n C3' H3' 2FA sing 33 n n O3' H2 2FA sing 34 n n # _atom_sites.entry_id 2PKK _atom_sites.fract_transf_matrix[1][1] 0.013905 _atom_sites.fract_transf_matrix[1][2] 0.008028 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016056 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2FA A 1 501 501 2FA 2FA . C 3 HOH A 1 502 1 HOH HOH . C 3 HOH A 2 503 2 HOH HOH . C 3 HOH A 3 504 3 HOH HOH . C 3 HOH A 4 505 4 HOH HOH . C 3 HOH A 5 506 5 HOH HOH . C 3 HOH A 6 507 6 HOH HOH . C 3 HOH A 7 508 7 HOH HOH . C 3 HOH A 8 509 8 HOH HOH . C 3 HOH A 9 510 9 HOH HOH . C 3 HOH A 10 511 10 HOH HOH . C 3 HOH A 11 512 11 HOH HOH . C 3 HOH A 12 513 12 HOH HOH . C 3 HOH A 13 514 13 HOH HOH . C 3 HOH A 14 515 14 HOH HOH . C 3 HOH A 15 516 15 HOH HOH . C 3 HOH A 16 517 16 HOH HOH . C 3 HOH A 17 518 17 HOH HOH . C 3 HOH A 18 519 18 HOH HOH . C 3 HOH A 19 520 19 HOH HOH . C 3 HOH A 20 521 20 HOH HOH . C 3 HOH A 21 522 22 HOH HOH . C 3 HOH A 22 523 23 HOH HOH . C 3 HOH A 23 524 25 HOH HOH . C 3 HOH A 24 525 26 HOH HOH . C 3 HOH A 25 526 28 HOH HOH . C 3 HOH A 26 527 29 HOH HOH . C 3 HOH A 27 528 30 HOH HOH . C 3 HOH A 28 529 31 HOH HOH . C 3 HOH A 29 530 33 HOH HOH . C 3 HOH A 30 531 34 HOH HOH . C 3 HOH A 31 532 35 HOH HOH . C 3 HOH A 32 533 37 HOH HOH . C 3 HOH A 33 534 38 HOH HOH . C 3 HOH A 34 535 39 HOH HOH . C 3 HOH A 35 536 40 HOH HOH . C 3 HOH A 36 537 41 HOH HOH . C 3 HOH A 37 538 42 HOH HOH . C 3 HOH A 38 539 43 HOH HOH . C 3 HOH A 39 540 44 HOH HOH . C 3 HOH A 40 541 46 HOH HOH . C 3 HOH A 41 542 47 HOH HOH . C 3 HOH A 42 543 48 HOH HOH . C 3 HOH A 43 544 49 HOH HOH . C 3 HOH A 44 545 50 HOH HOH . C 3 HOH A 45 546 51 HOH HOH . C 3 HOH A 46 547 52 HOH HOH . C 3 HOH A 47 548 54 HOH HOH . C 3 HOH A 48 549 55 HOH HOH . C 3 HOH A 49 550 56 HOH HOH . C 3 HOH A 50 551 57 HOH HOH . C 3 HOH A 51 552 58 HOH HOH . C 3 HOH A 52 553 59 HOH HOH . C 3 HOH A 53 554 60 HOH HOH . C 3 HOH A 54 555 61 HOH HOH . C 3 HOH A 55 556 62 HOH HOH . C 3 HOH A 56 557 63 HOH HOH . C 3 HOH A 57 558 64 HOH HOH . C 3 HOH A 58 559 65 HOH HOH . C 3 HOH A 59 560 66 HOH HOH . C 3 HOH A 60 561 67 HOH HOH . C 3 HOH A 61 562 68 HOH HOH . C 3 HOH A 62 563 69 HOH HOH . C 3 HOH A 63 564 70 HOH HOH . C 3 HOH A 64 565 71 HOH HOH . C 3 HOH A 65 566 72 HOH HOH . C 3 HOH A 66 567 73 HOH HOH . C 3 HOH A 67 568 74 HOH HOH . C 3 HOH A 68 569 76 HOH HOH . C 3 HOH A 69 570 77 HOH HOH . C 3 HOH A 70 571 78 HOH HOH . C 3 HOH A 71 572 80 HOH HOH . C 3 HOH A 72 573 81 HOH HOH . C 3 HOH A 73 574 82 HOH HOH . C 3 HOH A 74 575 83 HOH HOH . C 3 HOH A 75 576 84 HOH HOH . C 3 HOH A 76 577 85 HOH HOH . C 3 HOH A 77 578 86 HOH HOH . C 3 HOH A 78 579 87 HOH HOH . C 3 HOH A 79 580 88 HOH HOH . C 3 HOH A 80 581 89 HOH HOH . C 3 HOH A 81 582 90 HOH HOH . C 3 HOH A 82 583 91 HOH HOH . C 3 HOH A 83 584 92 HOH HOH . C 3 HOH A 84 585 93 HOH HOH . C 3 HOH A 85 586 94 HOH HOH . C 3 HOH A 86 587 95 HOH HOH . C 3 HOH A 87 588 96 HOH HOH . C 3 HOH A 88 589 97 HOH HOH . C 3 HOH A 89 590 99 HOH HOH . C 3 HOH A 90 591 100 HOH HOH . C 3 HOH A 91 592 101 HOH HOH . C 3 HOH A 92 593 102 HOH HOH . C 3 HOH A 93 594 104 HOH HOH . C 3 HOH A 94 595 105 HOH HOH . C 3 HOH A 95 596 106 HOH HOH . C 3 HOH A 96 597 107 HOH HOH . C 3 HOH A 97 598 110 HOH HOH . C 3 HOH A 98 599 112 HOH HOH . C 3 HOH A 99 600 113 HOH HOH . C 3 HOH A 100 601 114 HOH HOH . C 3 HOH A 101 602 115 HOH HOH . C 3 HOH A 102 603 116 HOH HOH . C 3 HOH A 103 604 118 HOH HOH . C 3 HOH A 104 605 119 HOH HOH . C 3 HOH A 105 606 120 HOH HOH . C 3 HOH A 106 607 121 HOH HOH . C 3 HOH A 107 608 122 HOH HOH . C 3 HOH A 108 609 124 HOH HOH . C 3 HOH A 109 610 125 HOH HOH . C 3 HOH A 110 611 127 HOH HOH . C 3 HOH A 111 612 128 HOH HOH . C 3 HOH A 112 613 129 HOH HOH . C 3 HOH A 113 614 130 HOH HOH . C 3 HOH A 114 615 131 HOH HOH . C 3 HOH A 115 616 133 HOH HOH . C 3 HOH A 116 617 134 HOH HOH . C 3 HOH A 117 618 135 HOH HOH . C 3 HOH A 118 619 136 HOH HOH . C 3 HOH A 119 620 137 HOH HOH . C 3 HOH A 120 621 138 HOH HOH . C 3 HOH A 121 622 139 HOH HOH . C 3 HOH A 122 623 141 HOH HOH . C 3 HOH A 123 624 144 HOH HOH . C 3 HOH A 124 625 145 HOH HOH . C 3 HOH A 125 626 147 HOH HOH . C 3 HOH A 126 627 148 HOH HOH . C 3 HOH A 127 628 149 HOH HOH . C 3 HOH A 128 629 150 HOH HOH . C 3 HOH A 129 630 151 HOH HOH . C 3 HOH A 130 631 152 HOH HOH . C 3 HOH A 131 632 154 HOH HOH . C 3 HOH A 132 633 155 HOH HOH . C 3 HOH A 133 634 156 HOH HOH . C 3 HOH A 134 635 157 HOH HOH . C 3 HOH A 135 636 158 HOH HOH . C 3 HOH A 136 637 159 HOH HOH . C 3 HOH A 137 638 160 HOH HOH . C 3 HOH A 138 639 161 HOH HOH . C 3 HOH A 139 640 162 HOH HOH . C 3 HOH A 140 641 163 HOH HOH . C 3 HOH A 141 642 164 HOH HOH . C 3 HOH A 142 643 165 HOH HOH . C 3 HOH A 143 644 166 HOH HOH . C 3 HOH A 144 645 167 HOH HOH . C 3 HOH A 145 646 168 HOH HOH . C 3 HOH A 146 647 169 HOH HOH . C 3 HOH A 147 648 170 HOH HOH . C 3 HOH A 148 649 171 HOH HOH . C 3 HOH A 149 650 172 HOH HOH . C 3 HOH A 150 651 174 HOH HOH . C 3 HOH A 151 652 175 HOH HOH . C 3 HOH A 152 653 176 HOH HOH . C 3 HOH A 153 654 177 HOH HOH . C 3 HOH A 154 655 183 HOH HOH . C 3 HOH A 155 656 190 HOH HOH . C 3 HOH A 156 657 195 HOH HOH . C 3 HOH A 157 658 196 HOH HOH . C 3 HOH A 158 659 200 HOH HOH . C 3 HOH A 159 660 206 HOH HOH . C 3 HOH A 160 661 208 HOH HOH . C 3 HOH A 161 662 216 HOH HOH . C 3 HOH A 162 663 228 HOH HOH . C 3 HOH A 163 664 229 HOH HOH . C 3 HOH A 164 665 241 HOH HOH . C 3 HOH A 165 666 244 HOH HOH . C 3 HOH A 166 667 247 HOH HOH . C 3 HOH A 167 668 248 HOH HOH . C 3 HOH A 168 669 249 HOH HOH . C 3 HOH A 169 670 345 HOH HOH . C 3 HOH A 170 671 346 HOH HOH . C 3 HOH A 171 672 348 HOH HOH . C 3 HOH A 172 673 350 HOH HOH . C 3 HOH A 173 674 351 HOH HOH . C 3 HOH A 174 675 352 HOH HOH . C 3 HOH A 175 676 353 HOH HOH . C 3 HOH A 176 677 354 HOH HOH . C 3 HOH A 177 678 355 HOH HOH . C 3 HOH A 178 679 356 HOH HOH . C 3 HOH A 179 680 357 HOH HOH . C 3 HOH A 180 681 358 HOH HOH . C 3 HOH A 181 682 359 HOH HOH . C 3 HOH A 182 683 361 HOH HOH . C 3 HOH A 183 684 362 HOH HOH . C 3 HOH A 184 685 364 HOH HOH . C 3 HOH A 185 686 365 HOH HOH . C 3 HOH A 186 687 366 HOH HOH . C 3 HOH A 187 688 367 HOH HOH . C 3 HOH A 188 689 368 HOH HOH . C 3 HOH A 189 690 369 HOH HOH . C 3 HOH A 190 691 370 HOH HOH . C 3 HOH A 191 692 371 HOH HOH . C 3 HOH A 192 693 374 HOH HOH . C 3 HOH A 193 694 375 HOH HOH . C 3 HOH A 194 695 376 HOH HOH . C 3 HOH A 195 696 377 HOH HOH . C 3 HOH A 196 697 378 HOH HOH . C 3 HOH A 197 698 379 HOH HOH . C 3 HOH A 198 699 380 HOH HOH . C 3 HOH A 199 700 382 HOH HOH . C 3 HOH A 200 701 383 HOH HOH . C 3 HOH A 201 702 384 HOH HOH . C 3 HOH A 202 703 386 HOH HOH . C 3 HOH A 203 704 387 HOH HOH . C 3 HOH A 204 705 388 HOH HOH . C 3 HOH A 205 706 389 HOH HOH . C 3 HOH A 206 707 390 HOH HOH . C 3 HOH A 207 708 391 HOH HOH . C 3 HOH A 208 709 393 HOH HOH . C 3 HOH A 209 710 394 HOH HOH . C 3 HOH A 210 711 397 HOH HOH . C 3 HOH A 211 712 399 HOH HOH . C 3 HOH A 212 713 400 HOH HOH . C 3 HOH A 213 714 401 HOH HOH . C 3 HOH A 214 715 402 HOH HOH . C 3 HOH A 215 716 403 HOH HOH . C 3 HOH A 216 717 404 HOH HOH . C 3 HOH A 217 718 406 HOH HOH . C 3 HOH A 218 719 407 HOH HOH . C 3 HOH A 219 720 408 HOH HOH . C 3 HOH A 220 721 409 HOH HOH . C 3 HOH A 221 722 410 HOH HOH . C 3 HOH A 222 723 412 HOH HOH . C 3 HOH A 223 724 417 HOH HOH . C 3 HOH A 224 725 418 HOH HOH . C 3 HOH A 225 726 420 HOH HOH . C 3 HOH A 226 727 423 HOH HOH . C 3 HOH A 227 728 425 HOH HOH . C 3 HOH A 228 729 427 HOH HOH . C 3 HOH A 229 730 429 HOH HOH . C 3 HOH A 230 731 431 HOH HOH . C 3 HOH A 231 732 438 HOH HOH . C 3 HOH A 232 733 439 HOH HOH . C 3 HOH A 233 734 440 HOH HOH . C 3 HOH A 234 735 441 HOH HOH . C 3 HOH A 235 736 443 HOH HOH . C 3 HOH A 236 737 444 HOH HOH . C 3 HOH A 237 738 445 HOH HOH . C 3 HOH A 238 739 446 HOH HOH . C 3 HOH A 239 740 447 HOH HOH . C 3 HOH A 240 741 448 HOH HOH . C 3 HOH A 241 742 450 HOH HOH . C 3 HOH A 242 743 452 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' 2FA . . . B 2 14.679 60.021 21.88 1 26.23 ? O5' 2FA 501 A 1 HETATM 2 C C5' 2FA . . . B 2 13.385 60.585 22.254 1 29.62 ? C5' 2FA 501 A 1 HETATM 3 C C4' 2FA . . . B 2 12.964 60.018 23.605 1 31.39 ? C4' 2FA 501 A 1 HETATM 4 O O4' 2FA . . . B 2 13.226 58.629 23.781 1 21.47 ? O4' 2FA 501 A 1 HETATM 5 C C1' 2FA . . . B 2 12.235 58.011 24.661 1 20.4 ? C1' 2FA 501 A 1 HETATM 6 N N9 2FA . . . B 2 13.02 57.358 25.741 1 20.53 ? N9 2FA 501 A 1 HETATM 7 C C4 2FA . . . B 2 13.101 56.052 25.974 1 18.41 ? C4 2FA 501 A 1 HETATM 8 N N3 2FA . . . B 2 12.528 54.953 25.405 1 22.13 ? N3 2FA 501 A 1 HETATM 9 C C2 2FA . . . B 2 12.815 53.742 25.905 1 19.68 ? C2 2FA 501 A 1 HETATM 10 F F 2FA . . . B 2 12.274 52.672 25.328 1 22.45 ? F 2FA 501 A 1 HETATM 11 N N1 2FA . . . B 2 13.65 53.527 26.957 1 20.76 ? N1 2FA 501 A 1 HETATM 12 C C6 2FA . . . B 2 14.287 54.522 27.578 1 24.72 ? C6 2FA 501 A 1 HETATM 13 N N6 2FA . . . B 2 15.099 54.273 28.632 1 21.51 ? N6 2FA 501 A 1 HETATM 14 C C5 2FA . . . B 2 14.019 55.888 27.111 1 21.53 ? C5 2FA 501 A 1 HETATM 15 N N7 2FA . . . B 2 14.434 57.116 27.47 1 20.44 ? N7 2FA 501 A 1 HETATM 16 C C8 2FA . . . B 2 13.838 57.993 26.621 1 24.47 ? C8 2FA 501 A 1 HETATM 17 C C2' 2FA . . . B 2 11.328 59.141 25.162 1 18.01 ? C2' 2FA 501 A 1 HETATM 18 O O2' 2FA . . . B 2 9.946 58.79 25.21 1 20.2 ? O2' 2FA 501 A 1 HETATM 19 C C3' 2FA . . . B 2 11.593 60.341 24.239 1 18.97 ? C3' 2FA 501 A 1 HETATM 20 O O3' 2FA . . . B 2 10.496 60.654 23.365 1 20.36 ? O3' 2FA 501 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #