data_2PKL
#
_model_server_result.job_id            3ld-0uFPdrC3ekIBLtYSmQ 
_model_server_result.datetime_utc      '2024-11-24 15:36:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2pkl 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":932}' 
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_entry.id    2PKL 
#
_exptl.entry_id    2PKL 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              621.932 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2PKL 
_cell.length_a            55.07 
_cell.length_b            66.43 
_cell.length_c            72.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2PKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H9 I3 O4' 
_chem_comp.formula_weight    621.932 
_chem_comp.id                4HY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-(4-HYDROXY-3-IODO-PHENOXY)-3,5-DIIODO-PHENYL]-ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C3 4HY doub 1 n y 
C1 C11 4HY sing 2 n y 
C1 C13 4HY sing 3 n n 
C2 C4 4HY doub 4 n y 
C2 C12 4HY sing 5 n y 
C2 O2 4HY sing 6 n n 
C3 C5 4HY sing 7 n y 
C3 HC31 4HY sing 8 n n 
C4 C6 4HY sing 9 n y 
C4 HC41 4HY sing 10 n n 
C5 C7 4HY doub 11 n y 
C5 I1 4HY sing 12 n n 
C6 C8 4HY doub 13 n y 
C6 I2 4HY sing 14 n n 
C7 C9 4HY sing 15 n y 
C7 O2 4HY sing 16 n n 
C8 C10 4HY sing 17 n y 
C8 O1 4HY sing 18 n n 
C9 C11 4HY doub 19 n y 
C9 I3 4HY sing 20 n n 
C10 C12 4HY doub 21 n y 
C10 H101 4HY sing 22 n n 
C11 H111 4HY sing 23 n n 
C12 H121 4HY sing 24 n n 
C13 C14 4HY sing 25 n n 
C13 H131 4HY sing 26 n n 
C13 H132 4HY sing 27 n n 
C14 O3 4HY doub 28 n n 
C14 O4 4HY sing 29 n n 
O1 HO11 4HY sing 30 n n 
O4 HO41 4HY sing 31 n n 
#
_atom_sites.entry_id                     2PKL 
_atom_sites.fract_transf_matrix[1][1]    0.018159 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015053 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013744 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DHT A 1 931 931 DHT DHT . 
D 4 4HY A 1 932 1 4HY TRI . 
E 5 HOH A 1 933 1 HOH HOH . 
E 5 HOH A 2 934 2 HOH HOH . 
E 5 HOH A 3 935 3 HOH HOH . 
E 5 HOH A 4 936 4 HOH HOH . 
E 5 HOH A 5 937 5 HOH HOH . 
E 5 HOH A 6 938 6 HOH HOH . 
E 5 HOH A 7 939 7 HOH HOH . 
E 5 HOH A 8 940 8 HOH HOH . 
E 5 HOH A 9 941 9 HOH HOH . 
E 5 HOH A 10 942 10 HOH HOH . 
E 5 HOH A 11 943 11 HOH HOH . 
E 5 HOH A 12 944 12 HOH HOH . 
E 5 HOH A 13 945 13 HOH HOH . 
E 5 HOH A 14 946 14 HOH HOH . 
E 5 HOH A 15 947 15 HOH HOH . 
E 5 HOH A 16 948 16 HOH HOH . 
E 5 HOH A 17 949 17 HOH HOH . 
E 5 HOH A 18 950 18 HOH HOH . 
E 5 HOH A 19 951 19 HOH HOH . 
E 5 HOH A 20 952 20 HOH HOH . 
E 5 HOH A 21 953 21 HOH HOH . 
E 5 HOH A 22 954 22 HOH HOH . 
E 5 HOH A 23 955 23 HOH HOH . 
E 5 HOH A 24 956 24 HOH HOH . 
E 5 HOH A 25 957 25 HOH HOH . 
E 5 HOH A 26 958 26 HOH HOH . 
E 5 HOH A 27 959 27 HOH HOH . 
E 5 HOH A 28 960 28 HOH HOH . 
E 5 HOH A 29 961 29 HOH HOH . 
E 5 HOH A 30 962 30 HOH HOH . 
E 5 HOH A 31 963 31 HOH HOH . 
E 5 HOH A 32 964 32 HOH HOH . 
E 5 HOH A 33 965 33 HOH HOH . 
E 5 HOH A 34 966 34 HOH HOH . 
E 5 HOH A 35 967 35 HOH HOH . 
E 5 HOH A 36 968 36 HOH HOH . 
E 5 HOH A 37 969 37 HOH HOH . 
E 5 HOH A 38 970 38 HOH HOH . 
E 5 HOH A 39 971 39 HOH HOH . 
E 5 HOH A 40 972 41 HOH HOH . 
E 5 HOH A 41 973 42 HOH HOH . 
E 5 HOH A 42 974 43 HOH HOH . 
E 5 HOH A 43 975 44 HOH HOH . 
E 5 HOH A 44 976 45 HOH HOH . 
E 5 HOH A 45 977 46 HOH HOH . 
E 5 HOH A 46 978 47 HOH HOH . 
E 5 HOH A 47 979 48 HOH HOH . 
E 5 HOH A 48 980 49 HOH HOH . 
E 5 HOH A 49 981 50 HOH HOH . 
E 5 HOH A 50 982 51 HOH HOH . 
E 5 HOH A 51 983 52 HOH HOH . 
E 5 HOH A 52 984 53 HOH HOH . 
E 5 HOH A 53 985 54 HOH HOH . 
E 5 HOH A 54 986 55 HOH HOH . 
E 5 HOH A 55 987 56 HOH HOH . 
E 5 HOH A 56 988 57 HOH HOH . 
E 5 HOH A 57 989 58 HOH HOH . 
E 5 HOH A 58 990 59 HOH HOH . 
E 5 HOH A 59 991 60 HOH HOH . 
E 5 HOH A 60 992 61 HOH HOH . 
E 5 HOH A 61 993 62 HOH HOH . 
E 5 HOH A 62 994 63 HOH HOH . 
E 5 HOH A 63 995 64 HOH HOH . 
E 5 HOH A 64 996 65 HOH HOH . 
E 5 HOH A 65 997 66 HOH HOH . 
E 5 HOH A 66 998 67 HOH HOH . 
E 5 HOH A 67 999 68 HOH HOH . 
E 5 HOH A 68 1000 69 HOH HOH . 
F 5 HOH B 1 928 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4HY . . . D 4 14.983 19.685 28.458 0.5 74.89 ? C1 4HY 932 A 1 
HETATM 2 C C2 4HY . . . D 4 18.238 16.265 30.816 0.5 76.11 ? C2 4HY 932 A 1 
HETATM 3 C C3 4HY . . . D 4 15.144 19.608 29.9 0.5 75.62 ? C3 4HY 932 A 1 
HETATM 4 C C4 4HY . . . D 4 19.168 17.253 30.511 0.5 76.61 ? C4 4HY 932 A 1 
HETATM 5 C C5 4HY . . . D 4 15.788 18.495 30.466 0.5 75.76 ? C5 4HY 932 A 1 
HETATM 6 C C6 4HY . . . D 4 20.418 17.276 31.085 0.5 77.04 ? C6 4HY 932 A 1 
HETATM 7 C C7 4HY . . . D 4 16.285 17.445 29.676 0.5 74.61 ? C7 4HY 932 A 1 
HETATM 8 C C8 4HY . . . D 4 20.779 16.248 32.021 0.5 76.66 ? C8 4HY 932 A 1 
HETATM 9 C C9 4HY . . . D 4 16.11 17.528 28.268 0.5 73.2 ? C9 4HY 932 A 1 
HETATM 10 C C10 4HY . . . D 4 19.842 15.231 32.344 0.5 76.26 ? C10 4HY 932 A 1 
HETATM 11 C C11 4HY . . . D 4 15.445 18.677 27.661 0.5 73.85 ? C11 4HY 932 A 1 
HETATM 12 C C12 4HY . . . D 4 18.567 15.243 31.737 0.5 76.42 ? C12 4HY 932 A 1 
HETATM 13 C C13 4HY . . . D 4 14.35 20.893 27.844 0.5 75.45 ? C13 4HY 932 A 1 
HETATM 14 C C14 4HY . . . D 4 12.778 20.949 27.906 0.5 76.71 ? C14 4HY 932 A 1 
HETATM 15 I I1 4HY . . . D 4 15.982 18.362 32.55 0.5 80.43 ? I1 4HY 932 A 1 
HETATM 16 I I2 4HY . . . D 4 21.737 18.819 30.61 0.5 80.43 ? I2 4HY 932 A 1 
HETATM 17 I I3 4HY . . . D 4 16.773 15.919 27.099 0.5 67.99 ? I3 4HY 932 A 1 
HETATM 18 O O3 4HY . . . D 4 12.173 21.012 26.808 0.5 77.6 ? O3 4HY 932 A 1 
HETATM 19 O O2 4HY . . . D 4 16.954 16.311 30.195 0.5 75.57 ? O2 4HY 932 A 1 
HETATM 20 O O1 4HY . . . D 4 22.057 16.259 32.598 0.5 75.65 ? O1 4HY 932 A 1 
HETATM 21 O O4 4HY . . . D 4 12.246 20.932 29.047 0.5 76.63 ? O4 4HY 932 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#