data_2PKP # _model_server_result.job_id 3a6ugN8SyUQA56iJAqK9Hw _model_server_result.datetime_utc '2024-11-24 06:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2pkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2PKP # _exptl.entry_id 2PKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2PKP _cell.length_a 90.992 _cell.length_b 108.283 _cell.length_c 45.449 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2PKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 22.7245 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 2PKP _atom_sites.fract_transf_matrix[1][1] 0.01099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 171 1 ZN ZN2 . C 3 PEG A 1 401 401 PEG PEG . D 4 HOH A 1 402 201 HOH HOH . D 4 HOH A 2 403 202 HOH HOH . D 4 HOH A 3 404 203 HOH HOH . D 4 HOH A 4 405 204 HOH HOH . D 4 HOH A 5 406 205 HOH HOH . D 4 HOH A 6 407 206 HOH HOH . D 4 HOH A 7 408 207 HOH HOH . D 4 HOH A 8 409 208 HOH HOH . D 4 HOH A 9 410 209 HOH HOH . D 4 HOH A 10 411 210 HOH HOH . D 4 HOH A 11 412 211 HOH HOH . D 4 HOH A 12 413 212 HOH HOH . D 4 HOH A 13 414 213 HOH HOH . D 4 HOH A 14 415 214 HOH HOH . D 4 HOH A 15 416 215 HOH HOH . D 4 HOH A 16 417 216 HOH HOH . D 4 HOH A 17 418 217 HOH HOH . D 4 HOH A 18 419 218 HOH HOH . D 4 HOH A 19 420 219 HOH HOH . D 4 HOH A 20 421 220 HOH HOH . D 4 HOH A 21 422 221 HOH HOH . D 4 HOH A 22 423 222 HOH HOH . D 4 HOH A 23 424 223 HOH HOH . D 4 HOH A 24 425 224 HOH HOH . D 4 HOH A 25 426 225 HOH HOH . D 4 HOH A 26 427 226 HOH HOH . D 4 HOH A 27 428 227 HOH HOH . D 4 HOH A 28 429 228 HOH HOH . D 4 HOH A 29 430 229 HOH HOH . D 4 HOH A 30 431 230 HOH HOH . D 4 HOH A 31 432 231 HOH HOH . D 4 HOH A 32 433 232 HOH HOH . D 4 HOH A 33 434 233 HOH HOH . D 4 HOH A 34 435 234 HOH HOH . D 4 HOH A 35 436 235 HOH HOH . D 4 HOH A 36 437 236 HOH HOH . D 4 HOH A 37 438 237 HOH HOH . D 4 HOH A 38 439 238 HOH HOH . D 4 HOH A 39 440 239 HOH HOH . D 4 HOH A 40 441 240 HOH HOH . D 4 HOH A 41 442 241 HOH HOH . D 4 HOH A 42 443 242 HOH HOH . D 4 HOH A 43 444 243 HOH HOH . D 4 HOH A 44 445 244 HOH HOH . D 4 HOH A 45 446 245 HOH HOH . D 4 HOH A 46 447 246 HOH HOH . D 4 HOH A 47 448 247 HOH HOH . D 4 HOH A 48 449 248 HOH HOH . D 4 HOH A 49 450 249 HOH HOH . D 4 HOH A 50 451 250 HOH HOH . D 4 HOH A 51 452 251 HOH HOH . D 4 HOH A 52 453 252 HOH HOH . D 4 HOH A 53 454 253 HOH HOH . D 4 HOH A 54 455 254 HOH HOH . D 4 HOH A 55 456 255 HOH HOH . D 4 HOH A 56 457 256 HOH HOH . D 4 HOH A 57 458 257 HOH HOH . D 4 HOH A 58 459 258 HOH HOH . D 4 HOH A 59 460 259 HOH HOH . D 4 HOH A 60 461 260 HOH HOH . D 4 HOH A 61 462 261 HOH HOH . D 4 HOH A 62 463 262 HOH HOH . D 4 HOH A 63 464 263 HOH HOH . D 4 HOH A 64 465 264 HOH HOH . D 4 HOH A 65 466 265 HOH HOH . D 4 HOH A 66 467 266 HOH HOH . D 4 HOH A 67 468 267 HOH HOH . D 4 HOH A 68 469 268 HOH HOH . D 4 HOH A 69 470 269 HOH HOH . D 4 HOH A 70 471 270 HOH HOH . D 4 HOH A 71 472 271 HOH HOH . D 4 HOH A 72 473 272 HOH HOH . D 4 HOH A 73 474 273 HOH HOH . D 4 HOH A 74 475 274 HOH HOH . D 4 HOH A 75 476 275 HOH HOH . D 4 HOH A 76 477 276 HOH HOH . D 4 HOH A 77 478 277 HOH HOH . D 4 HOH A 78 479 278 HOH HOH . D 4 HOH A 79 480 279 HOH HOH . D 4 HOH A 80 481 280 HOH HOH . D 4 HOH A 81 482 281 HOH HOH . D 4 HOH A 82 483 282 HOH HOH . D 4 HOH A 83 484 283 HOH HOH . D 4 HOH A 84 485 284 HOH HOH . D 4 HOH A 85 486 285 HOH HOH . D 4 HOH A 86 487 286 HOH HOH . D 4 HOH A 87 488 287 HOH HOH . D 4 HOH A 88 489 288 HOH HOH . D 4 HOH A 89 490 289 HOH HOH . D 4 HOH A 90 491 290 HOH HOH . D 4 HOH A 91 492 291 HOH HOH . D 4 HOH A 92 493 292 HOH HOH . D 4 HOH A 93 494 293 HOH HOH . D 4 HOH A 94 495 294 HOH HOH . D 4 HOH A 95 496 295 HOH HOH . D 4 HOH A 96 497 296 HOH HOH . D 4 HOH A 97 498 297 HOH HOH . D 4 HOH A 98 499 298 HOH HOH . D 4 HOH A 99 500 299 HOH HOH . D 4 HOH A 100 501 300 HOH HOH . D 4 HOH A 101 502 301 HOH HOH . D 4 HOH A 102 503 302 HOH HOH . D 4 HOH A 103 504 303 HOH HOH . D 4 HOH A 104 505 304 HOH HOH . D 4 HOH A 105 506 305 HOH HOH . D 4 HOH A 106 507 306 HOH HOH . D 4 HOH A 107 508 307 HOH HOH . D 4 HOH A 108 509 308 HOH HOH . D 4 HOH A 109 510 309 HOH HOH . D 4 HOH A 110 511 310 HOH HOH . D 4 HOH A 111 512 311 HOH HOH . D 4 HOH A 112 513 312 HOH HOH . D 4 HOH A 113 514 313 HOH HOH . D 4 HOH A 114 515 314 HOH HOH . D 4 HOH A 115 516 315 HOH HOH . D 4 HOH A 116 517 316 HOH HOH . D 4 HOH A 117 518 317 HOH HOH . D 4 HOH A 118 519 318 HOH HOH . D 4 HOH A 119 520 319 HOH HOH . D 4 HOH A 120 521 320 HOH HOH . D 4 HOH A 121 522 321 HOH HOH . D 4 HOH A 122 523 322 HOH HOH . D 4 HOH A 123 524 323 HOH HOH . D 4 HOH A 124 525 324 HOH HOH . D 4 HOH A 125 526 325 HOH HOH . D 4 HOH A 126 527 326 HOH HOH . D 4 HOH A 127 528 327 HOH HOH . D 4 HOH A 128 529 328 HOH HOH . D 4 HOH A 129 530 329 HOH HOH . D 4 HOH A 130 531 330 HOH HOH . D 4 HOH A 131 532 331 HOH HOH . D 4 HOH A 132 533 332 HOH HOH . D 4 HOH A 133 534 333 HOH HOH . D 4 HOH A 134 535 334 HOH HOH . D 4 HOH A 135 536 335 HOH HOH . D 4 HOH A 136 537 336 HOH HOH . D 4 HOH A 137 538 337 HOH HOH . D 4 HOH A 138 539 338 HOH HOH . D 4 HOH A 139 540 339 HOH HOH . D 4 HOH A 140 541 340 HOH HOH . D 4 HOH A 141 542 341 HOH HOH . D 4 HOH A 142 543 342 HOH HOH . D 4 HOH A 143 544 343 HOH HOH . D 4 HOH A 144 545 344 HOH HOH . D 4 HOH A 145 546 345 HOH HOH . D 4 HOH A 146 547 346 HOH HOH . D 4 HOH A 147 548 347 HOH HOH . D 4 HOH A 148 549 348 HOH HOH . D 4 HOH A 149 550 349 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 3.431 29.028 30.028 1 53.57 ? C1 PEG 401 A 1 HETATM 2 O O1 PEG . . . C 3 3.837 28.137 31.076 1 52.81 ? O1 PEG 401 A 1 HETATM 3 C C2 PEG . . . C 3 2.463 30.058 30.603 1 54.65 ? C2 PEG 401 A 1 HETATM 4 O O2 PEG . . . C 3 3.18 30.98 31.415 1 56.2 ? O2 PEG 401 A 1 HETATM 5 C C3 PEG . . . C 3 2.953 32.325 31.012 1 54.96 ? C3 PEG 401 A 1 HETATM 6 C C4 PEG . . . C 3 4.284 33.058 30.956 1 55.69 ? C4 PEG 401 A 1 HETATM 7 O O4 PEG . . . C 3 4.208 34.1 29.98 1 55.41 ? O4 PEG 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 7 #